pycom07g13120

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011716
Physical Location & Seq
Reverse (-)
14705560 .. 14710953
5394 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
ATGCTGAGATTCGACGAACCAAGGCTCGTTTGCTTGAAGAGCTCCCCAAATTGCGAAGACTTGCTCCTAAAAAGTGTGATCGATTTGATAACGAGGGTTGATGCAATATGCAAGAAATACGACAAGTACGACATAGATAAGCAAAAGGAGCTTAATAATATTTCTGGGGACGATGGTTTTGCTCGCCTATACGGGGCCGTTGAGGCCGACCTCGATGCTGCTCTCCAGAAATCGGAGATGGTATCAACGGAGAGGAACAGGGCTACTGCTGTTGCTATGAATGCTGAGATTCGACGAACCAAGGCTCGTTTGCTTGAAGAGCTCCCCAAATTGCGAAGACTTGCTCCTAAAAAGGTCAAAGGGCTTTCGAAAGAAGACCTTGAGGCTCGAAGCGAGTTAGTATTTGTACTAAAAGAGAGGATAGAAGGAATACCAGATGGATCAACAACTGCAGCTAAACAAACTGGTGGTTGGACAGATTCAGCTCCGTACGCTGGAATCAAAATTGACTCGAATGCAGATAGGAGATATGATAATGAGTACTTTCAACAGACTGAGGAGTCGGATCGCTTTAGGCAGGAGTATGAAATGCGAAGAATGAAACAGGATCAAGGTCTAGATGTTATAGCAGAAGGATTGGACACATTGAAAAATATGGCCAGCGACATGAATGAGGAAATAGATAGACAAGTGCCCTTGATGGATGAAATAGATGATAAGGTTGACAGGGCAAATGCTGACCTTAAAAACACTAATGTGAGACTCAAGGATACCATAGTCAAGCTGAGGTCTAGCCGGAACTTTTGCATCGATATCACCCTCCTGATTCTGGTTTTAGGAATCGCCGCCTATTTGTACAATGTCTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE

Protein Analysis

291

Amino Acids

33.06

Weight (kDa)

