Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010340

Physical Location & Seq

Genomic Coordinates Reverse (-)

10189089 .. 10194994

Gene Structure 5906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGAATCTAAGCTACACCGAAAAGGTAATTCAGACACAAATATGTGATTGTGTCAATCAACTGACAAGTCCTCCCCTTTTTCCATTCCCCCGGACGCATTCCGATCATCGTCACCATATCCAAACCCTCACCTCCCCAATCCCTTTCCGGTTACCAATGGATCCGGTTCTTCCAGTTGCGGTGCTCACGATTCTCGTCGGCGCTGTCATCGCCCTCGCTTTCTTCACAAGCTACTTCCGGAAACGGAGCTCCGAAATCCAGTCCATATCGAAGCCGGAGCTCCAGTCGGACCCGAAAAAGCACCAATCAAAGCCTCACCAGACTAAGAAGTCTCACGCCCGAGCTCACTCTCACGCCTCTGACAAGGATCAAAACAAGAAACATCATCCGTTGGATGTGAATACTTTGAAAGGCCATGGAGATGCGGTCAATGGCCTATGCTTCTCCTCTGACGGGCGGAGTTTGGCAACAGCTTGTGCGGATGGAGTGCTTAGGGTATTCAAGTTGGATGATGCTTCGAGTAAAAGTTTCAAGTTTCTGAGAATTAGTTTGCCTCCTGGAGCTGGTCAGCCTGTAGCAGTTTCATTTTCGGATGATGGATTATCAATAGTTGTGGCTTCTCAAGGTCTGACCGGATCTTCTTTGTACATGTACGGTGGGGTGGAAAAACCCAAACCTTCTGAGGGAGCTAAGCAGCAACCCAAGCTTCCTCTGCCTGAAGTCAAGTGGGACCATCACAAAGTTCATGATAAATTAGGTATTCTCACCCTATCTGGGACCACAGCGAGTTATGGCACTGCTGATGGGAGTACAATTGTTGCTTCATGCTCAGAAGGAACTGACATCAAACTTTGGCATGGTAAAACCGGCAAGATTTTGGGGCATGTTGACACAAATCAGTTGAAAAACACCATGGCTGCTATATCACCAAATGGGCGTTTCCTTGCTGCAGCAGCGTTTACTGCAGATGTGAAGGTGTGGGAAATCATCTATTCAAAGGATGGTTCAGTGAAGGAGGTCACAAAAGCTATGCAACTTAAAGGCCATAAGAGTGCAGTAACTTGGTTATGCTTTACTCCTAACTCAGAACAAATGATCACAGCGTCCAAAGATGGTTCAATAAGAATTTGGAATATCAATGTTCGATTTCATATGGATGAGGATCGAAAAACTCTGAAGGTGTTTCCAATTCCACTTGATTTGGGTGGTGCTGCTGCCCACTATGATCGTCTTAGTTTATCTCCGGATGGAAAAATATTGGCAGCAACCCATGGTTTGACACTACAATGGTTATGCATTGAAACTGGAAAGGTCTTGGACACAGCTGATAAAGCACATGAAGGTGACATCACAGGCATTTCTTGGGCACCCAAGCCAATTCCAATTGGTGATGAGAAAGTGCTGGTTTTGGCCACATCGAGTGTCGATAAGAAGGTAAAATTTTGGGCCGCTCCACCTGTTCCTGCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010033 GO:0012505 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030968 GO:0031369 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042149 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051219 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

491

Amino Acids

53.15

Weight (kDa)

