pycom08g01970

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015236
Physical Location & Seq
Reverse (-)
1438002 .. 1439680
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 825 bp
ATGGCAGTCTTCAAAGCAACTTTGTTAGGTCTTGTAGTTGTGACATTGGTCTCAGCCACGCTTTCCGGTGCTCACCTGGAGGATTTCAACTTTGGGTCCGGCGGGTCTCACGGTCTTTTGCCACAATTCTATCAATCGTCGTGCCCTCAGGTTAATGACATTGTCATCTCCGTGCTACAGCGTGCCATTGAGATGGATCCCCGGGTAGCGGCCTCTTTGCTTAGGCTTCACTTCCATGACTGTTTTGCTCTGGGTTGTGACGCCTCGGTGCTACTAGACAACAGTACGACGATACAGAGCGAAAAGGGGGCATCAACAAACGTGAATTCTCTCAGAGGGTTTGAAGTGATTGATGATATCAAGACCAAGCTAGAAGAAGCATGTCCCCTGACTGTATCATGCGCTGACATTGTCGCCCTTGCTGCTAGGGGATCCATTGTACTGGTAAGCAAACTAATTACATACTCAAAAGTCGGAGGGCATACAATTGGGTTCGCGAAGTGTTCGTTCGTCAGGCAGACTCGGAAATCAGTTTGCCCCAGAAGAGGTGGCGACAACACACCTGCTCCCTTGGACTTTGTTTCCCCTACAAGGTTCGACAACAGCTACTTCAAGCTTATAGTTGGGGGACATGGACTTCTCCCTTCAGACCAAGTGCTTCTGACCGGGAATGGAAGGCAGGCAGCTGAGCTGGTGAAAACCTATGCAACTAATGAGAGCTTATTCTTTCAGCAGTTTGCCGAGTCCATGGTTAAGATGGGGAACATTAATCCTCTCACTGGATTAAAGGGACAAGTCCGGAAGAATTGTCGCCACGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

275

Amino Acids

29.46

Weight (kDa)

