Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Forward (+)

23751637 .. 23754181

Gene Structure 2545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATAACGATCGATCCCTCCGCCCGTCGCAGAAAGGTTCATTCCCAAAGCCCAACCTCGCAAGAACCGTGAACCAACTGTTCCCACTCCACGCCGACGCCGACGACGATGACGGTCAAGAAACTCGTCGGGCCCAGACTCTGCTAAGTGAGTACAAAGAGAGAAGACGGGGAGCTAAACTCGAAAAGAAATCCTCCGTGCAAGTTGCGTTTGGTCCTGGAGCAGCAGATGCATCCTCAACTTCTATCAGAACATTTGGAGTTGCAAAGGATGCCGATAGTAGCAAAAGCGGCAGCTTAGTTCTCAAAGGCTCTGATGATGAGCAAAGTCTCTTTACTTTTCCTTCAGCCTCTAATGAAGCTGAAACGGATGTAACTATGGAAGATGCTATTGATGCAGAACCATTTCAGATTGTCAAGAAAAATGATAGAGAATGTTGGGATTATGAGAATACATACTATCCTACTACTCTCCCTCTCAGGCAACCCAACTCTGGAGACCCAGAAATCCTTAATGCGAACGAATTCGGGGAGGATGCTGAAAAAGAGTATGATGAGAGCACGATAAATCCTGCTTCAAAACTCGGGCTGCTGGAGGAAAAAGTGAAAGCGAAGTTGTTATTCGTTCAACTTCCTTCCATTTTGCCATTGACGTCAAAGCCATCAGCTACTGCAAAGGGCAAAGAGAAAGTTGGAAGCTCAACATCGCTGGAGAGCTCAGGTGCTCCAAAGAAGGAAGGTAGTTTCGAAGAGTTGCCAGCCGGATTTTTGGGTAAAATGCTGGTTTACAAGAGCGGAGCAATCAAGTTGAGGCTAGGAGATACCCTCTATGATGTTTCACCTGGTTCAGACAGCGTGTCTGCTCAAGATGTTGTGGTAGCCAACACTGCAGAGAAGAAATGCATCGTTCTTGGAGAGCTGCGCCAGCGAGCTGTTGTAACTCCTGATGTGGATTCCCTCCTAAATGTGATTAGCATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

328

Amino Acids

35.42

Weight (kDa)