9.13

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	131 - 209	8.8e-06	THOC3 beta-propeller domain
WD40	PF00400	133 - 167	8.5e-08	WD domain, G-beta repeat
EIF3I	PF24805	263 - 386	4.8e-06	EIF3I
Beta-prop_EML_2	PF23414	266 - 382	6.3e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	267 - 380	5.3e-07	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	270 - 380	2.9e-13	WDR5 beta-propeller domain
WD40_Prp19	PF24814	271 - 457	9.7e-12	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	271 - 394	1.1e-06	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	272 - 381	8.3e-08	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	275 - 424	1.5e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	278 - 379	6.6e-13	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	279 - 377	2.4e-06	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	307 - 380	3.6e-11	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	337 - 458	7.9e-12	WDHD1 first WD40 domain
WD40	PF00400	344 - 378	7.8e-09	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00090
fragaria_vesca	FvH4_7g11840 FvH4_7g11840 FvH4_7g11840 FvH4_7g11840
malus_domestica	MD02G1204700.v1.1 MD07G1121300.v1.1
prunus_persica	Prupe.2G145000_v2.0.a1
pyrus_communis	pycom02g16680 pycom07g10320
rosa_chinensis	RchiOBHm_Chr1g0350521
rosa_laevigata	RLG00000028479
rosa_multiflora	Rmu_sc0020900.1_g000001 Rmu_ssc0000083.1_g000024
rosa_roxburghii	Rroxscaffold_4G00304790
rosa_rugosa	Rorug01G0211700
rosa_samantha	Rh1AG226400 Rh1BG194800 Rh1CG211200 Rh1DG223000
rosa_wichuraiana	Rw1G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	1366
AccBSI	CCGCTC	1 cut(s)	1451
AccIII	TCCGGA	2 cut(s)	237, 1243
AciI	CCGC	5 cut(s)	179, 425, 457, 479, 1449
AclWI	GGATC	5 cut(s)	155, 168, 375, 643, 1170
AcoI	YGGCCR	1 cut(s)	1410
AcsI	RAATTY	2 cut(s)	1125, 1439
AcuI	CTGAAG	2 cut(s)	738, 1196
AfaI	GTAC	3 cut(s)	647, 653, 811
AfiI	CCNNNNNNNGG	4 cut(s)	453, 563, 683, 774
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	7 cut(s)	409, 502, 532, 904, 996, 1119, 1301
AjnI	CCWGG	1 cut(s)	556
Alw21I	GWGCWC	4 cut(s)	186, 251, 282, 346
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	5 cut(s)	155, 168, 375, 643, 1170
Ama87I	CYCGRG	1 cut(s)	339
Aor13HI	TCCGGA	2 cut(s)	237, 1243
AoxI	GGCC	5 cut(s)	412, 433, 1042, 1410, 1446
ApeKI	GCWGC	8 cut(s)	694, 917, 947, 950, 953, 1211, 1214, 1262
ApoI	RAATTY	2 cut(s)	1125, 1439
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	4 cut(s)	289, 730, 777, 1446
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	7 cut(s)	104, 121, 308, 757, 918, 1355, 1400
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	3 cut(s)	289, 730, 777
BaeGI	GKGCMC	1 cut(s)	1369
BalI	TGGCCA	1 cut(s)	1412
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	1366
BanII	GRGCYC	3 cut(s)	251, 282, 346
Bbv12I	GWGCWC	4 cut(s)	186, 251, 282, 346
BbvI	GCAGC	8 cut(s)	706, 904, 934, 962, 965, 1198, 1201, 1274
BccI	CCATC	7 cut(s)	476, 590, 741, 797, 995, 1106, 1241
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	1095
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	336
BfmI	CTRYAG	3 cut(s)	573, 948, 963
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	9 cut(s)	695, 918, 948, 951, 954, 1212, 1215, 1263, 1449
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	9 cut(s)	696, 919, 949, 952, 955, 1213, 1216, 1264, 1450
Bme1390I	CCNGG	2 cut(s)	91, 558
