Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011030

Physical Location & Seq

Genomic Coordinates Forward (+)

25560452 .. 25562720

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATTGCCATGGCGTCCACCATTGCTCCCGCTGCTGCTACGTTTGTGTGCTCGCCGTCATCCACCGCCAGAGGCACAAAAGCAGCCGTATTTCGTTGCAAAGACCCGAAGTTTCAGCTCTGCTCAGTGGTTCCTCCACTGGGTCTCAGCCCTTTCTCGCCATGGATTGGATTGAAGCAGCTGGGCATTTCATTGGCGCCGAAGTCTTTGAAATTAGAGAGGAGGGGAAGGTGTAAGGGTATGGTGGTTTATGCATCCCTGTTTGGGGTTGGAGCTCCGGAGGCTCTCGTTATTGGCGTGGTGGCTCTGCTGGTTTTTGGTCCAAAAGGACTTGCTGAGGTTGCTCGGACTTTAGGAAAAACTTTGCGTGCTTTTCAACCCACCATTAGAGAACTTCAGGAAGTTTCGAGGGATTTCAAGAGCACCCTAGAAAAGGAGATCGGTCTTGATGACAATTCTAGTTCATCAATAGATGCATTCAATGGCAAGAAAATGGACATGACTTCAACCCCTTCATCAACTACCACGACTGGAGATTCCAAAACCACGATTGAAGATTCCAAAACCACGGCTGAAGATTCCAAAACTGTAGACGTTTCAAGTTTATCATCAATAGATGCGTACAATGCCAGAATAATGGGCAAGACTTCAACTTCTTCATCAACTACGACGGCTGATGAATCCAAGACCATGGCTGACACCAATGGGGCTCCATCACCACCCAGAGCATACACCACAGAAGAGTACTTAAAGATCACAGAGGAGCAGCTAGCAGCTGCCCAAAAGCAGGCGCAGGCGTCTGCTCCAGTGGAAAGTCAGCTTGAACCTCAGACCTTGTCTCAAGCTACTGTTGAAGAAACTGCTGCGGAAACGCCTTTACCCCTACAACCTCAAACTGTTGGAGAAGAAACTGCTGCCAGAACGCCTTCGCCTCAACAACCTCAAATTGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009941 GO:0009977 GO:0010119 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0017038 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0031323 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033281 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043953 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044743 GO:0045036 GO:0045038 GO:0045184 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098796 GO:0098797 GO:1902456 GO:1902458 GO:1903426 GO:1904680 GO:2000070 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

MttA_Hcf106

Protein Analysis

319

Amino Acids

33.57

Weight (kDa)

