Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372953.1

Orthogroup ID

OG0005856

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1131

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372953.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

agcagaagagagttatcatgaaagatctgattcaagaagcagtaagccttctgatcctaagtgtgagacttctaaagagaaaaccgtgtcagcaagaaatgaaccaagcgaaagtaaaatcaggggagtagattcaagcagtgaaaggggtactaaatctaataacaaggaagagagaaaagctgatgcggaaaagagtaagagcaaaaacaggggagaaatacttgaagaagataacaggggcagtcctatcacgcgtgaagacagatcaggcaaggagaaagctgaaaagcatagacagcagagaactcccactgctcgcgatgctgctgagggcagggagaggtcgtctaatgcagatgacgatgcaagtgcagggattaaagataagagtgctagagaatttggaaatactactaggtcaaggacacctgagaggcccgggaggcgatatcaggattcagaacactttgagacagattatgaccgaagttttaatctcaagcggaaggaactggaaaaagatggttatagggacgaccgacctaaaggcagagatgataattatagtgacaggaatagggaccgggaagtccccaaagagaactggaaaagacggcagccccccagtaatgacaaggattccaaaaatggggatattagttatgatcatagcagggagtgggagctgccgagacatggtcgtgagaggggtgacaacgaaagacctcatggtcggtctggtaataggaaagatggaagccggggtgaagctgtgaaaacttcatcaaactttggaatttcaaatgaaaattatgatgtgattgagatccaaactaagccaatagattatggaagagcagagttgggatccaacttttctaggagaaacgaagttggtcaacaatctgatggaaaatcagcaccaattgatgaagaatggacaaggaagagtgatatgtatgggtctggaccacctagggaagattcaaaggagagatatactgatgatactacctccttgcgagatcagagttcatggaaggatgactttgactcccatggagtgaagggaaggggacaaagaggttctatgcctggccgcagtgctggtggccagagttctagtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

377

Amino Acids

42.91

Weight (kDa)

