pycom08g04600

YbaB/EbfC DNA-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0003152
Physical Location & Seq
Forward (+)
3478336 .. 3481454
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGTCCCTAGCAAATATTATATCTCTAACTTTTCCACCACCCTATCCAAAAACACAGAGACAGCGCGAGAGAGTGGCAGTGAATTACACCCTCTTCCTTCCCTTAAGTAAACGACAACTTGTACTTTTTCGCTTCTTCTATCTTCTTCCTCTCTCTCTCACTCCGTCAATGGCGTCGACCAGTGCTTTAAGCTCCCGGCTTTCCAACTTCCACCGCCTCACCGACTCCCAGGAGCACCTCTCTTTCCGTGAAGTAGTAAACTCACATTCAGCATGTCCTTCAATTGTTTCTTGGCCTGGTGTTAAGACCGGGAGGGCATCCCGTTCCTCCCGTGTGTATGGCTTATTTGGAGGAGGAAAAAAGGATAACACTGAAAAGGGTGATGATGCAGCTTCAAAGGCCGGAATATTCGGTAATATGCAAAATCTGTATGAAACAGTTAAGAAAGCTCAAAATGTAGTACAAGTTGAAGCAGTGCGTGTGCAGAAAGAGCTTGCTGCGGCAGAGTTTGATGGTTACTGTGAAGGTGAGATAATAAAGGTAACCCTTTCTGGTAACCAGCAACCCGTACGCACTGAGATAACTGAGGCTGCTATGGAACTAGGAGCAGAAAAAGTCTCCGAATTGGTCACGGAAGCATACAAGGATGCGCATCAGAAGAGTGTCGTGGCCATGAAGGAGAGAATGAGCAACCTTGCCCAGAGTTTAGGAATGCCACCAGGCCTGGGGGAATCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YbaB_DNA_bd

Protein Analysis

247

Amino Acids

27.06

Weight (kDa)