Bme18I	GGWCC	3 cut(s)	289, 730, 777
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	4 cut(s)	289, 730, 777, 1446
BmiI	GGNNCC	5 cut(s)	162, 291, 731, 778, 1368
BmrFI	CCNGG	2 cut(s)	91, 558
BmsI	GCATC	2 cut(s)	412, 502
BpmI	CTGGAG	2 cut(s)	266, 579
Bpu10I	CCTNAGC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	606
BpuMI	CCSGG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	1161
BsaJI	CCNNGG	4 cut(s)	89, 415, 912, 1270
BsaWI	WCCGGW	5 cut(s)	147, 163, 237, 632, 1243
BsaXI	ACNNNNNCTCC	6 cut(s)	55, 85, 269, 299, 411, 441
Bsc4I	CCNNNNNNNGG	4 cut(s)	453, 563, 683, 774
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	4 cut(s)	173, 259, 283, 1309
Bse8I	GATNNNNATC	1 cut(s)	1161
BseAI	TCCGGA	2 cut(s)	237, 1243
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	4 cut(s)	89, 415, 912, 1270
BseGI	GGATG	8 cut(s)	385, 400, 487, 514, 598, 1006, 1162, 1252
BseJI	GATNNNNATC	1 cut(s)	1161
BseLI	CCNNNNNNNGG	4 cut(s)	453, 563, 683, 774
BseMII	CTCAG	4 cut(s)	530, 672, 843, 1098
BseNI	ACTGG	4 cut(s)	173, 259, 283, 1309
BseRI	GAGGAG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	1369
BseXI	GCAGC	8 cut(s)	706, 904, 934, 962, 965, 1198, 1201, 1274
BsgI	GTGCAG	1 cut(s)	1074
BshFI	GGCC	5 cut(s)	414, 435, 1044, 1412, 1448
BshNI	GGYRCC	1 cut(s)	1366
BsiHKAI	GWGCWC	4 cut(s)	186, 251, 282, 346
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	8 cut(s)	91, 148, 164, 238, 275, 633, 867, 1244
BslFI	GGGAC	2 cut(s)	743, 790
BslI	CCNNNNNNNGG	4 cut(s)	453, 563, 683, 774
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	2 cut(s)	743, 790
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	5 cut(s)	414, 435, 1044, 1412, 1448
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	5 cut(s)	186, 251, 282, 346, 1369
Bsp13I	TCCGGA	2 cut(s)	237, 1243
Bsp1407I	TGTACA	1 cut(s)	645
Bsp143I	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
Bsp1720I	GCTNAGC	1 cut(s)	690
Bsp19I	CCATGG	3 cut(s)	415, 912, 1270
BspACI	CCGC	5 cut(s)	179, 425, 457, 479, 1449
BspANI	GGCC	5 cut(s)	414, 435, 1044, 1412, 1448
BspCNI	CTCAG	4 cut(s)	531, 673, 842, 1097
BspEI	TCCGGA	2 cut(s)	237, 1243
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	5 cut(s)	162, 291, 731, 778, 1368
BspMAI	CTGCAG	2 cut(s)	952, 967
BspPI	GGATC	5 cut(s)	155, 168, 375, 643, 1170
BspT107I	GGYRCC	1 cut(s)	1366
BsrBI	CCGCTC	1 cut(s)	1451
BsrFI	RCCGGY	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	645
BsrI	ACTGG	4 cut(s)	173, 259, 283, 1309
BssAI	RCCGGY	1 cut(s)	866
BssECI	CCNNGG	4 cut(s)	89, 415, 912, 1270
BssMI	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
BssT1I	CCWWGG	3 cut(s)	415, 912, 1270
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	656
BstAUI	TGTACA	1 cut(s)	645
BstDEI	CTNAG	9 cut(s)	8, 324, 491, 539, 681, 690, 829, 1084, 1232
BstDSI	CCRYGG	3 cut(s)	415, 912, 1270
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	8 cut(s)	385, 400, 487, 514, 598, 1006, 1162, 1252
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	7 cut(s)	106, 163, 370, 638, 1098, 1165, 1228
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
BstMWI	GCNNNNNNNGC	6 cut(s)	209, 703, 712, 953, 962, 1331
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	2 cut(s)	652, 887
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	89, 556
BstSFI	CTRYAG	3 cut(s)	573, 948, 963
BstSLI	GKGCMC	1 cut(s)	1369
BstV1I	GCAGC	8 cut(s)	706, 904, 934, 962, 965, 1198, 1201, 1274