4.87

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc4	PF05132	204 - 317	9.2e-24	RNA polymerase III RPC4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	795
AciI	CCGC	3 cut(s)	22, 291, 795
AclWI	GGATC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	2 cut(s)	99, 653
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	579, 629
AhdI	GACNNNNNGTC	1 cut(s)	856
AjnI	CCWGG	2 cut(s)	217, 841
AluBI	AGCT	8 cut(s)	176, 297, 362, 668, 699, 717, 919, 932
AluI	AGCT	8 cut(s)	176, 297, 362, 668, 699, 717, 919, 932
Alw21I	GWGCWC	3 cut(s)	563, 719, 727
Alw26I	GTCTC	2 cut(s)	335, 492
AlwI	GGATC	1 cut(s)	9
AlwNI	CAGNNNCTG	2 cut(s)	142, 671
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	132
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	224, 294, 589, 919
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	2 cut(s)	405, 524
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	3 cut(s)	132, 133, 215
AsuHPI	GGTGA	1 cut(s)	831
AsuII	TTCGAA	1 cut(s)	747
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	136, 719
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	3 cut(s)	563, 719, 727
BbvI	GCAGC	4 cut(s)	236, 306, 576, 906
BccI	CCATC	1 cut(s)	670
BciT130I	CCWGG	2 cut(s)	219, 843
BcoDI	GTCTC	2 cut(s)	335, 492
BfaI	CTAG	1 cut(s)	815
BfmI	CTRYAG	1 cut(s)	888
BisI	GCNGC	5 cut(s)	225, 292, 295, 590, 920
BlsI	GCNGC	5 cut(s)	226, 293, 296, 591, 921
Bme1390I	CCNGG	2 cut(s)	219, 843
Bme18I	GGWCC	1 cut(s)	215
BmeRI	GACNNNNNGTC	1 cut(s)	856
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	132, 133, 215
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	219, 843
BmsI	GCATC	7 cut(s)	220, 242, 262, 376, 385, 526, 912
BpiI	GAAGAC	1 cut(s)	172
BplI	GAGNNNNNCTC	4 cut(s)	165, 197, 810, 842
BpmI	CTGGAG	4 cut(s)	240, 516, 614, 731
Bpu10I	CCTNAGC	1 cut(s)	718
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	849
Bsa29I	ATCGAT	2 cut(s)	13, 978
BsaBI	GATNNNNATC	2 cut(s)	9, 974
BsaHI	GRCGYC	2 cut(s)	99, 653
BsaI	GGTCTC	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse8I	GATNNNNATC	2 cut(s)	9, 974
BseBI	CCWGG	2 cut(s)	219, 843
BseCI	ATCGAT	2 cut(s)	13, 978
BseGI	GGATG	4 cut(s)	233, 277, 376, 541
BseJI	GATNNNNATC	2 cut(s)	9, 974
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	493, 732
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	4 cut(s)	236, 306, 576, 906
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	134
BshVI	ATCGAT	2 cut(s)	13, 978
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	3 cut(s)	563, 719, 727
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	762
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	335, 492
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	747
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	4 cut(s)	136, 563, 719, 727
Bsp143I	GATC	2 cut(s)	10, 14
BspACI	CCGC	3 cut(s)	22, 291, 795
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	492, 731
BspDI	ATCGAT	2 cut(s)	13, 978
BspLI	GGNNCC	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	892
BspPI	GGATC	1 cut(s)	9
BspT104I	TTCGAA	1 cut(s)	747
BspTNI	GGTCTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	795
BssMI	GATC	2 cut(s)	10, 14
BssNI	GRCGYC	2 cut(s)	99, 653
Bst2UI	CCWGG	2 cut(s)	219, 843
Bst4CI	ACNGT	3 cut(s)	70, 81, 116
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	2 cut(s)	99, 653
BstAPI	GCANNNNNTGC	2 cut(s)	230, 272
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	3 cut(s)	759, 926, 930
BstDEI	CTNAG	4 cut(s)	146, 298, 479, 718
BstF5I	GGATG	4 cut(s)	233, 277, 376, 541
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	2 cut(s)	13, 17
BstMAI	GTCTC	2 cut(s)	335, 492
BstMBI	GATC	2 cut(s)	10, 14
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 272, 291, 395, 887, 925
BstNI	CCWGG	2 cut(s)	219, 843
BstSCI	CCNGG	2 cut(s)	217, 841
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	4 cut(s)	236, 306, 576, 906
BstV2I	GAAGAC	1 cut(s)	172
Bsu15I	ATCGAT	2 cut(s)	13, 978
BsuRI	GGCC	1 cut(s)	134
BsuTUI	ATCGAT	2 cut(s)	13, 978
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	4 cut(s)	233, 277, 376, 541
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	1 cut(s)	885
Cac8I	GCNNGC	3 cut(s)	759, 926, 930
CaiI	CAGNNNCTG	2 cut(s)	142, 671
CfoI	GCGC	1 cut(s)	924
Cfr13I	GGNCC	3 cut(s)	132, 133, 215
ClaI	ATCGAT	2 cut(s)	13, 978
CseI	GACGC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	841
