Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007830

Physical Location & Seq

Genomic Coordinates Reverse (-)

7297844 .. 7299599

Gene Structure 1756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTTCGAACCCTCATGCCTCCAGGATTTGTGAGCGCCAGTCTTCGGATCGATCTCGCCGTCAGCTTGTTCTTGCCGTGGCTATCATTAGGCCTCCAGGACATCATGCGGAACAAAACAAAGCTATGGGATTTTGTCTGTACAACAATGTAGCTATTGCAGCAAGTGTCCTTTTAAATGAAAAGCCAGAATTGGGTATCAACAAAATTTTAATCGTTGATTGGGATGTGCATCATGGTAACGGTACTCAAAAGATGTTCTGGAAGGATCCTCGTGTTTTATTCTTCTCGGTTCATAGGCATGAGTTTGGAAGTTTTTATCCAGCTAATGGTGACGGCTTCTATACTATGATTGGAGAAGGACCAGGAACAAGATACAACGTTAATGTCCCCTGGGAAAATGGCCAGTGTGGGGACGCAGACTATTTTGCAGTTTGGGACCATGTTTTGGTTCCTGTTGCCAAGGTGTTTAATCCAGACTTAATTATGGTCTCTGCAGGATTTGATGCAGCTGCTGGTGATCCTGTAGGGGGTTGTCGTGTCACACCATATGGATACGCAGTTATGTTGAAAAAGTTGATGAGTTTTGCCAACGGAAAAATCGTGTTGGCTTTAGAAGGAGGATACAATCTCGAATCTATTGCAAGTTCAACTCTTTCTTGTGTTGAAGTTCTGCTGGACGACAATCCTATTCATGGGTCTTCAGAGGCATACCCATTTGAGTCTACATGGCGTGTGATACAAGTGGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006338 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0022622 GO:0030154 GO:0030856 GO:0032501 GO:0032502 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051276 GO:0065007 GO:0071704 GO:0071840 GO:0090558 GO:0090627 GO:0098732 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

252

Amino Acids

27.65

Weight (kDa)