BstX2I	RGATCY	2 cut(s)	160, 635
BstYI	RGATCY	2 cut(s)	160, 635
BsuRI	GGCC	5 cut(s)	414, 435, 1044, 1412, 1448
BtgI	CCRYGG	3 cut(s)	415, 912, 1270
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	8 cut(s)	385, 400, 487, 514, 598, 1006, 1162, 1252
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	2 cut(s)	795, 1014
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	4 cut(s)	289, 730, 777, 1446
CseI	GACGC	2 cut(s)	103, 1092
Csp6I	GTAC	3 cut(s)	646, 652, 810
CspCI	CAANNNNNGTGG	4 cut(s)	594, 629, 1182, 1217
CviAII	CATG	9 cut(s)	416, 649, 746, 825, 857, 884, 913, 1271, 1337
CviQI	GTAC	3 cut(s)	646, 652, 810
DdeI	CTNAG	9 cut(s)	8, 324, 491, 539, 681, 690, 829, 1084, 1232
DpnI	GATC	7 cut(s)	105, 162, 369, 637, 1097, 1164, 1227
DpnII	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	1410
EciI	GGCGGA	1 cut(s)	472
Ecl136II	GAGCTC	3 cut(s)	249, 280, 344
Eco130I	CCWWGG	3 cut(s)	415, 912, 1270
Eco24I	GRGCYC	3 cut(s)	251, 282, 346
Eco47I	GGWCC	3 cut(s)	289, 730, 777
Eco53kI	GAGCTC	3 cut(s)	249, 280, 344
Eco57I	CTGAAG	2 cut(s)	738, 1196
Eco88I	CYCGRG	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	150
EcoICRI	GAGCTC	3 cut(s)	249, 280, 344
EcoO65I	GGTNACC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	3 cut(s)	415, 912, 1270
EcoT22I	ATGCAT	1 cut(s)	1298
EcoT38I	GRGCYC	3 cut(s)	251, 282, 346
ErhI	CCWWGG	3 cut(s)	415, 912, 1270
FaeI	CATG	9 cut(s)	419, 652, 749, 828, 860, 887, 916, 1274, 1340
FaqI	GGGAC	2 cut(s)	743, 790
FatI	CATG	9 cut(s)	415, 648, 745, 824, 856, 883, 912, 1270, 1336
FauNDI	CATATG	1 cut(s)	1152
FbaI	TGATCA	1 cut(s)	1095
Fnu4HI	GCNGC	9 cut(s)	695, 918, 948, 951, 954, 1212, 1215, 1263, 1449
FokI	GGATG	8 cut(s)	372, 407, 494, 521, 605, 1013, 1169, 1259
FriOI	GRGCYC	3 cut(s)	251, 282, 346
Fsp4HI	GCNGC	9 cut(s)	695, 918, 948, 951, 954, 1212, 1215, 1263, 1449
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	9 cut(s)	695, 918, 948, 951, 954, 1212, 1215, 1263, 1449
GsuI	CTGGAG	2 cut(s)	266, 579
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	414, 435, 1044, 1412, 1448
HapII	CCGG	8 cut(s)	91, 148, 164, 238, 275, 633, 867, 1244
HgaI	GACGC	2 cut(s)	103, 1092
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	9 cut(s)	419, 652, 749, 828, 860, 887, 916, 1274, 1340
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	2 cut(s)	4, 190
HpaII	CCGG	8 cut(s)	91, 148, 164, 238, 275, 633, 867, 1244
HphI	GGTGA	7 cut(s)	104, 121, 308, 757, 918, 1355, 1400
Hpy166II	GTNNAC	2 cut(s)	889, 960
Hpy188III	TCNNGA	4 cut(s)	187, 238, 746, 1244
Hpy8I	GTNNAC	2 cut(s)	889, 960
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	7 cut(s)	687, 827, 967, 1006, 1171, 1334, 1426
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4V	TGCA	6 cut(s)	950, 965, 1033, 1055, 1296, 1466
HpyF10VI	GCNNNNNNNGC	6 cut(s)	209, 703, 712, 953, 962, 1331
HpyF3I	CTNAG	9 cut(s)	8, 324, 491, 539, 681, 690, 829, 1084, 1232
Hsp92II	CATG	9 cut(s)	419, 652, 749, 828, 860, 887, 916, 1274, 1340
HspAI	GCGC	1 cut(s)	201
Kpn2I	TCCGGA	2 cut(s)	237, 1243
Ksp22I	TGATCA	1 cut(s)	1095
Kzo9I	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
LmnI	GCTCC	7 cut(s)	246, 254, 277, 285, 560, 686, 1456
Lsp1109I	GCAGC	8 cut(s)	706, 904, 934, 962, 965, 1198, 1201, 1274
LweI	GCATC	2 cut(s)	412, 502
MaeIII	GTNAC	5 cut(s)	110, 150, 1018, 1057, 1343
MalI	GATC	7 cut(s)	105, 162, 369, 637, 1097, 1164, 1227
