Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005856

Physical Location & Seq

Genomic Coordinates Reverse (-)

25380737 .. 25381686

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGAGATAAGTCGGGAAGTAGAGGGTCAATTCGAGCTGAAGAAGGTGATAGAAGGAAAACGAGCTCAAAGCTTACACATCATGAGGATACTCAGAGTGAAAACCTCAAGAAGAAGATGGGATGAATCAGAAGTTGGGAGAAAGGCAGAAGAAAGTCATTATGAAAAATCTGATTCAAGAAGCAGTATGCCTTCGGATCCTAAGTATGAGAGTTCTAAAGAGAAGAGTGTCTCTGCGAGAAATGAACCCAGTGACAGGAGAATCCGTGGTGTGGATTCAAACAGCGATAGGCCTACCAAATCTAACAGGGAAGAGAGAAAACCTGATGTGCAAAAGAGTAAGAGCAAAAGCAGGACAGAAACACTGGAAGAAGACAACAGGGATAGTCCTGTCACCTGTGAAGATAGATCAGGCAGGGAGAAAACTGAAGGGCATAGACAGCAGAGAACTCCAACTGGTCGGGATGTTGCTGAAAGCAAGGAGAGGTCTTTGAATGCAGATGAAGAAACAAATGGGGGGACGAAAGACAAGGGTCCTAGAGAAGTAGGAAATACCACCAGGTTGAGGACATCTGATAGGAGTGGGAGGCGTTATCAGGATTTAGAATACTTTAAGATGGATTATGACAGGAATTTTAATCTTAAGCGGAAGGAACTGGAAAAAGATGGTTATAGGAATGATCGACCTAAAGGCAGAGATGATAAGTGGACTGGCAGGAGTAAGGACCAGGAAGGTTCCAAAGAGAACTGGAAAGAAGGCAACCCAGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

259

Amino Acids

30.1

Weight (kDa)