5.97

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	26 - 224	2.2e-72	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61050 AT5G61060 AT5G61060
fragaria_vesca	FvH4_5g13910 FvH4_5g13910 FvH4_5g13910
malus_domestica	MD06G1202300.v1.1 MD14G1211400.v1.1
prunus_persica	Prupe.5G204500_v2.0.a1 Prupe.5G204500_v2.0.a1
pyrus_communis	pycom06g17830 pycom07g03000 pycom07g07960 pycom14g17500
rosa_chinensis	RchiOBHm_Chr7g0183031
rosa_laevigata	RLG00000005086
rosa_multiflora	Rmu_sc0000014.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270830
rosa_rugosa	Rorug06G0451900
rosa_samantha	Rh7AG055400 Rh7BG054800 Rh7CG056100 Rh7DG054900
rosa_wichuraiana	Rw7G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	329, 448
AccI	GTMKAC	1 cut(s)	725
AciI	CCGC	1 cut(s)	110
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	4 cut(s)	57, 263, 276, 515
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	2 cut(s)	143, 247
AfiI	CCNNNNNNNGG	7 cut(s)	46, 194, 329, 412, 448, 530, 695
AgsI	TTSAA	3 cut(s)	571, 651, 668
AjnI	CCWGG	4 cut(s)	23, 97, 364, 392
AluBI	AGCT	5 cut(s)	67, 125, 155, 326, 512
AluI	AGCT	5 cut(s)	67, 125, 155, 326, 512
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	4 cut(s)	57, 263, 276, 515
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	92, 403
ApeKI	GCWGC	3 cut(s)	161, 509, 512
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	362, 439
AsuHPI	GGTGA	2 cut(s)	344, 530
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	362, 439
BalI	TGGCCA	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	36, 693
BbvI	GCAGC	3 cut(s)	173, 499, 521
BceAI	ACGGC	3 cut(s)	45, 62, 352
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	4 cut(s)	25, 99, 366, 394
BciVI	GTATCC	2 cut(s)	548, 617
BcoDI	GTCTC	1 cut(s)	496
BfmI	CTRYAG	2 cut(s)	495, 525
BfoI	RGCGCY	1 cut(s)	40
BfuI	GTATCC	2 cut(s)	548, 617
BisI	GCNGC	3 cut(s)	162, 510, 513
BlsI	GCNGC	3 cut(s)	163, 511, 514
Bme1390I	CCNGG	4 cut(s)	25, 99, 366, 394
Bme18I	GGWCC	2 cut(s)	362, 439
BmgT120I	GGNCC	2 cut(s)	362, 439
BmiI	GGNNCC	3 cut(s)	270, 440, 453
BmrFI	CCNGG	4 cut(s)	25, 99, 366, 394
BmsI	GCATC	2 cut(s)	241, 496
BpiI	GAAGAC	2 cut(s)	36, 693
BpmI	CTGGAG	2 cut(s)	7, 81
Bpu14I	TTCGAA	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	4 cut(s)	78, 392, 393, 462
Bsc4I	CCNNNNNNNGG	7 cut(s)	46, 194, 329, 412, 448, 530, 695
Bse1I	ACTGG	2 cut(s)	40, 406
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	4 cut(s)	25, 99, 366, 394
BseCI	ATCGAT	1 cut(s)	52
BseDI	CCNNGG	4 cut(s)	78, 392, 393, 462
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	7 cut(s)	46, 194, 329, 412, 448, 530, 695
BseNI	ACTGG	2 cut(s)	40, 406
BseXI	GCAGC	3 cut(s)	173, 499, 521
BshFI	GGCC	2 cut(s)	94, 405
BshVI	ATCGAT	1 cut(s)	52
BslFI	GGGAC	3 cut(s)	374, 428, 452
BslI	CCNNNNNNNGG	7 cut(s)	46, 194, 329, 412, 448, 530, 695
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	3 cut(s)	374, 428, 452
BsnI	GGCC	2 cut(s)	94, 405
Bso31I	GGTCTC	1 cut(s)	496
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	49, 53, 268, 520
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	94, 405
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	270, 440, 453
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	4 cut(s)	57, 263, 276, 515
BspT104I	TTCGAA	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	496
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	40, 406
BssECI	CCNNGG	4 cut(s)	78, 392, 393, 462
BssMI	GATC	4 cut(s)	49, 53, 268, 520
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	4 cut(s)	25, 99, 366, 394
Bst4CI	ACNGT	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	4 cut(s)	52, 56, 271, 523
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	4 cut(s)	49, 53, 268, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	4 cut(s)	25, 99, 366, 394
BstSCI	CCNGG	4 cut(s)	23, 97, 364, 392
BstSFI	CTRYAG	2 cut(s)	495, 525
BstV1I	GCAGC	3 cut(s)	173, 499, 521
BstV2I	GAAGAC	2 cut(s)	36, 693
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	52
BsuI	GTATCC	2 cut(s)	548, 617
BsuRI	GGCC	2 cut(s)	94, 405
BsuTUI	ATCGAT	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	413
CaiI	CAGNNNCTG	1 cut(s)	515