MbiI	CCGCTC	1 cut(s)	1451
MboI	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
MboII	GAAGA	3 cut(s)	161, 214, 630
MfeI	CAATTG	2 cut(s)	813, 1383
MflI	RGATCY	2 cut(s)	160, 635
MhlI	GDGCHC	5 cut(s)	186, 251, 282, 346, 1369
MlsI	TGGCCA	1 cut(s)	1412
MluCI	AATT	9 cut(s)	27, 543, 752, 813, 1125, 1188, 1377, 1383, 1439
MluNI	TGGCCA	1 cut(s)	1412
MmeI	TCCRAC	3 cut(s)	267, 372, 486
Mox20I	TGGCCA	1 cut(s)	1412
Mph1103I	ATGCAT	1 cut(s)	1298
MroI	TCCGGA	2 cut(s)	237, 1243
MscI	TGGCCA	1 cut(s)	1412
MseI	TTAA	1 cut(s)	1038
MslI	CAYNNNNRTG	6 cut(s)	40, 420, 1050, 1155, 1285, 1341
Msp20I	TGGCCA	1 cut(s)	1412
MspA1I	CMGCKG	1 cut(s)	1325
MspI	CCGG	8 cut(s)	91, 148, 164, 238, 275, 633, 867, 1244
MspR9I	CCNGG	2 cut(s)	91, 558
MunI	CAATTG	2 cut(s)	813, 1383
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	6 cut(s)	209, 703, 712, 953, 962, 1331
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	3 cut(s)	415, 912, 1270
NdeI	CATATG	1 cut(s)	1152
NdeII	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
NlaIII	CATG	9 cut(s)	419, 652, 749, 828, 860, 887, 916, 1274, 1340
NlaIV	GGNNCC	5 cut(s)	162, 291, 731, 778, 1368
NmuCI	GTSAC	3 cut(s)	110, 1018, 1343
NsiI	ATGCAT	1 cut(s)	1298
NspI	RCATGY	2 cut(s)	652, 887
PagI	TCATGA	1 cut(s)	745
PciI	ACATGT	1 cut(s)	648
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	4, 190
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	9 cut(s)	696, 919, 949, 952, 955, 1213, 1216, 1264, 1450
PscI	ACATGT	1 cut(s)	648
Psp124BI	GAGCTC	3 cut(s)	251, 282, 346
Psp6I	CCWGG	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	5 cut(s)	162, 291, 731, 778, 1368
PspPI	GGNCC	4 cut(s)	289, 730, 777, 1446
PstI	CTGCAG	2 cut(s)	952, 967
PsuI	RGATCY	2 cut(s)	160, 635
PvuII	CAGCTG	1 cut(s)	1325
RsaI	GTAC	3 cut(s)	647, 653, 811
RsaNI	GTAC	3 cut(s)	646, 652, 810
RseI	CAYNNNNRTG	6 cut(s)	40, 420, 1050, 1155, 1285, 1341
SacI	GAGCTC	3 cut(s)	251, 282, 346
SaqAI	TTAA	1 cut(s)	1038
SatI	GCNGC	9 cut(s)	695, 918, 948, 951, 954, 1212, 1215, 1263, 1449
Sau3AI	GATC	7 cut(s)	103, 160, 367, 635, 1095, 1162, 1225
Sau96I	GGNCC	4 cut(s)	289, 730, 777, 1446
ScrFI	CCNGG	2 cut(s)	91, 558
SduI	GDGCHC	5 cut(s)	186, 251, 282, 346, 1369
SfaNI	GCATC	2 cut(s)	412, 502
SfcI	CTRYAG	3 cut(s)	573, 948, 963
SinI	GGWCC	3 cut(s)	289, 730, 777
SmiMI	CAYNNNNRTG	6 cut(s)	40, 420, 1050, 1155, 1285, 1341
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	9 cut(s)	27, 543, 752, 813, 1125, 1188, 1377, 1383, 1439
SsiI	CCGC	5 cut(s)	179, 425, 457, 479, 1449
SspI	AATATT	1 cut(s)	1257
SstI	GAGCTC	3 cut(s)	251, 282, 346
StyD4I	CCNGG	2 cut(s)	89, 556
StyI	CCWWGG	3 cut(s)	415, 912, 1270
TaaI	ACNGT	1 cut(s)	656
TaqI	TCGA	6 cut(s)	269, 518, 1144, 1165, 1418, 1425
TasI	AATT	9 cut(s)	27, 543, 752, 813, 1125, 1188, 1377, 1383, 1439
TatI	WGTACW	2 cut(s)	645, 809
TauI	GCSGC	1 cut(s)	1451
TfiI	GAWTC	2 cut(s)	4, 190
Tru1I	TTAA	1 cut(s)	1038
Tru9I	TTAA	1 cut(s)	1038
TscAI	CASTG	2 cut(s)	802, 1014
TseFI	GTSAC	3 cut(s)	110, 1018, 1343
TseI	GCWGC	8 cut(s)	694, 917, 947, 950, 953, 1211, 1214, 1262
Tsp45I	GTSAC	3 cut(s)	110, 1018, 1343
TspDTI	ATGAA	6 cut(s)	17, 573, 734, 813, 1139, 1353
TspGWI	ACGGA	2 cut(s)	259, 378
TspRI	CASTG	2 cut(s)	802, 1014
VpaK11BI	GGWCC	3 cut(s)	289, 730, 777
XapI	RAATTY	2 cut(s)	1125, 1439
XceI	RCATGY	2 cut(s)	652, 887
Zsp2I	ATGCAT	1 cut(s)	1298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.