5.24

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 233 - 282 1.4e-09 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450 AT3G61450
fragaria_vesca FvH4_7g14860
malus_domestica MD07G1133600.v1.1
prunus_persica Prupe.2G173700_v2.0.a1
pyrus_communis pycom07g13120
rosa_chinensis RchiOBHm_Chr1g0356811
rosa_laevigata RLG00000028081
rosa_multiflora Rmu_sc0004814.1_g000002
rosa_roxburghii Rroxscaffold_4G00299340
rosa_rugosa Rorug01G0251400
rosa_samantha Rh1AG265700 Rh1BG233200 Rh1DG260700
rosa_wichuraiana Rw1G023480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 559
AciI CCGC 1 cut(s) 846
AclWI GGATC 3 cut(s) 448, 573, 615
AcoI YGGCCR 1 cut(s) 657
AfaI GTAC 5 cut(s) 128, 408, 491, 542, 857
AfiI CCNNNNNNNGG 4 cut(s) 193, 232, 494, 829
AgsI TTSAA 5 cut(s) 37, 317, 548, 649, 868
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 6 cut(s) 42, 151, 322, 455, 485, 784
AluI AGCT 6 cut(s) 42, 151, 322, 455, 485, 784
Alw21I GWGCWC 2 cut(s) 44, 324
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 3 cut(s) 448, 573, 615
AoxI GGCC 3 cut(s) 195, 204, 657
ApeKI GCWGC 2 cut(s) 218, 452
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 808
AsuII TTCGAA 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 696
BaeI ACNNNNGTAYC 2 cut(s) 762, 795
BalI TGGCCA 1 cut(s) 659
BanII GRGCYC 2 cut(s) 44, 324
BbsI GAAGAC 3 cut(s) 63, 343, 381
Bbv12I GWGCWC 2 cut(s) 44, 324
BbvCI CCTCAGC 1 cut(s) 785
BbvI GCAGC 2 cut(s) 205, 464
BccI CCATC 4 cut(s) 167, 232, 431, 694
BceAI ACGGC 1 cut(s) 182
BcgI CGANNNNNNTGC 4 cut(s) 161, 195, 197, 231
BciVI GTATCC 1 cut(s) 763
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 2 cut(s) 617, 792
BfmI CTRYAG 1 cut(s) 450
BfuI GTATCC 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 3 cut(s) 219, 453, 846
BlsI GCNGC 3 cut(s) 220, 454, 847
BmcAI AGTACT 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 3 cut(s) 91, 205, 816
BpiI GAAGAC 3 cut(s) 63, 343, 381
BpmI CTGGAG 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 785
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 2 cut(s) 401, 749
Bsa29I ATCGAT 2 cut(s) 81, 810
BsaJI CCNNGG 2 cut(s) 20, 300
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 232, 494, 829
Bse1I ACTGG 1 cut(s) 469
BseCI ATCGAT 2 cut(s) 81, 810
BseDI CCNNGG 2 cut(s) 20, 300
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 4 cut(s) 193, 232, 494, 829
BseMII CTCAG 3 cut(s) 276, 546, 776
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 696
BseXI GCAGC 2 cut(s) 205, 464
BshFI GGCC 3 cut(s) 197, 206, 659
BshVI ATCGAT 2 cut(s) 81, 810
BsiHKAI GWGCWC 2 cut(s) 44, 324
BsiSI CCGG 1 cut(s) 796
BsiWI CGTACG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 4 cut(s) 193, 232, 494, 829
BsmAI GTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 2 cut(s) 286, 520
BsnI GGCC 3 cut(s) 197, 206, 659
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 3 cut(s) 44, 324, 696
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 4 cut(s) 78, 440, 565, 607
BspACI CCGC 1 cut(s) 846
BspANI GGCC 3 cut(s) 197, 206, 659
BspCNI CTCAG 3 cut(s) 277, 547, 777
BspDI ATCGAT 2 cut(s) 81, 810
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 454
BspPI GGATC 3 cut(s) 448, 573, 615
BspQI GCTCTTC 2 cut(s) 32, 312
BspT104I TTCGAA 1 cut(s) 368
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 20, 300
BssMI GATC 4 cut(s) 78, 440, 565, 607
BssT1I CCWWGG 2 cut(s) 20, 300
Bst6I CTCTTC 2 cut(s) 32, 312
BstAUI TGTACA 1 cut(s) 855
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 184, 661
BstDEI CTNAG 4 cut(s) 5, 285, 555, 785
BstF5I GGATG 1 cut(s) 709
BstKTI GATC 4 cut(s) 81, 443, 568, 610
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 4 cut(s) 78, 440, 565, 607
BstMWI GCNNNNNNNGC 6 cut(s) 39, 148, 203, 281, 319, 491
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 696
BstV1I GCAGC 2 cut(s) 205, 464
BstV2I GAAGAC 3 cut(s) 63, 343, 381
Bsu15I ATCGAT 2 cut(s) 81, 810
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 3 cut(s) 197, 206, 659
BsuTUI ATCGAT 2 cut(s) 81, 810
BtsCI GGATG 1 cut(s) 709
Cac8I GCNNGC 2 cut(s) 184, 661
Cfr13I GGNCC 1 cut(s) 195
ClaI ATCGAT 2 cut(s) 81, 810
