Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016912

Physical Location & Seq

Genomic Coordinates Reverse (-)

4099293 .. 4100562

Gene Structure 1270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTGTGAAGAGTGAGCTTTCCATGGCATTAGTTGTGATGGTGGCGGCGGCGGCGGTGGGTTTGGTTGTTCCTGAGTCACTTGGTTGCATACCGACCCCGAGTGGTGGTGTGAAATACCCAGTCGGAGACCCCTTTTGGACCATTCCTCAAAACCCTGATTACTACACAAACTGGTCCTCTAACCATTTCTTCAAGATCGGTGACTCCCTCGGTAATCCTATTCCCCTTTTTGCATTCGATACGGGGCGTTACAACCTCCTGCAAGTGACAAAGCAAGAGTATGAGAAGTGCACAGGTTACAAGCCACTGAAAGTGTTCAACACTGGTCCAGTGACTATTCCATTGGAAGAAAAGGGTGTGTTTTACTACATATGCAACATCTCTACGTACTGTAGTCTTGGCCAGAAGATTTCTATTAAAGTGAACGAGTGTCCTTGCCCACTACCAAGTCCACCTCCGTCTTCCCCACCTCCCGCTTCTCCAACTCCTGTTCCTCCGTCTTCACCACCACTCATATCAACTCCTCAGCCATCTCCAAGCAGCCCTAACGGGTCCCAGCCTCCTTATGTGCAGGTTACAAGTCCAGCTCCGTTGCCAGTTGATAACGGTTCTCCTGAGGGTCCTTCAAACTCTGCAGCATTGATGCATAAAGGGATGTTTGGTGTTGGTTTTGGGGTGCTACTCCTCGTTTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

234

Amino Acids

24.62

Weight (kDa)