8.62

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 57 - 150 9.7e-32 Peroxidase
peroxidase PF00141 158 - 238 7.8e-13 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 571
Acc36I ACCTGC 1 cut(s) 571
AccII CGCG 1 cut(s) 497
AccIII TCCGGA 1 cut(s) 798
AciI CCGC 2 cut(s) 102, 209
AclWI GGATC 4 cut(s) 191, 204, 426, 439
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 286, 441
AfiI CCNNNNNNNGG 4 cut(s) 208, 545, 591, 779
AgsI TTSAA 4 cut(s) 13, 88, 344, 613
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 6 cut(s) 370, 606, 616, 686, 691, 720
AluI AGCT 6 cut(s) 370, 606, 616, 686, 691, 720
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 55, 111
AlwI GGATC 4 cut(s) 191, 204, 426, 439
Ama87I CYCGRG 1 cut(s) 201
Aor13HI TCCGGA 1 cut(s) 798
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 422, 683
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 768
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 3 cut(s) 202, 203, 667
AsuHPI GGTGA 2 cut(s) 65, 706
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 96
AxyI CCTNAGG 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 146
BamHI GGATCC 2 cut(s) 196, 431
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 409, 695
BccI CCATC 2 cut(s) 187, 751
BciT130I CCWGG 1 cut(s) 77
BcnI CCSGG 3 cut(s) 202, 203, 667
BcoDI GTCTC 2 cut(s) 55, 111
BfaI CTAG 3 cut(s) 275, 371, 426
BfmI CTRYAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 571
BisI GCNGC 3 cut(s) 210, 423, 684
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 3 cut(s) 211, 424, 685
Bme1390I CCNGG 4 cut(s) 77, 202, 203, 667
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 3 cut(s) 97, 198, 433
BmrFI CCNGG 4 cut(s) 77, 202, 203, 667
BmsI GCATC 1 cut(s) 320
BoxI GACNNNNGTC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 687
BpuMI CCSGG 3 cut(s) 202, 203, 667
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 2 cut(s) 55, 111
BsaJI CCNNGG 5 cut(s) 200, 201, 264, 570, 747
BsaWI WCCGGW 2 cut(s) 65, 798
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 545, 591, 779
Bse1I ACTGG 2 cut(s) 447, 784
Bse21I CCTNAGG 1 cut(s) 147
BseAI TCCGGA 1 cut(s) 798
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 5 cut(s) 200, 201, 264, 570, 747
BseLI CCNNNNNNNGG 4 cut(s) 208, 545, 591, 779
BseMII CTCAG 4 cut(s) 66, 161, 346, 678
BseNI ACTGG 2 cut(s) 447, 784
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 2 cut(s) 409, 695
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 5 cut(s) 66, 99, 202, 666, 799
BslFI GGGAC 3 cut(s) 369, 642, 804
BslI CCNNNNNNNGG 4 cut(s) 208, 545, 591, 779
BsmAI GTCTC 2 cut(s) 55, 111
BsmFI GGGAC 3 cut(s) 369, 642, 804
BsnI GGCC 1 cut(s) 212
Bso31I GGTCTC 2 cut(s) 55, 111
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 73, 146
Bsp13I TCCGGA 1 cut(s) 798
Bsp143I GATC 2 cut(s) 196, 431
Bsp1720I GCTNAGC 1 cut(s) 687
Bsp19I CCATGG 1 cut(s) 747
Bsp68I TCGCGA 1 cut(s) 497
BspACI CCGC 2 cut(s) 102, 209
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 4 cut(s) 65, 160, 345, 679
BspEI TCCGGA 1 cut(s) 798
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 3 cut(s) 97, 198, 433
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 4 cut(s) 191, 204, 426, 439
BspTNI GGTCTC 2 cut(s) 55, 111
BsrI ACTGG 2 cut(s) 447, 784
BssECI CCNNGG 5 cut(s) 200, 201, 264, 570, 747
BssMI GATC 2 cut(s) 196, 431
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 570, 747
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 4 cut(s) 113, 242, 284, 394
Bst6I CTCTTC 1 cut(s) 538
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 183, 681
BstDEI CTNAG 5 cut(s) 52, 147, 221, 332, 687
BstDSI CCRYGG 1 cut(s) 747
BstFNI CGCG 1 cut(s) 497
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 2 cut(s) 199, 434
BstMAI GTCTC 2 cut(s) 55, 111
BstMBI GATC 2 cut(s) 196, 431
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 384
BstPAI GACNNNNGTC 1 cut(s) 47
BstSCI CCNGG 4 cut(s) 75, 200, 201, 665
BstSFI CTRYAG 1 cut(s) 176
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 2 cut(s) 409, 695
BstX2I RGATCY 2 cut(s) 196, 431
BstXI CCANNNNNNTGG 2 cut(s) 193, 442
BstYI RGATCY 2 cut(s) 196, 431
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 747
BtsIMutI CAGTG 1 cut(s) 777
BtuMI TCGCGA 1 cut(s) 497
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 183, 681
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 96
Cfr9I CCCGGG 1 cut(s) 201
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 285, 440
CviAII CATG 5 cut(s) 236, 381, 399, 632, 748
CviJI RGCY 9 cut(s) 56, 212, 226, 370, 606, 616, 686, 691, 720
CviKI_1 RGCY 9 cut(s) 56, 212, 226, 370, 606, 616, 686, 691, 720