8.37

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09980 AT4G09980
fragaria_vesca	FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240 FvH4_1g22240
malus_domestica	MD07G1276200.v1.1
prunus_persica	Prupe.2G298500_v2.0.a1 Prupe.2G298500_v2.0.a1
pyrus_communis	pycom01g21540 pycom07g24840 pycom07g25140
rosa_chinensis	RchiOBHm_Chr2g0116381
rosa_laevigata	RLG00000018264
rosa_multiflora	Rmu_co8372953.1_g000001 Rmu_sc0004191.1_g000072 Rmu_ssc0000108.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127270
rosa_rugosa	Rorug02G0206000 Rorug02G0206100.1
rosa_samantha	Rh2AG261600 Rh2BG273000 Rh2CG268000 Rh2DG269800
rosa_wichuraiana	Rw2G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	591, 733
AccII	CGCG	2 cut(s)	257, 322
AciI	CCGC	3 cut(s)	189, 506, 1103
AclWI	GGATC	4 cut(s)	48, 824, 865, 878
AcoI	YGGCCR	2 cut(s)	1100, 1115
AcsI	RAATTY	2 cut(s)	402, 799
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	652, 699
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	5 cut(s)	34, 136, 228, 805, 991
AjnI	CCWGG	1 cut(s)	1097
AluBI	AGCT	4 cut(s)	183, 285, 689, 774
AluI	AGCT	4 cut(s)	183, 285, 689, 774
Alw26I	GTCTC	3 cut(s)	60, 468, 689
AlwI	GGATC	4 cut(s)	48, 824, 865, 878
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	3 cut(s)	438, 1100, 1115
ApeKI	GCWGC	3 cut(s)	327, 620, 689
ApoI	RAATTY	2 cut(s)	402, 799
AspA2I	CCTAGG	1 cut(s)	978
AspS9I	GGNCC	3 cut(s)	439, 584, 972
AsuC2I	CCSGG	4 cut(s)	442, 443, 588, 765
AsuHPI	GGTGA	2 cut(s)	726, 780
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	2 cut(s)	584, 972
AvrII	CCTAGG	1 cut(s)	978
BalI	TGGCCA	1 cut(s)	1117
BamHI	GGATCC	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	314, 632, 676
BccI	CCATC	3 cut(s)	519, 750, 906
BceAI	ACGGC	1 cut(s)	633
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BciT130I	CCWGG	1 cut(s)	1099
BclI	TGATCA	1 cut(s)	668
BcnI	CCSGG	4 cut(s)	442, 443, 588, 765
BcoDI	GTCTC	3 cut(s)	60, 468, 689
BfaI	CTAG	5 cut(s)	397, 418, 883, 979, 1126
BglI	GCCNNNNNGGC	1 cut(s)	446
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	4 cut(s)	328, 621, 690, 1103
BlnI	CCTAGG	1 cut(s)	978
BlsI	GCNGC	4 cut(s)	329, 622, 691, 1104
Bme1390I	CCNGG	5 cut(s)	442, 443, 588, 765, 1099
Bme18I	GGWCC	2 cut(s)	584, 972
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	3 cut(s)	439, 584, 972
BmiI	GGNNCC	2 cut(s)	585, 872
BmrFI	CCNGG	5 cut(s)	442, 443, 588, 765, 1099
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	3 cut(s)	176, 314, 356
BmuI	ACTGGG	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	268
Bpu10I	CCTNAGC	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	4 cut(s)	442, 443, 588, 765
BsaBI	GATNNNNATC	1 cut(s)	828
BsaJI	CCNNGG	4 cut(s)	441, 764, 978, 1061
BsaXI	ACNNNNNCTCC	4 cut(s)	333, 363, 1041, 1071
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 699
Bse1I	ACTGG	3 cut(s)	520, 612, 628
Bse8I	GATNNNNATC	1 cut(s)	828
BseBI	CCWGG	1 cut(s)	1099
BseDI	CCNNGG	4 cut(s)	441, 764, 978, 1061
BseGI	GGATG	1 cut(s)	1052
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	2 cut(s)	652, 699
BseMII	CTCAG	2 cut(s)	322, 424
BseNI	ACTGG	3 cut(s)	520, 612, 628
BseXI	GCAGC	3 cut(s)	314, 632, 676
BsgI	GTGCAG	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	257, 322
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	3 cut(s)	440, 1102, 1117
BsiEI	CGRYCG	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	3 cut(s)	442, 587, 764
BslFI	GGGAC	4 cut(s)	549, 579, 597, 1093