Csp6I GTAC 5 cut(s) 127, 407, 490, 541, 856
CviAII CATG 1 cut(s) 667
CviQI GTAC 5 cut(s) 127, 407, 490, 541, 856
DdeI CTNAG 4 cut(s) 5, 285, 555, 785
DpnI GATC 4 cut(s) 80, 442, 567, 609
DpnII GATC 4 cut(s) 78, 440, 565, 607
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 32, 312
EarI CTCTTC 2 cut(s) 32, 312
Ecl136II GAGCTC 2 cut(s) 42, 322
Eco130I CCWWGG 2 cut(s) 20, 300
Eco24I GRGCYC 2 cut(s) 44, 324
Eco32I GATATC 1 cut(s) 814
Eco53kI GAGCTC 2 cut(s) 42, 322
EcoICRI GAGCTC 2 cut(s) 42, 322
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 20, 300
EcoT38I GRGCYC 2 cut(s) 44, 324
ErhI CCWWGG 2 cut(s) 20, 300
FaeI CATG 1 cut(s) 670
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 219, 453, 846
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 2 cut(s) 44, 324
Fsp4HI GCNGC 3 cut(s) 219, 453, 846
FspBI CTAG 2 cut(s) 617, 792
GluI GCNGC 3 cut(s) 219, 453, 846
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 3 cut(s) 197, 206, 659
HapII CCGG 1 cut(s) 796
Hin1II CATG 1 cut(s) 670
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HinfI GANTC 9 cut(s) 9, 289, 479, 498, 509, 560, 762, 826, 840
HpaII CCGG 1 cut(s) 796
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 2 cut(s) 235, 565
Hpy188III TCNNGA 4 cut(s) 226, 617, 823, 865
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 2 cut(s) 17, 297
HpyAV CCTTC 2 cut(s) 419, 626
HpyCH4V TGCA 5 cut(s) 104, 111, 452, 518, 807
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 148, 203, 281, 319, 491
HpyF3I CTNAG 4 cut(s) 5, 285, 555, 785
Hsp92II CATG 1 cut(s) 670
Kzo9I GATC 4 cut(s) 78, 440, 565, 607
LguI GCTCTTC 2 cut(s) 32, 312
LmnI GCTCC 6 cut(s) 47, 69, 148, 327, 349, 490
Lsp1109I GCAGC 2 cut(s) 205, 464
LweI GCATC 3 cut(s) 91, 205, 816
MaeI CTAG 2 cut(s) 617, 792
MalI GATC 4 cut(s) 80, 442, 567, 609
MboI GATC 4 cut(s) 78, 440, 565, 607
MboII GAAGA 6 cut(s) 49, 68, 329, 348, 386, 606
MhlI GDGCHC 3 cut(s) 44, 324, 696
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 3 cut(s) 49, 329, 504
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 3 cut(s) 503, 569, 756
MmeI TCCRAC 2 cut(s) 452, 543
Mox20I TGGCCA 1 cut(s) 659
MscI TGGCCA 1 cut(s) 659
MseI TTAA 2 cut(s) 153, 744
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 659
MspI CCGG 1 cut(s) 796
Mva1269I GAATGC 2 cut(s) 286, 520
MwoI GCNNNNNNNGC 6 cut(s) 39, 148, 203, 281, 319, 491
NdeII GATC 4 cut(s) 78, 440, 565, 607
NlaIII CATG 1 cut(s) 670
NlaIV GGNNCC 1 cut(s) 196
NspV TTCGAA 1 cut(s) 368
OliI CACNNNNGTG 1 cut(s) 755
PciSI GCTCTTC 2 cut(s) 32, 312
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 2 cut(s) 286, 520
PfeI GAWTC 6 cut(s) 9, 289, 479, 498, 826, 840
Pfl23II CGTACG 1 cut(s) 489
PkrI GCNGC 3 cut(s) 220, 454, 847
PleI GAGTC 3 cut(s) 503, 568, 756
PpsI GAGTC 3 cut(s) 503, 568, 756
Psp124BI GAGCTC 2 cut(s) 44, 324
PspLI CGTACG 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 454
RsaI GTAC 5 cut(s) 128, 408, 491, 542, 857
RsaNI GTAC 5 cut(s) 127, 407, 490, 541, 856
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 2 cut(s) 44, 324
SapI GCTCTTC 2 cut(s) 32, 312
SaqAI TTAA 2 cut(s) 153, 744
SatI GCNGC 3 cut(s) 219, 453, 846
Sau3AI GATC 4 cut(s) 78, 440, 565, 607
Sau96I GGNCC 1 cut(s) 195
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 3 cut(s) 503, 569, 756
SduI GDGCHC 3 cut(s) 44, 324, 696
SfaNI GCATC 3 cut(s) 91, 205, 816
SfcI CTRYAG 1 cut(s) 450
SfiI GGCCNNNNNGGCC 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 380, 764
SmoI CTYRAG 2 cut(s) 380, 764
Sse9I AATT 3 cut(s) 49, 329, 504
SsiI CCGC 1 cut(s) 846
SspI AATATT 1 cut(s) 160
SspMI CTAG 2 cut(s) 617, 792
SstI GAGCTC 2 cut(s) 44, 324
StyI CCWWGG 2 cut(s) 20, 300
TaqI TCGA 8 cut(s) 12, 81, 213, 292, 368, 388, 512, 810
TasI AATT 3 cut(s) 49, 329, 504
TatI WGTACW 3 cut(s) 406, 540, 855
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 6 cut(s) 9, 289, 479, 498, 826, 840
Tru1I TTAA 2 cut(s) 153, 744
Tru9I TTAA 2 cut(s) 153, 744
TseI GCWGC 2 cut(s) 218, 452
TspDTI ATGAA 5 cut(s) 293, 600, 614, 683, 720
TspGWI ACGGA 2 cut(s) 263, 477
XbaI TCTAGA 1 cut(s) 616
XspI CTAG 2 cut(s) 617, 792
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.