5.36

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	88 - 133	2.2e-15	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52440
fragaria_vesca	FvH4_7g29980 FvH4_7g29980 FvH4_7g29980
malus_domestica	MD07G1276100.v1.1
prunus_persica	Prupe.2G298400_v2.0.a1 Prupe.2G298400_v2.0.a1
pyrus_communis	pycom01g21530 pycom07g25130
rosa_chinensis	RchiOBHm_Chr1g0377931
rosa_laevigata	RLG00000026485
rosa_multiflora	Rmu_sc0002068.1_g000011 Rmu_sc0028245.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280930
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG425900 Rh1BG383200 Rh1CG397000 Rh1DG414200
rosa_wichuraiana	Rw1G037250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	591
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	3 cut(s)	30, 66, 866
AcuI	CTGAAG	2 cut(s)	380, 594
AcyI	GRCGYC	3 cut(s)	14, 197, 797
AfaI	GTAC	2 cut(s)	623, 746
AfiI	CCNNNNNNNGG	6 cut(s)	140, 167, 264, 265, 433, 787
AluBI	AGCT	7 cut(s)	118, 181, 275, 769, 776, 820, 845
AluI	AGCT	7 cut(s)	118, 181, 275, 769, 776, 820, 845
Alw21I	GWGCWC	3 cut(s)	53, 277, 425
Alw26I	GTCTC	3 cut(s)	149, 843, 944
Aor13HI	TCCGGA	1 cut(s)	277
ApeKI	GCWGC	9 cut(s)	32, 35, 83, 178, 766, 773, 776, 863, 914
Asp700I	GAANNNNTTC	1 cut(s)	925
AspLEI	GCGC	2 cut(s)	199, 793
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	708
AsuNHI	GCTAGC	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	277, 712
Bbv12I	GWGCWC	3 cut(s)	53, 277, 425
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	9 cut(s)	19, 22, 95, 190, 763, 778, 785, 850, 901
BccI	CCATC	1 cut(s)	721
BceAI	ACGGC	4 cut(s)	40, 71, 585, 687
BcoDI	GTCTC	3 cut(s)	149, 843, 944
BfaI	CTAG	3 cut(s)	428, 459, 770
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	9 cut(s)	33, 36, 84, 179, 767, 774, 777, 864, 915
BlsI	GCNGC	9 cut(s)	34, 37, 85, 180, 768, 775, 778, 865, 916
BmcAI	AGTACT	1 cut(s)	746
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	3 cut(s)	132, 198, 711
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	3 cut(s)	263, 463, 607
BmtI	GCTAGC	1 cut(s)	773
BmuI	ACTGGG	1 cut(s)	149
BpmI	CTGGAG	2 cut(s)	552, 789
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	825
BsaHI	GRCGYC	3 cut(s)	14, 197, 797
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	9, 161, 567, 690
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	6 cut(s)	140, 167, 264, 265, 433, 787
Bse1I	ACTGG	3 cut(s)	144, 535, 806
Bse3DI	GCAATG	1 cut(s)	21
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	4 cut(s)	9, 161, 567, 690
BseGI	GGATG	2 cut(s)	59, 254
BseLI	CCNNNNNNNGG	6 cut(s)	140, 167, 264, 265, 433, 787
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	4 cut(s)	138, 160, 327, 842
BseNI	ACTGG	3 cut(s)	144, 535, 806
BseRI	GAGGAG	2 cut(s)	235, 776
BseXI	GCAGC	9 cut(s)	19, 22, 95, 190, 763, 778, 785, 850, 901
BseYI	CCCAGC	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	3 cut(s)	53, 277, 425
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	6 cut(s)	140, 167, 264, 265, 433, 787
BsmAI	GTCTC	3 cut(s)	149, 843, 944
BsmI	GAATGC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	4 cut(s)	53, 277, 425, 712
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	438, 753
Bsp19I	CCATGG	3 cut(s)	9, 161, 690
BspACI	CCGC	3 cut(s)	30, 66, 866
BspCNI	CTCAG	4 cut(s)	137, 159, 328, 841
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	132, 198, 711
BspOI	GCTAGC	1 cut(s)	773
BspT107I	GGYRCC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	3 cut(s)	144, 535, 806
BssECI	CCNNGG	4 cut(s)	9, 161, 567, 690
BssMI	GATC	2 cut(s)	438, 753
BssNI	GRCGYC	3 cut(s)	14, 197, 797
BssT1I	CCWWGG	3 cut(s)	9, 161, 690
Bst4CI	ACNGT	3 cut(s)	589, 850, 898
Bst6I	CTCTTC	1 cut(s)	735
BstACI	GRCGYC	3 cut(s)	14, 197, 797
BstC8I	GCNNGC	5 cut(s)	53, 369, 771, 789, 795
BstDEI	CTNAG	4 cut(s)	124, 146, 336, 828
BstDSI	CCRYGG	4 cut(s)	9, 161, 567, 690
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	59, 254
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	199, 793
BstKTI	GATC	2 cut(s)	441, 756
BstMAI	GTCTC	3 cut(s)	149, 843, 944
BstMBI	GATC	2 cut(s)	438, 753
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 281, 341, 626
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	9 cut(s)	19, 22, 95, 190, 763, 778, 785, 850, 901
BstXI	CCANNNNNNTGG	2 cut(s)	637, 691
BtgI	CCRYGG	4 cut(s)	9, 161, 567, 690
BtsCI	GGATG	2 cut(s)	59, 254
BtsIMutI	CAGTG	3 cut(s)	132, 137, 813
Cac8I	GCNNGC	5 cut(s)	53, 369, 771, 789, 795
CfoI	GCGC	2 cut(s)	199, 793
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	2 cut(s)	3, 786
Csp6I	GTAC	2 cut(s)	622, 745
CviAII	CATG	4 cut(s)	10, 162, 499, 691
CviQI	GTAC	2 cut(s)	622, 745
DdeI	CTNAG	4 cut(s)	124, 146, 336, 828