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	362, 439
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	142, 246
CviAII	CATG	7 cut(s)	17, 107, 236, 302, 443, 695, 729
CviQI	GTAC	2 cut(s)	142, 246
DpnI	GATC	4 cut(s)	51, 55, 270, 522
DpnII	GATC	4 cut(s)	49, 53, 268, 520
DraI	TTTAAA	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	2 cut(s)	362, 439
Eco57I	CTGAAG	1 cut(s)	687
EcoRII	CCWGG	4 cut(s)	23, 97, 364, 392
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	7 cut(s)	20, 110, 239, 305, 446, 698, 732
FaqI	GGGAC	3 cut(s)	374, 428, 452
FatI	CATG	7 cut(s)	16, 106, 235, 301, 442, 694, 728
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	3 cut(s)	162, 510, 513
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	162, 510, 513
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	162, 510, 513
GsuI	CTGGAG	2 cut(s)	7, 81
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	94, 405
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	7 cut(s)	20, 110, 239, 305, 446, 698, 732
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	635, 722
HphI	GGTGA	2 cut(s)	344, 530
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	2 cut(s)	49, 706
Hpy188III	TCNNGA	3 cut(s)	262, 476, 632
Hpy8I	GTNNAC	1 cut(s)	726
HpyAV	CCTTC	3 cut(s)	259, 353, 611
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	6 cut(s)	161, 232, 431, 497, 509, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	7 cut(s)	20, 110, 239, 305, 446, 698, 732
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	49, 53, 268, 520
Lsp1109I	GCAGC	3 cut(s)	173, 499, 521
LweI	GCATC	2 cut(s)	241, 496
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	3 cut(s)	239, 332, 541
MalI	GATC	4 cut(s)	51, 55, 270, 522
MboI	GATC	4 cut(s)	49, 53, 268, 520
MboII	GAAGA	3 cut(s)	36, 277, 693
MflI	RGATCY	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	3 cut(s)	191, 207, 483
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	6 cut(s)	24, 31, 105, 282, 614, 700
Mox20I	TGGCCA	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	6 cut(s)	176, 212, 384, 471, 482, 754
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	512
MspR9I	CCNGG	4 cut(s)	25, 99, 366, 394
MvaI	CCWGG	4 cut(s)	25, 99, 366, 394
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	4 cut(s)	49, 53, 268, 520
NlaIII	CATG	7 cut(s)	20, 110, 239, 305, 446, 698, 732
NlaIV	GGNNCC	3 cut(s)	270, 440, 453
NmuCI	GTSAC	2 cut(s)	332, 541
NspV	TTCGAA	1 cut(s)	8
PasI	CCCWGGG	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	2 cut(s)	58, 600
PfeI	GAWTC	1 cut(s)	635
PflMI	CCANNNNNTGG	2 cut(s)	329, 448
PfoI	TCCNGGA	2 cut(s)	23, 97
PkrI	GCNGC	3 cut(s)	163, 511, 514
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
Psp1406I	AACGTT	1 cut(s)	381
Psp6I	CCWGG	4 cut(s)	23, 97, 364, 392
PspGI	CCWGG	4 cut(s)	23, 97, 364, 392
PspN4I	GGNNCC	3 cut(s)	270, 440, 453
PspPI	GGNCC	2 cut(s)	362, 439
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	2 cut(s)	143, 247
RsaNI	GTAC	2 cut(s)	142, 246
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	6 cut(s)	176, 212, 384, 471, 482, 754
SatI	GCNGC	3 cut(s)	162, 510, 513
Sau3AI	GATC	4 cut(s)	49, 53, 268, 520
Sau96I	GGNCC	2 cut(s)	362, 439
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	4 cut(s)	25, 99, 366, 394
SetI	ASST	7 cut(s)	69, 127, 157, 328, 384, 468, 514
SfaNI	GCATC	2 cut(s)	241, 496
SfcI	CTRYAG	2 cut(s)	495, 525
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	2 cut(s)	362, 439
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	191, 207, 483
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	4 cut(s)	23, 97, 364, 392
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	8, 52, 633
TasI	AATT	3 cut(s)	191, 207, 483
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	6 cut(s)	176, 212, 384, 471, 482, 754
Tru9I	TTAA	6 cut(s)	176, 212, 384, 471, 482, 754
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	2 cut(s)	332, 541
TseI	GCWGC	3 cut(s)	161, 509, 512
Tsp45I	GTSAC	2 cut(s)	332, 541
TspDTI	ATGAA	3 cut(s)	195, 284, 683
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	413
Van91I	CCANNNNNTGG	2 cut(s)	329, 448
VpaK11BI	GGWCC	2 cut(s)	362, 439
XapI	RAATTY	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.