BslI	CCNNNNNNNGG	2 cut(s)	652, 699
BsmAI	GTCTC	3 cut(s)	60, 468, 689
BsmFI	GGGAC	4 cut(s)	549, 579, 597, 1093
BsnI	GGCC	3 cut(s)	440, 1102, 1117
BsoBI	CYCGRG	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
Bsp19I	CCATGG	1 cut(s)	1061
Bsp68I	TCGCGA	1 cut(s)	322
BspACI	CCGC	3 cut(s)	189, 506, 1103
BspANI	GGCC	3 cut(s)	440, 1102, 1117
BspCNI	CTCAG	2 cut(s)	323, 425
BspFNI	CGCG	2 cut(s)	257, 322
BspHI	TCATGA	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	585, 872
BspPI	GGATC	4 cut(s)	48, 824, 865, 878
BspQI	GCTCTTC	1 cut(s)	851
BsrI	ACTGG	3 cut(s)	520, 612, 628
BssECI	CCNNGG	4 cut(s)	441, 764, 978, 1061
BssMI	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
BssT1I	CCWWGG	2 cut(s)	978, 1061
Bst2UI	CCWGG	1 cut(s)	1099
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	3 cut(s)	166, 851, 945
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	4 cut(s)	58, 331, 433, 838
BstDSI	CCRYGG	1 cut(s)	1061
BstF5I	GGATG	1 cut(s)	1052
BstFNI	CGCG	2 cut(s)	257, 322
BstKTI	GATC	7 cut(s)	27, 56, 270, 671, 832, 873, 1031
BstMAI	GTCTC	3 cut(s)	60, 468, 689
BstMBI	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 324, 446
BstNI	CCWGG	1 cut(s)	1099
BstSCI	CCNGG	5 cut(s)	440, 441, 586, 763, 1097
BstUI	CGCG	2 cut(s)	257, 322
BstV1I	GCAGC	3 cut(s)	314, 632, 676
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	24, 829, 870
BstYI	RGATCY	3 cut(s)	24, 829, 870
BsuRI	GGCC	3 cut(s)	440, 1102, 1117
BtgI	CCRYGG	1 cut(s)	1061
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	1052
BtsI	GCAGTG	3 cut(s)	146, 313, 1112
BtsIMutI	CAGTG	3 cut(s)	146, 313, 1112
BtuMI	TCGCGA	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	320
CciI	TCATGA	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	439, 584, 972
Cfr9I	CCCGGG	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	5 cut(s)	18, 699, 732, 1039, 1062
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	4 cut(s)	58, 331, 433, 838
DpnI	GATC	7 cut(s)	26, 55, 269, 670, 831, 872, 1030
DpnII	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
DrdI	GACNNNNNNGTC	2 cut(s)	591, 733
DseDI	GACNNNNNNGTC	2 cut(s)	591, 733
EaeI	YGGCCR	2 cut(s)	1100, 1115
Eam1104I	CTCTTC	3 cut(s)	166, 851, 945
EarI	CTCTTC	3 cut(s)	166, 851, 945
Eco130I	CCWWGG	2 cut(s)	978, 1061
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	584, 972
Eco88I	CYCGRG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	1097
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	978, 1061
ErhI	CCWWGG	2 cut(s)	978, 1061
FaeI	CATG	5 cut(s)	21, 702, 735, 1042, 1065
FalI	AAGNNNNNCTT	2 cut(s)	1035, 1067
FaqI	GGGAC	4 cut(s)	549, 579, 597, 1093
FatI	CATG	5 cut(s)	17, 698, 731, 1038, 1061
FbaI	TGATCA	1 cut(s)	668
Fnu4HI	GCNGC	4 cut(s)	328, 621, 690, 1103
FokI	GGATG	1 cut(s)	1059
Fsp4HI	GCNGC	4 cut(s)	328, 621, 690, 1103
FspBI	CTAG	5 cut(s)	397, 418, 883, 979, 1126
GluI	GCNGC	4 cut(s)	328, 621, 690, 1103
HaeIII	GGCC	3 cut(s)	440, 1102, 1117
HapII	CCGG	3 cut(s)	442, 587, 764
Hin1II	CATG	5 cut(s)	21, 702, 735, 1042, 1065
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HinfI	GANTC	6 cut(s)	30, 132, 459, 642, 987, 1056
HpaII	CCGG	3 cut(s)	442, 587, 764
HphI	GGTGA	2 cut(s)	726, 780
Hpy166II	GTNNAC	1 cut(s)	903
Hpy188I	TCNGA	5 cut(s)	29, 53, 464, 911, 1033
Hpy188III	TCNNGA	6 cut(s)	18, 34, 321, 456, 705, 970
Hpy8I	GTNNAC	1 cut(s)	903
HpyAV	CCTTC	5 cut(s)	58, 503, 1037, 1064, 1069