9.44

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09980 AT4G09980
fragaria_vesca	FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240
malus_domestica	MD07G1276200.v1.1
prunus_persica	Prupe.2G298500_v2.0.a1 Prupe.2G298500_v2.0.a1
pyrus_communis	pycom01g21540 pycom07g24840 pycom07g25140
rosa_chinensis	RchiOBHm_Chr2g0116381
rosa_laevigata	RLG00000018264
rosa_multiflora	Rmu_co8372953.1_g000001 Rmu_sc0004191.1_g000072 Rmu_ssc0000108.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127270
rosa_rugosa	Rorug02G0206000 Rorug02G0206100.1
rosa_samantha	Rh2AG261600 Rh2BG273000 Rh2CG268000 Rh2DG269800
rosa_wichuraiana	Rw2G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 649
AclWI	GGATC	2 cut(s)	194, 207
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	2 cut(s)	62, 450
AfiI	CCNNNNNNNGG	3 cut(s)	258, 274, 567
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	3 cut(s)	180, 282, 496
AjnI	CCWGG	2 cut(s)	560, 729
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	3 cut(s)	40, 68, 75
AluI	AGCT	3 cut(s)	40, 68, 75
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	194, 207
AoxI	GGCC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	634
AspS9I	GGNCC	2 cut(s)	536, 727
AsuHPI	GGTGA	2 cut(s)	61, 388
AvaII	GGWCC	2 cut(s)	536, 727
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	3 cut(s)	114, 613, 662
BciT130I	CCWGG	2 cut(s)	562, 731
BciVI	GTATCC	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	644
BfuI	GTATCC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	562, 731
Bme18I	GGWCC	2 cut(s)	536, 727
BmgT120I	GGNCC	2 cut(s)	536, 727
BmiI	GGNNCC	3 cut(s)	201, 537, 739
BmrFI	CCNGG	2 cut(s)	562, 731
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
BoxI	GACNNNNGTC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 274, 567
Bse1I	ACTGG	6 cut(s)	252, 372, 463, 663, 718, 755
BseBI	CCWGG	2 cut(s)	562, 731
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	130, 472
BseLI	CCNNNNNNNGG	3 cut(s)	258, 274, 567
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	6 cut(s)	252, 372, 463, 663, 718, 755
BseYI	CCCAGC	1 cut(s)	766
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	3 cut(s)	258, 274, 567
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	199, 410, 682
BspACI	CCGC	2 cut(s)	5, 649
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	3 cut(s)	201, 537, 739
BspPI	GGATC	2 cut(s)	194, 207
BspTI	CTTAAG	1 cut(s)	644
BsrI	ACTGG	6 cut(s)	252, 372, 463, 663, 718, 755
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	199, 410, 682
Bst2UI	CCWGG	2 cut(s)	562, 731
Bst6I	CTCTTC	2 cut(s)	221, 309
BstAFI	CTTAAG	1 cut(s)	644
BstDEI	CTNAG	2 cut(s)	95, 204
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	130, 472
BstKTI	GATC	3 cut(s)	202, 413, 685
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	3 cut(s)	199, 410, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	2 cut(s)	562, 731
BstPAI	GACNNNNGTC	1 cut(s)	534
BstSCI	CCNGG	2 cut(s)	560, 729
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	295
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	130, 472
BtsIMutI	CAGTG	2 cut(s)	259, 365
CciI	TCATGA	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	536, 727
CsiI	ACCWGGT	1 cut(s)	560
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	4 cut(s)	40, 68, 75, 295
CviKI_1	RGCY	4 cut(s)	40, 68, 75, 295
DdeI	CTNAG	2 cut(s)	95, 204
DpnI	GATC	3 cut(s)	201, 412, 684
DpnII	GATC	3 cut(s)	199, 410, 682
Eam1104I	CTCTTC	2 cut(s)	221, 309
EarI	CTCTTC	2 cut(s)	221, 309
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	536, 727
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	62, 450
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	560, 729
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	1 cut(s)	88
FaiI	YATR	8 cut(s)	86, 165, 191, 210, 438, 627, 675, 775
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	1 cut(s)	84
FokI	GGATG	2 cut(s)	137, 479
FriOI	GRGCYC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	540
GsaI	CCCAGC	1 cut(s)	770
HaeIII	GGCC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	4 cut(s)	128, 176, 264, 278
HphI	GGTGA	2 cut(s)	61, 388
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	5 cut(s)	98, 133, 175, 199, 577
Hpy188III	TCNNGA	6 cut(s)	17, 85, 111, 180, 464, 599
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	7 cut(s)	40, 50, 204, 425, 646, 728, 752
HpyCH4V	TGCA	2 cut(s)	334, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	2 cut(s)	95, 204
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	199, 410, 682
MabI	ACCWGGT	1 cut(s)	560
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	254, 394
MalI	GATC	3 cut(s)	201, 412, 684
MboI	GATC	3 cut(s)	199, 410, 682
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	32, 634
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	6 cut(s)	19, 81, 118, 480, 561, 582
MseI	TTAA	3 cut(s)	615, 639, 645
MspCI	CTTAAG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	562, 731
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	2 cut(s)	562, 731
MwoI	GCNNNNNNNGC	1 cut(s)	442
NdeII	GATC	3 cut(s)	199, 410, 682
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	201, 537, 739
NmuCI	GTSAC	2 cut(s)	254, 394
PagI	TCATGA	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	4 cut(s)	128, 176, 264, 278
PpuMI	RGGWCCY	1 cut(s)	536
PshAI	GACNNNNGTC	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	536
Psp6I	CCWGG	2 cut(s)	560, 729
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	2 cut(s)	560, 729
PspN4I	GGNNCC	3 cut(s)	201, 537, 739
PspPI	GGNCC	2 cut(s)	536, 727
PspPPI	RGGWCCY	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	3 cut(s)	615, 639, 645
Sau3AI	GATC	3 cut(s)	199, 410, 682
Sau96I	GGNCC	2 cut(s)	536, 727
ScrFI	CCNGG	2 cut(s)	562, 731
SduI	GDGCHC	1 cut(s)	70
SexAI	ACCWGGT	1 cut(s)	560
SinI	GGWCC	2 cut(s)	536, 727
SmlI	CTYRAG	2 cut(s)	109, 644
SmoI	CTYRAG	2 cut(s)	109, 644
Sse9I	AATT	2 cut(s)	32, 634
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	2 cut(s)	5, 649
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	2 cut(s)	560, 729
TaqI	TCGA	2 cut(s)	36, 685
TasI	AATT	2 cut(s)	32, 634
TfiI	GAWTC	4 cut(s)	128, 176, 264, 278
Tru1I	TTAA	3 cut(s)	615, 639, 645
Tru9I	TTAA	3 cut(s)	615, 639, 645
TscAI	CASTG	2 cut(s)	259, 372
TseFI	GTSAC	2 cut(s)	254, 394
Tsp45I	GTSAC	2 cut(s)	254, 394
TspDTI	ATGAA	4 cut(s)	141, 180, 261, 519
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	259, 372
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	536, 727
XapI	RAATTY	1 cut(s)	634
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.