9.28

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YbaB_DNA_bd PF02575 148 - 235 2.2e-14 YbaB/EbfC DNA-binding family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 651
AccI GTMKAC 1 cut(s) 176
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 214, 500
AcoI YGGCCR 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 3 cut(s) 123, 462, 570
AfiI CCNNNNNNNGG 1 cut(s) 725
AflII CTTAAG 1 cut(s) 103
AgsI TTSAA 3 cut(s) 282, 396, 470
AjnI CCWGG 4 cut(s) 228, 295, 718, 723
AluBI AGCT 4 cut(s) 192, 392, 449, 493
AluI AGCT 4 cut(s) 192, 392, 449, 493
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 52, 622
AoxI GGCC 4 cut(s) 293, 399, 669, 721
ApeKI GCWGC 3 cut(s) 389, 497, 590
AspLEI GCGC 2 cut(s) 66, 652
AsuC2I CCSGG 2 cut(s) 196, 310
AsuHPI GGTGA 3 cut(s) 211, 392, 539
BalI TGGCCA 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 401, 484, 577
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 4 cut(s) 230, 297, 720, 725
BcnI CCSGG 2 cut(s) 196, 310
BcoDI GTCTC 2 cut(s) 52, 622
BfaI CTAG 2 cut(s) 8, 602
BfrI CTTAAG 1 cut(s) 103
BisI GCNGC 4 cut(s) 390, 498, 501, 591
BlsI GCNGC 4 cut(s) 391, 499, 502, 592
Bme1390I CCNGG 6 cut(s) 196, 230, 297, 310, 720, 725
BmrFI CCNGG 6 cut(s) 196, 230, 297, 310, 720, 725
BmsI GCATC 4 cut(s) 326, 376, 637, 661
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpuMI CCSGG 2 cut(s) 196, 310
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 228, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 4 cut(s) 230, 297, 720, 725
BseDI CCNNGG 2 cut(s) 228, 724
BseGI GGATG 2 cut(s) 317, 652
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMII CTCAG 2 cut(s) 567, 576
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 3 cut(s) 401, 484, 577
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 4 cut(s) 295, 401, 671, 723
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 3 cut(s) 196, 309, 402
BsiWI CGTACG 1 cut(s) 568
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 2 cut(s) 52, 622
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 4 cut(s) 295, 401, 671, 723
Bsp1286I GDGCHC 1 cut(s) 237
BspACI CCGC 2 cut(s) 214, 500
BspANI GGCC 4 cut(s) 295, 401, 671, 723
BspCNI CTCAG 2 cut(s) 568, 577
BspFNI CGCG 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 228, 724
BssNI GRCGYC 1 cut(s) 173
Bst2UI CCWGG 4 cut(s) 230, 297, 720, 725
Bst4CI ACNGT 2 cut(s) 439, 521
Bst6I CTCTTC 2 cut(s) 98, 653
BstACI GRCGYC 1 cut(s) 173
BstAFI CTTAAG 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 2 cut(s) 576, 585
BstEII GGTNACC 2 cut(s) 541, 554
BstF5I GGATG 2 cut(s) 317, 652
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 2 cut(s) 66, 652
BstMAI GTCTC 2 cut(s) 52, 622
BstMWI GCNNNNNNNGC 2 cut(s) 398, 490
BstNI CCWGG 4 cut(s) 230, 297, 720, 725
BstNSI RCATGY 1 cut(s) 276
BstPI GGTNACC 2 cut(s) 541, 554
BstSCI CCNGG 6 cut(s) 194, 228, 295, 308, 718, 723
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 401, 484, 577
BsuRI GGCC 4 cut(s) 295, 401, 671, 723
BtsCI GGATG 2 cut(s) 317, 652
BtsI GCAGTG 2 cut(s) 84, 480
BtsIMutI CAGTG 5 cut(s) 84, 187, 369, 480, 573
Cac8I GCNNGC 1 cut(s) 495
CfoI GCGC 2 cut(s) 66, 652
CseI GACGC 1 cut(s) 162
Csp6I GTAC 3 cut(s) 122, 461, 569
CviAII CATG 2 cut(s) 273, 673
CviQI GTAC 3 cut(s) 122, 461, 569
DdeI CTNAG 2 cut(s) 576, 585
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 98, 653
EarI CTCTTC 2 cut(s) 98, 653
Eco147I AGGCCT 1 cut(s) 723
Eco91I GGTNACC 2 cut(s) 541, 554
EcoO65I GGTNACC 2 cut(s) 541, 554
EcoRII CCWGG 4 cut(s) 228, 295, 718, 723
FaeI CATG 2 cut(s) 276, 676
FaiI YATR 8 cut(s) 20, 274, 339, 419, 432, 596, 640, 674
FatI CATG 2 cut(s) 272, 672
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 4 cut(s) 390, 498, 501, 591