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	357, 369, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 324, 446
HpyF3I	CTNAG	4 cut(s)	58, 331, 433, 838
Hsp92II	CATG	5 cut(s)	21, 702, 735, 1042, 1065
Ksp22I	TGATCA	1 cut(s)	668
Kzo9I	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
LguI	GCTCTTC	1 cut(s)	851
LmnI	GCTCC	1 cut(s)	686
Lsp1109I	GCAGC	3 cut(s)	314, 632, 676
LweI	GCATC	3 cut(s)	176, 314, 356
MaeI	CTAG	5 cut(s)	397, 418, 883, 979, 1126
MaeIII	GTNAC	2 cut(s)	570, 714
MalI	GATC	7 cut(s)	26, 55, 269, 670, 831, 872, 1030
MboI	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
MboII	GAAGA	9 cut(s)	18, 183, 240, 243, 273, 868, 948, 962, 996
MfeI	CAATTG	1 cut(s)	928
MflI	RGATCY	3 cut(s)	24, 829, 870
MlsI	TGGCCA	1 cut(s)	1117
MluCI	AATT	5 cut(s)	402, 563, 799, 812, 928
MluI	ACGCGT	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	1117
MlyI	GAGTC	1 cut(s)	1050
MmeI	TCCRAC	1 cut(s)	898
MnlI	CCTC	8 cut(s)	326, 337, 430, 439, 703, 739, 1028, 1080
Mox20I	TGGCCA	1 cut(s)	1117
MscI	TGGCCA	1 cut(s)	1117
MseI	TTAA	2 cut(s)	382, 496
MslI	CAYNNNNRTG	1 cut(s)	703
Msp20I	TGGCCA	1 cut(s)	1117
MspI	CCGG	3 cut(s)	442, 587, 764
MspR9I	CCNGG	5 cut(s)	442, 443, 588, 765, 1099
MunI	CAATTG	1 cut(s)	928
MvaI	CCWGG	1 cut(s)	1099
MvnI	CGCG	2 cut(s)	257, 322
MwoI	GCNNNNNNNGC	3 cut(s)	299, 324, 446
NciI	CCSGG	4 cut(s)	442, 443, 588, 765
NcoI	CCATGG	1 cut(s)	1061
NdeII	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
NlaIII	CATG	5 cut(s)	21, 702, 735, 1042, 1065
NlaIV	GGNNCC	2 cut(s)	585, 872
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	570, 714
NruI	TCGCGA	1 cut(s)	322
PagI	TCATGA	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	851
PfeI	GAWTC	5 cut(s)	30, 132, 459, 642, 987
PflFI	GACNNNGTC	1 cut(s)	700
PkrI	GCNGC	4 cut(s)	329, 622, 691, 1104
PleI	GAGTC	1 cut(s)	1050
PpsI	GAGTC	1 cut(s)	1050
Psp6I	CCWGG	1 cut(s)	1097
PspGI	CCWGG	1 cut(s)	1097
PspN4I	GGNNCC	2 cut(s)	585, 872
PspPI	GGNCC	3 cut(s)	439, 584, 972
PsuI	RGATCY	3 cut(s)	24, 829, 870
PsyI	GACNNNGTC	1 cut(s)	700
RruI	TCGCGA	1 cut(s)	322
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	703
SapI	GCTCTTC	1 cut(s)	851
SaqAI	TTAA	2 cut(s)	382, 496
SatI	GCNGC	4 cut(s)	328, 621, 690, 1103
Sau3AI	GATC	7 cut(s)	24, 53, 267, 668, 829, 870, 1028
Sau96I	GGNCC	3 cut(s)	439, 584, 972
SchI	GAGTC	1 cut(s)	1050
ScrFI	CCNGG	5 cut(s)	442, 443, 588, 765, 1099
SfaNI	GCATC	3 cut(s)	176, 314, 356
SinI	GGWCC	2 cut(s)	584, 972
SmaI	CCCGGG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	5 cut(s)	402, 563, 799, 812, 928
SsiI	CCGC	3 cut(s)	189, 506, 1103
SspMI	CTAG	5 cut(s)	397, 418, 883, 979, 1126
StyD4I	CCNGG	5 cut(s)	440, 441, 586, 763, 1097
StyI	CCWWGG	2 cut(s)	978, 1061
TaaI	ACNGT	1 cut(s)	86
TaqII	GACCGA	3 cut(s)	502, 556, 727
TasI	AATT	5 cut(s)	402, 563, 799, 812, 928
TauI	GCSGC	1 cut(s)	1105
TfiI	GAWTC	5 cut(s)	30, 132, 459, 642, 987
Tru1I	TTAA	2 cut(s)	382, 496
Tru9I	TTAA	2 cut(s)	382, 496
TscAI	CASTG	3 cut(s)	146, 320, 1112
TseFI	GTSAC	2 cut(s)	570, 714
TseI	GCWGC	3 cut(s)	327, 620, 689
Tsp45I	GTSAC	2 cut(s)	570, 714
TspDTI	ATGAA	6 cut(s)	34, 115, 775, 823, 949, 1027
TspMI	CCCGGG	1 cut(s)	441
TspRI	CASTG	3 cut(s)	146, 320, 1112
Tth111I	GACNNNGTC	1 cut(s)	700
VpaK11BI	GGWCC	2 cut(s)	584, 972
XapI	RAATTY	2 cut(s)	402, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1125
XmaI	CCCGGG	1 cut(s)	441
XmaJI	CCTAGG	1 cut(s)	978
XspI	CTAG	5 cut(s)	397, 418, 883, 979, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.