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	2 cut(s)	440, 755
DpnII	GATC	2 cut(s)	438, 753
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	3 cut(s)	9, 161, 690
Eco24I	GRGCYC	2 cut(s)	277, 712
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	380, 594
EcoICRI	GAGCTC	1 cut(s)	275
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoT14I	CCWWGG	3 cut(s)	9, 161, 690
EcoT22I	ATGCAT	2 cut(s)	256, 478
EcoT38I	GRGCYC	2 cut(s)	277, 712
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	3 cut(s)	9, 161, 690
FaeI	CATG	4 cut(s)	13, 165, 502, 694
FaiI	YATR	8 cut(s)	11, 163, 242, 252, 500, 692, 730, 955
FatI	CATG	4 cut(s)	9, 161, 498, 690
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	9 cut(s)	33, 36, 84, 179, 767, 774, 777, 864, 915
FokI	GGATG	2 cut(s)	46, 241
FriOI	GRGCYC	2 cut(s)	277, 712
Fsp4HI	GCNGC	9 cut(s)	33, 36, 84, 179, 767, 774, 777, 864, 915
FspBI	CTAG	3 cut(s)	428, 459, 770
GlaI	GCGC	2 cut(s)	198, 792
GluI	GCNGC	9 cut(s)	33, 36, 84, 179, 767, 774, 777, 864, 915
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	2 cut(s)	552, 789
HaeII	RGCGCY	1 cut(s)	200
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	2 cut(s)	3, 786
HhaI	GCGC	2 cut(s)	199, 793
Hin1I	GRCGYC	3 cut(s)	14, 197, 797
Hin1II	CATG	4 cut(s)	13, 165, 502, 694
Hin6I	GCGC	2 cut(s)	197, 791
HinP1I	GCGC	2 cut(s)	197, 791
HinfI	GANTC	4 cut(s)	536, 557, 578, 680
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	708
Hpy166II	GTNNAC	2 cut(s)	18, 592
Hpy188I	TCNGA	2 cut(s)	348, 831
Hpy188III	TCNNGA	4 cut(s)	278, 398, 418, 446
Hpy8I	GTNNAC	2 cut(s)	18, 592
Hpy99I	CGWCG	1 cut(s)	673
HpyAV	CCTTC	3 cut(s)	222, 522, 936
HpyCH4III	ACNGT	3 cut(s)	589, 850, 898
HpyCH4IV	ACGT	2 cut(s)	41, 594
HpyCH4V	TGCA	3 cut(s)	99, 254, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 281, 341, 626
HpyF3I	CTNAG	4 cut(s)	124, 146, 336, 828
HpySE526I	ACGT	2 cut(s)	41, 594
Hsp92I	GRCGYC	3 cut(s)	14, 197, 797
Hsp92II	CATG	4 cut(s)	13, 165, 502, 694
HspAI	GCGC	2 cut(s)	197, 791
KasI	GGCGCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	438, 753
LmnI	GCTCC	6 cut(s)	31, 272, 280, 715, 763, 808
Lsp1109I	GCAGC	9 cut(s)	19, 22, 95, 190, 763, 778, 785, 850, 901
LweI	GCATC	3 cut(s)	263, 463, 607
MaeI	CTAG	3 cut(s)	428, 459, 770
MaeII	ACGT	2 cut(s)	41, 594
MalI	GATC	2 cut(s)	440, 755
MboI	GATC	2 cut(s)	438, 753
MboII	GAAGA	6 cut(s)	566, 587, 648, 752, 866, 917
MhlI	GDGCHC	4 cut(s)	53, 277, 425, 712
MluCI	AATT	3 cut(s)	212, 454, 945
Mly113I	GGCGCC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	250, 880
Mph1103I	ATGCAT	2 cut(s)	256, 478
MroI	TCCGGA	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	925
MseI	TTAA	1 cut(s)	749
MspA1I	CMGCKG	3 cut(s)	32, 181, 776
MspI	CCGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	32, 281, 341, 626
NarI	GGCGCC	1 cut(s)	197
NcoI	CCATGG	3 cut(s)	9, 161, 690
NdeII	GATC	2 cut(s)	438, 753
NheI	GCTAGC	1 cut(s)	769
NlaIII	CATG	4 cut(s)	13, 165, 502, 694
NlaIV	GGNNCC	3 cut(s)	132, 198, 711
NsiI	ATGCAT	2 cut(s)	256, 478
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	925
PfeI	GAWTC	4 cut(s)	536, 557, 578, 680
PflFI	GACNNNGTC	1 cut(s)	835
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	9 cut(s)	34, 37, 85, 180, 768, 775, 778, 865, 916
PluTI	GGCGCC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	132, 198, 711
PspPI	GGNCC	1 cut(s)	320
PsyI	GACNNNGTC	1 cut(s)	835
PvuII	CAGCTG	2 cut(s)	181, 776
RsaI	GTAC	2 cut(s)	623, 746
RsaNI	GTAC	2 cut(s)	622, 745
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	749
SatI	GCNGC	9 cut(s)	33, 36, 84, 179, 767, 774, 777, 864, 915
Sau3AI	GATC	2 cut(s)	438, 753
Sau96I	GGNCC	1 cut(s)	320
ScaI	AGTACT	1 cut(s)	746
SduI	GDGCHC	4 cut(s)	53, 277, 425, 712
SfaNI	GCATC	3 cut(s)	263, 463, 607
SfcI	CTRYAG	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
Sse9I	AATT	3 cut(s)	212, 454, 945
SsiI	CCGC	3 cut(s)	30, 66, 866
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	3 cut(s)	428, 459, 770
SstI	GAGCTC	1 cut(s)	277
StyI	CCWWGG	3 cut(s)	9, 161, 690
TaaI	ACNGT	3 cut(s)	589, 850, 898
TaiI	ACGT	2 cut(s)	44, 597
TaqI	TCGA	1 cut(s)	407
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	3 cut(s)	212, 454, 945
TatI	WGTACW	1 cut(s)	744
TfiI	GAWTC	4 cut(s)	536, 557, 578, 680
Tru1I	TTAA	1 cut(s)	749
Tru9I	TTAA	1 cut(s)	749
TscAI	CASTG	3 cut(s)	132, 144, 813
TseI	GCWGC	9 cut(s)	32, 35, 83, 178, 766, 773, 776, 863, 914
TspDTI	ATGAA	5 cut(s)	180, 453, 504, 648, 693
TspRI	CASTG	3 cut(s)	132, 144, 813
Tth111I	GACNNNGTC	1 cut(s)	835
Van91I	CCANNNNNTGG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	925
XspI	CTAG	3 cut(s)	428, 459, 770
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	2 cut(s)	256, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.