6.08

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	47 - 136	4.3e-18	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05250
malus_domestica	MD07G1062400.v1.1
prunus_persica	Prupe.2G073300_v2.0.a1
pyrus_communis	pycom07g04790
rosa_chinensis	RchiOBHm_Chr1g0332061
rosa_laevigata	RLG00000029695
rosa_multiflora	Rmu_sc0003358.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318410
rosa_rugosa	Rorug01G0098100
rosa_samantha	Rh1AG122000 Rh1BG093400 Rh1CG116600 Rh1DG127700
rosa_wichuraiana	Rw1G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AciI	CCGC	5 cut(s)	47, 50, 53, 56, 477
AcoI	YGGCCR	1 cut(s)	403
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	196, 322, 630
AluBI	AGCT	2 cut(s)	19, 590
AluI	AGCT	2 cut(s)	19, 590
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	403
ApaLI	GTGCAC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	543, 638
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	5 cut(s)	141, 177, 329, 555, 623
AsuHPI	GGTGA	2 cut(s)	215, 498
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	5 cut(s)	141, 177, 329, 555, 623
AxyI	CCTNAGG	1 cut(s)	618
BaeGI	GKGCMC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	405
BbsI	GAAGAC	2 cut(s)	456, 495
Bbv12I	GWGCWC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	555, 650
BccI	CCATC	2 cut(s)	34, 541
BcoDI	GTCTC	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	394, 636
BfuAI	ACCTGC	1 cut(s)	565
BisI	GCNGC	5 cut(s)	48, 51, 54, 544, 639
BlsI	GCNGC	5 cut(s)	49, 52, 55, 545, 640
Bme18I	GGWCC	5 cut(s)	141, 177, 329, 555, 623
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	5 cut(s)	141, 177, 329, 555, 623
BmiI	GGNNCC	3 cut(s)	556, 557, 624
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	636
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	456, 495
Bpu10I	CCTNAGC	1 cut(s)	528
BsaAI	YACGTR	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	24, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	5 cut(s)	122, 179, 331, 332, 599
Bse21I	CCTNAGG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	24, 211
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	3 cut(s)	66, 542, 609
BseNI	ACTGG	5 cut(s)	122, 179, 331, 332, 599
BseRI	GAGGAG	2 cut(s)	516, 677
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	555, 650
BseYI	CCCAGC	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	593
BshFI	GGCC	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	5 cut(s)	47, 50, 53, 56, 477
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	67, 541, 610
BspLI	GGNNCC	3 cut(s)	556, 557, 624
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	123
BsrI	ACTGG	5 cut(s)	122, 179, 331, 332, 599
BssECI	CCNNGG	2 cut(s)	24, 211
BssMI	GATC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	395, 611
Bst6I	CTCTTC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	390
BstDEI	CTNAG	3 cut(s)	75, 528, 618
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	663
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	394, 636
BstSLI	GKGCMC	1 cut(s)	296
BstSNI	TACGTA	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	555, 650
BstV2I	GAAGAC	2 cut(s)	456, 495
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	308, 324, 339
BveI	ACCTGC	1 cut(s)	565
Cfr13I	GGNCC	5 cut(s)	141, 177, 329, 555, 623
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	8 cut(s)	5, 19, 307, 405, 532, 546, 562, 590
CviKI_1	RGCY	8 cut(s)	5, 19, 307, 405, 532, 546, 562, 590
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	75, 528, 618
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco105I	TACGTA	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	123
Eco47I	GGWCC	5 cut(s)	141, 177, 329, 555, 623
Eco81I	CCTNAGG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	100
EcoO109I	RGGNCCY	2 cut(s)	555, 623
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	28
FaiI	YATR	8 cut(s)	26, 92, 285, 374, 376, 518, 570, 651
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	484
FauNDI	CATATG	1 cut(s)	374
Fnu4HI	GCNGC	5 cut(s)	48, 51, 54, 544, 639
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	5 cut(s)	48, 51, 54, 544, 639
GluI	GCNGC	5 cut(s)	48, 51, 54, 544, 639
GsaI	CCCAGC	1 cut(s)	562
HaeIII	GGCC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	2 cut(s)	77, 206
HphI	GGTGA	2 cut(s)	215, 498
Hpy166II	GTNNAC	3 cut(s)	294, 427, 455
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	3 cut(s)	74, 196, 617
Hpy8I	GTNNAC	3 cut(s)	294, 427, 455
HpyAV	CCTTC	1 cut(s)	636
HpyCH4III	ACNGT	2 cut(s)	395, 611
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	8 cut(s)	90, 236, 265, 294, 378, 574, 638, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	75, 528, 618
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	28
KflI	GGGWCCC	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	2 cut(s)	555, 650
LweI	GCATC	1 cut(s)	636
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	7 cut(s)	78, 203, 251, 268, 299, 334, 577
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	6 cut(s)	22, 184, 362, 421, 456, 495
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	405
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	86, 200
MmeI	TCCRAC	2 cut(s)	106, 509
Mox20I	TGGCCA	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	374
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	3 cut(s)	556, 557, 624
NmuCI	GTSAC	4 cut(s)	78, 203, 268, 334
NsiI	ATGCAT	1 cut(s)	651
PctI	GAATGC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	49, 52, 55, 545, 640
PleI	GAGTC	2 cut(s)	85, 200
PpsI	GAGTC	2 cut(s)	85, 200
Ppu21I	YACGTR	1 cut(s)	390
PpuMI	RGGWCCY	2 cut(s)	555, 623
Psp5II	RGGWCCY	2 cut(s)	555, 623
PspFI	CCCAGC	1 cut(s)	558
PspN4I	GGNNCC	3 cut(s)	556, 557, 624
PspPI	GGNCC	5 cut(s)	141, 177, 329, 555, 623
PspPPI	RGGWCCY	2 cut(s)	555, 623
PstI	CTGCAG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	5 cut(s)	48, 51, 54, 544, 639
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	5 cut(s)	141, 177, 329, 555, 623
SchI	GAGTC	2 cut(s)	86, 200
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	8 cut(s)	21, 261, 301, 392, 460, 475, 579, 592
SfaNI	GCATC	1 cut(s)	636
SfcI	CTRYAG	2 cut(s)	394, 636
SinI	GGWCC	5 cut(s)	141, 177, 329, 555, 623
SnaBI	TACGTA	1 cut(s)	390
SsiI	CCGC	5 cut(s)	47, 50, 53, 56, 477
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	395, 611
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	3 cut(s)	50, 53, 56
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	315, 331, 339
TseFI	GTSAC	4 cut(s)	78, 203, 268, 334
TseI	GCWGC	2 cut(s)	543, 638
Tsp45I	GTSAC	4 cut(s)	78, 203, 268, 334
TspGWI	ACGGA	3 cut(s)	450, 489, 582
TspRI	CASTG	3 cut(s)	315, 331, 339
VneI	GTGCAC	1 cut(s)	292
VpaK11BI	GGWCC	5 cut(s)	141, 177, 329, 555, 623
XmnI	GAANNNNTTC	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.