Csp6I	GTAC	1 cut(s)	154
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	146, 298, 479, 718
DpnI	GATC	2 cut(s)	12, 16
DpnII	GATC	2 cut(s)	10, 14
DriI	GACNNNNNGTC	1 cut(s)	856
Eam1104I	CTCTTC	1 cut(s)	744
Eam1105I	GACNNNNNGTC	1 cut(s)	856
EarI	CTCTTC	1 cut(s)	744
EciI	GGCGGA	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	717
Eco24I	GRGCYC	2 cut(s)	136, 719
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	717
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	717
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	217, 841
EcoT22I	ATGCAT	2 cut(s)	235, 905
EcoT38I	GRGCYC	2 cut(s)	136, 719
FaiI	YATR	5 cut(s)	380, 447, 457, 552, 831
Fnu4HI	GCNGC	5 cut(s)	225, 292, 295, 590, 920
FokI	GGATG	4 cut(s)	220, 284, 383, 548
FriOI	GRGCYC	2 cut(s)	136, 719
Fsp4HI	GCNGC	5 cut(s)	225, 292, 295, 590, 920
FspBI	CTAG	1 cut(s)	815
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	5 cut(s)	225, 292, 295, 590, 920
GsuI	CTGGAG	4 cut(s)	240, 516, 614, 731
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	762
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	924
Hin1I	GRCGYC	2 cut(s)	99, 653
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HinfI	GANTC	2 cut(s)	139, 953
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	1 cut(s)	831
Hpy166II	GTNNAC	2 cut(s)	73, 787
Hpy188I	TCNGA	4 cut(s)	251, 316, 411, 850
Hpy188III	TCNNGA	5 cut(s)	119, 418, 495, 866, 944
Hpy8I	GTNNAC	2 cut(s)	73, 787
Hpy99I	CGWCG	5 cut(s)	31, 101, 107, 110, 132
HpyAV	CCTTC	4 cut(s)	354, 645, 727, 731
HpyCH4III	ACNGT	3 cut(s)	70, 81, 116
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	7 cut(s)	202, 233, 266, 398, 674, 890, 903
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 272, 291, 395, 887, 925
HpyF3I	CTNAG	4 cut(s)	146, 298, 479, 718
HpySE526I	ACGT	1 cut(s)	653
Hsp92I	GRCGYC	2 cut(s)	99, 653
HspAI	GCGC	1 cut(s)	922
Kzo9I	GATC	2 cut(s)	10, 14
LmnI	GCTCC	4 cut(s)	173, 221, 730, 797
Lsp1109I	GCAGC	4 cut(s)	236, 306, 576, 906
LweI	GCATC	7 cut(s)	220, 242, 262, 376, 385, 526, 912
MabI	ACCWGGT	1 cut(s)	841
MaeI	CTAG	1 cut(s)	815
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	2 cut(s)	373, 937
MalI	GATC	2 cut(s)	12, 16
MbiI	CCGCTC	1 cut(s)	795
MboI	GATC	2 cut(s)	10, 14
MboII	GAAGA	4 cut(s)	177, 395, 761, 907
MhlI	GDGCHC	4 cut(s)	136, 563, 719, 727
MluCI	AATT	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	673
Mph1103I	ATGCAT	2 cut(s)	235, 905
MroXI	GAANNNNTTC	2 cut(s)	405, 524
MseI	TTAA	1 cut(s)	513
MspI	CCGG	1 cut(s)	762
MspR9I	CCNGG	2 cut(s)	219, 843
MvaI	CCWGG	2 cut(s)	219, 843
MwoI	GCNNNNNNNGC	6 cut(s)	230, 272, 291, 395, 887, 925
NdeII	GATC	2 cut(s)	10, 14
NlaIV	GGNNCC	1 cut(s)	134
NsiI	ATGCAT	2 cut(s)	235, 905
NspV	TTCGAA	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 99, 105
PdmI	GAANNNNTTC	2 cut(s)	405, 524
PfeI	GAWTC	1 cut(s)	953
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	226, 293, 296, 591, 921
Ple19I	CGATCG	1 cut(s)	13
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	719
Psp6I	CCWGG	2 cut(s)	217, 841
PspGI	CCWGG	2 cut(s)	217, 841
PspN4I	GGNNCC	1 cut(s)	134
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	132, 133, 215
PstI	CTGCAG	1 cut(s)	892
PstNI	CAGNNNCTG	2 cut(s)	142, 671
PvuI	CGATCG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	5 cut(s)	225, 292, 295, 590, 920
Sau3AI	GATC	2 cut(s)	10, 14
Sau96I	GGNCC	3 cut(s)	132, 133, 215
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	219, 843
SduI	GDGCHC	4 cut(s)	136, 563, 719, 727
SexAI	ACCWGGT	1 cut(s)	841
SfaNI	GCATC	7 cut(s)	220, 242, 262, 376, 385, 526, 912
SfcI	CTRYAG	1 cut(s)	888
SfuI	TTCGAA	1 cut(s)	747
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	3 cut(s)	22, 291, 795
SspMI	CTAG	1 cut(s)	815
SstI	GAGCTC	1 cut(s)	719
StyD4I	CCNGG	2 cut(s)	217, 841
TaaI	ACNGT	3 cut(s)	70, 81, 116
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	4 cut(s)	13, 183, 747, 978
TasI	AATT	1 cut(s)	524
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	953
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	892
TseI	GCWGC	4 cut(s)	224, 294, 589, 919
TspDTI	ATGAA	2 cut(s)	30, 372
TspGWI	ACGGA	2 cut(s)	187, 383
TspRI	CASTG	1 cut(s)	892
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	405, 524
XspI	CTAG	1 cut(s)	815
ZraI	GACGTC	1 cut(s)	654
Zsp2I	ATGCAT	2 cut(s)	235, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.