CviQI GTAC 2 cut(s) 285, 440
DdeI CTNAG 5 cut(s) 52, 147, 221, 332, 687
DpnI GATC 2 cut(s) 198, 433
DpnII GATC 2 cut(s) 196, 431
Eam1104I CTCTTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 570, 747
Eco31I GGTCTC 2 cut(s) 55, 111
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 630
Eco81I CCTNAGG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 75
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 570, 747
ErhI CCWWGG 2 cut(s) 570, 747
FaeI CATG 5 cut(s) 239, 384, 402, 635, 751
FaiI YATR 9 cut(s) 237, 382, 400, 463, 483, 620, 633, 705, 749
FaqI GGGAC 3 cut(s) 369, 642, 804
FatI CATG 5 cut(s) 235, 380, 398, 631, 747
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 3 cut(s) 210, 423, 684
Fsp4HI GCNGC 3 cut(s) 210, 423, 684
FspBI CTAG 3 cut(s) 275, 371, 426
GlaI GCGC 1 cut(s) 403
GluI GCNGC 3 cut(s) 210, 423, 684
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 212
HapII CCGG 5 cut(s) 66, 99, 202, 666, 799
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 5 cut(s) 239, 384, 402, 635, 751
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 2 cut(s) 520, 743
HpaII CCGG 5 cut(s) 66, 99, 202, 666, 799
HphI GGTGA 2 cut(s) 65, 706
Hpy188I TCNGA 5 cut(s) 335, 476, 525, 649, 663
Hpy188III TCNNGA 3 cut(s) 361, 496, 799
Hpy99I CGWCG 2 cut(s) 142, 292
HpyAV CCTTC 2 cut(s) 654, 669
HpyCH4III ACNGT 4 cut(s) 113, 242, 284, 394
HpyCH4IV ACGT 2 cut(s) 321, 816
HpyCH4V TGCA 1 cut(s) 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 5 cut(s) 52, 147, 221, 332, 687
HpySE526I ACGT 2 cut(s) 321, 816
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 5 cut(s) 239, 384, 402, 635, 751
HspAI GCGC 1 cut(s) 402
Kpn2I TCCGGA 1 cut(s) 798
Kzo9I GATC 2 cut(s) 196, 431
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 2 cut(s) 409, 695
LweI GCATC 1 cut(s) 320
MaeI CTAG 3 cut(s) 275, 371, 426
MaeII ACGT 2 cut(s) 321, 816
MaeIII GTNAC 2 cut(s) 40, 257
MalI GATC 2 cut(s) 198, 433
MboI GATC 2 cut(s) 196, 431
MboII GAAGA 3 cut(s) 386, 555, 814
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 196, 431
MhlI GDGCHC 2 cut(s) 73, 146
MluCI AATT 6 cut(s) 125, 325, 456, 486, 805, 820
MlyI GAGTC 2 cut(s) 514, 752
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 8 cut(s) 73, 156, 223, 274, 329, 470, 539, 783
MroI TCCGGA 1 cut(s) 798
MseI TTAA 6 cut(s) 153, 753, 768, 785, 819, 823
MslI CAYNNNNRTG 3 cut(s) 170, 191, 234
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 5 cut(s) 66, 99, 202, 666, 799
MspR9I CCNGG 4 cut(s) 77, 202, 203, 667
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 3 cut(s) 202, 203, 667
NcoI CCATGG 1 cut(s) 747
NdeII GATC 2 cut(s) 196, 431
NlaIII CATG 5 cut(s) 239, 384, 402, 635, 751
NlaIV GGNNCC 3 cut(s) 97, 198, 433
NmeAIII GCCGAG 1 cut(s) 766
NmuCI GTSAC 2 cut(s) 40, 257
NruI TCGCGA 1 cut(s) 497
NspI RCATGY 1 cut(s) 384
PacI TTAATTAA 1 cut(s) 823
PaqCI CACCTGC 1 cut(s) 571
PflFI GACNNNGTC 2 cut(s) 161, 410
PkrI GCNGC 3 cut(s) 211, 424, 685
PleI GAGTC 2 cut(s) 514, 751
PpsI GAGTC 2 cut(s) 514, 751
PshAI GACNNNNGTC 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 97, 198, 433
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 2 cut(s) 196, 431
PsyI GACNNNGTC 2 cut(s) 161, 410
PvuII CAGCTG 1 cut(s) 686
RruI TCGCGA 1 cut(s) 497
RsaI GTAC 2 cut(s) 286, 441
RsaNI GTAC 2 cut(s) 285, 440
RseI CAYNNNNRTG 3 cut(s) 170, 191, 234
SaqAI TTAA 6 cut(s) 153, 753, 768, 785, 819, 823
SatI GCNGC 3 cut(s) 210, 423, 684
Sau3AI GATC 2 cut(s) 196, 431
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 2 cut(s) 514, 752
ScrFI CCNGG 4 cut(s) 77, 202, 203, 667
SduI GDGCHC 2 cut(s) 73, 146
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 96
SmaI CCCGGG 1 cut(s) 203
SmiMI CAYNNNNRTG 3 cut(s) 170, 191, 234
Sse9I AATT 6 cut(s) 125, 325, 456, 486, 805, 820
SsiI CCGC 2 cut(s) 102, 209
SspMI CTAG 3 cut(s) 275, 371, 426
StyD4I CCNGG 4 cut(s) 75, 200, 201, 665
StyI CCWWGG 2 cut(s) 570, 747
TaaI ACNGT 4 cut(s) 113, 242, 284, 394
TaiI ACGT 2 cut(s) 324, 819
TaqI TCGA 1 cut(s) 597
TasI AATT 6 cut(s) 125, 325, 456, 486, 805, 820
TatI WGTACW 1 cut(s) 439
TauI GCSGC 1 cut(s) 212
Tru1I TTAA 6 cut(s) 153, 753, 768, 785, 819, 823
Tru9I TTAA 6 cut(s) 153, 753, 768, 785, 819, 823
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 2 cut(s) 40, 257
TseI GCWGC 2 cut(s) 422, 683
Tsp45I GTSAC 2 cut(s) 40, 257
TspGWI ACGGA 1 cut(s) 160
TspMI CCCGGG 1 cut(s) 201
TspRI CASTG 1 cut(s) 784
Tth111I GACNNNGTC 2 cut(s) 161, 410
VpaK11BI GGWCC 1 cut(s) 96
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XmaI CCCGGG 1 cut(s) 201
XspI CTAG 3 cut(s) 275, 371, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.