FokI GGATG 2 cut(s) 304, 659
Fsp4HI GCNGC 4 cut(s) 390, 498, 501, 591
FspAI RTGCGCAY 1 cut(s) 651
FspBI CTAG 2 cut(s) 8, 602
FspI TGCGCA 1 cut(s) 651
GlaI GCGC 2 cut(s) 65, 651
GluI GCNGC 4 cut(s) 390, 498, 501, 591
HaeIII GGCC 4 cut(s) 295, 401, 671, 723
HapII CCGG 3 cut(s) 196, 309, 402
HgaI GACGC 1 cut(s) 162
HhaI GCGC 2 cut(s) 66, 652
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 2 cut(s) 276, 676
Hin6I GCGC 2 cut(s) 64, 650
HinP1I GCGC 2 cut(s) 64, 650
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 2 cut(s) 224, 731
HpaII CCGG 3 cut(s) 196, 309, 402
HphI GGTGA 3 cut(s) 211, 392, 539
Hpy166II GTNNAC 3 cut(s) 110, 177, 259
Hpy188I TCNGA 2 cut(s) 622, 657
Hpy8I GTNNAC 3 cut(s) 110, 177, 259
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 4 cut(s) 107, 288, 518, 670
HpyCH4III ACNGT 2 cut(s) 439, 521
HpyCH4V TGCA 3 cut(s) 389, 421, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 490
HpyF3I CTNAG 2 cut(s) 576, 585
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 276, 676
HspAI GCGC 2 cut(s) 64, 650
LmnI GCTCC 3 cut(s) 197, 232, 605
Lsp1109I GCAGC 3 cut(s) 401, 484, 577
LweI GCATC 4 cut(s) 326, 376, 637, 661
MaeI CTAG 2 cut(s) 8, 602
MaeIII GTNAC 4 cut(s) 515, 541, 554, 628
MboII GAAGA 5 cut(s) 85, 127, 134, 137, 670
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 3 cut(s) 82, 282, 623
MluNI TGGCCA 1 cut(s) 671
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 9 cut(s) 101, 159, 227, 248, 306, 337, 344, 347, 580
Mox20I TGGCCA 1 cut(s) 671
MscI TGGCCA 1 cut(s) 671
MseI TTAA 4 cut(s) 104, 188, 303, 441
Msp20I TGGCCA 1 cut(s) 671
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 3 cut(s) 196, 309, 402
MspR9I CCNGG 6 cut(s) 196, 230, 297, 310, 720, 725
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 4 cut(s) 230, 297, 720, 725
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 398, 490
NciI CCSGG 2 cut(s) 196, 310
NlaIII CATG 2 cut(s) 276, 676
NmuCI GTSAC 1 cut(s) 628
NsbI TGCGCA 1 cut(s) 651
NspI RCATGY 1 cut(s) 276
PceI AGGCCT 1 cut(s) 723
PctI GAATGC 1 cut(s) 717
PfeI GAWTC 1 cut(s) 731
Pfl23II CGTACG 1 cut(s) 568
PkrI GCNGC 4 cut(s) 391, 499, 502, 592
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 4 cut(s) 228, 295, 718, 723
PspEI GGTNACC 2 cut(s) 541, 554
PspGI CCWGG 4 cut(s) 228, 295, 718, 723
PspLI CGTACG 1 cut(s) 568
RsaI GTAC 3 cut(s) 123, 462, 570
RsaNI GTAC 3 cut(s) 122, 461, 569
SalI GTCGAC 1 cut(s) 175
SaqAI TTAA 4 cut(s) 104, 188, 303, 441
SatI GCNGC 4 cut(s) 390, 498, 501, 591
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 6 cut(s) 196, 230, 297, 310, 720, 725
SduI GDGCHC 1 cut(s) 237
SetI ASST 8 cut(s) 194, 240, 394, 451, 495, 529, 543, 696
SfaNI GCATC 4 cut(s) 326, 376, 637, 661
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 3 cut(s) 82, 282, 623
SseBI AGGCCT 1 cut(s) 723
SsiI CCGC 2 cut(s) 214, 500
SspI AATATT 2 cut(s) 16, 408
SspMI CTAG 2 cut(s) 8, 602
StuI AGGCCT 1 cut(s) 723
StyD4I CCNGG 6 cut(s) 194, 228, 295, 308, 718, 723
TaaI ACNGT 2 cut(s) 439, 521
TaqI TCGA 2 cut(s) 176, 734
TasI AATT 3 cut(s) 82, 282, 623
TatI WGTACW 2 cut(s) 121, 460
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 731
Tru1I TTAA 4 cut(s) 104, 188, 303, 441
Tru9I TTAA 4 cut(s) 104, 188, 303, 441
TscAI CASTG 5 cut(s) 84, 187, 376, 480, 580
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 3 cut(s) 389, 497, 590
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 2 cut(s) 447, 689
TspGWI ACGGA 3 cut(s) 153, 236, 647
TspRI CASTG 5 cut(s) 84, 187, 376, 480, 580
Vha464I CTTAAG 1 cut(s) 103
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 2 cut(s) 8, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.