pycom08g09720

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013568
Physical Location & Seq
Forward (+)
8097963 .. 8100685
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGAAACCATCGCACGCCCAAAAGGTTTTCATCGTTTGTGCAAAATTATATTATTTACTAATAATAATATTTGTTTCCGGAGGAAAAGGAAGCTGCATCATGAGGGCCCACTCACTCATCGCTGCTCGTCAACAACCTCCGCAATCCAGGTCACCAAGCACTACGCTCTCACAATTGGGACCTTCTCCGTCCCACACGTGTCTCCCCGTACCTCCCTCCCCGCCAAAACTGTCCTATAAATGCCGGACCAAGTCACACGCCAGAAGCAGCAGATCAAAACTCAGTGACTGTGAAGTGAGCGAAATGGACGCTCAGAAGCTTCGCTCGGAGTTCCTCCAAGTTCTGCGCAGCAGACGATCGGGCGAAGTTCCAATGTTGGTTGAGCCGGCGAAACCGGTGGCGAATCCGTTGTTTCAGGAGGCTAATCCAGCAAGCTTCAGTGAGGCAATGAACGCTTGTCCGAAAGCCAGCATCCCCGATTTCAAGGATAAGCTGCAAGAAGAAAACCTTTACTTAATTACTGAGGCAGGAGAGCAAGGGCGGTTGCCCGTGTTAATTTTGAGCATGAAGGAAAATTGTACCCAGAAAAGGCCTGCTGTTGTCTTTCTGCATAGTACAAACAAGAACAAAGAATGGTTAAGACCATTGCTTGAGGCCTATGCTTCGAGGGGATACGTAGCAATTGCCATTGATTCCCGCTACCATGGCGAACGTGCCAGAAATATCTCCACGTACCAAGATGCTCTCGTATCAGCATGGGAAAGAGGTGATACAATGCCATTCTTATTTGATACGGTCTGGGACTTGATAAAATTGGCAGATTATTTAACACACAGGGAGGATATAGACCCTACTAGGGTAGGAATCACCGGTGAATCACTTGGAGGGATGCATGCATGGTTTGCTGCTGCTGCTGACACCCGTTATGCAGTCGTGGTTCCTATAATTGGCGTTCAGGGATTTCGATGGGCCATAGACAATGATAAGTGGCAGGCACGAGTTGACAGTATAAAACCTGTTTTTGAGGGTAAGAGAAGTAGAAGATTGAAGGGTAAAGTACAAAAAATTATCTTAACTATTGGTGTCACGATACTTTCATACCTCATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AXE1 Abhydrolase_6 Peptidase_S9

Protein Analysis

371

Amino Acids

41.4

Weight (kDa)

9.51

Isoelectric Point (pI)

59.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AXE1 PF05448 189 - 316 3.7e-06 Acetyl xylan esterase (AXE1)
Peptidase_S9 PF00326 264 - 318 6.3e-07 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25770 AT5G25770 AT5G25770
fragaria_vesca FvH4_2g35900
malus_domestica MD08G1116700.v1.1
prunus_persica Prupe.1G451100_v2.0.a1 Prupe.1G451100_v2.0.a1
pyrus_communis pycom08g09720
rosa_chinensis RchiOBHm_Chr6g0305921
rosa_laevigata RLG00000010846
rosa_multiflora Rmu_sc0001809.1_g000049
rosa_roxburghii Rroxscaffold_7G00162220
rosa_rugosa Rorug06G0345400
rosa_samantha Rh6AG456900 Rh6BG444400 Rh6CG470800 Rh6DG457500
rosa_wichuraiana Rw6G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 4 cut(s) 140, 221, 541, 697
AcuI CTGAAG 1 cut(s) 421
AcvI CACGTG 1 cut(s) 198
AfaI GTAC 5 cut(s) 210, 580, 616, 734, 1059
AfiI CCNNNNNNNGG 3 cut(s) 588, 856, 947
AflIII ACRYGT 2 cut(s) 195, 197
AgeI ACCGGT 2 cut(s) 394, 869
AgsI TTSAA 2 cut(s) 484, 1048
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 4 cut(s) 93, 319, 435, 493
AluI AGCT 4 cut(s) 93, 319, 435, 493
Alw26I GTCTC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 288
Aor13HI TCCGGA 1 cut(s) 77
AoxI GGCC 4 cut(s) 105, 590, 654, 969
ApaI GGGCCC 1 cut(s) 109
ApeKI GCWGC 8 cut(s) 93, 122, 267, 348, 493, 905, 908, 911
AsiGI ACCGGT 2 cut(s) 394, 869
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 5 cut(s) 105, 106, 179, 246, 969
AsuHPI GGTGA 4 cut(s) 144, 779, 859, 884
AvaII GGWCC 2 cut(s) 179, 246
BaeGI GKGCMC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 109
BauI CACGAG 1 cut(s) 996
BbrPI CACGTG 1 cut(s) 198
BbvI GCAGC 8 cut(s) 80, 109, 279, 360, 480, 892, 895, 898
BccI CCATC 2 cut(s) 16, 960
BciT130I CCWGG 1 cut(s) 148
BciVI GTATCC 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 855
BfuI GTATCC 1 cut(s) 665
BisI GCNGC 8 cut(s) 94, 123, 268, 349, 494, 906, 909, 912
BlsI GCNGC 8 cut(s) 95, 124, 269, 350, 495, 907, 910, 913
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 179, 246
BmgT120I GGNCC 5 cut(s) 105, 106, 179, 246, 969
BmiI GGNNCC 3 cut(s) 107, 180, 939
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 4 cut(s) 105, 480, 730, 879
BpuEI CTTGAG 1 cut(s) 671
BsaAI YACGTR 3 cut(s) 198, 676, 732
BsaJI CCNNGG 1 cut(s) 703
BsaWI WCCGGW 3 cut(s) 77, 394, 869
Bsc4I CCNNNNNNNGG 3 cut(s) 588, 856, 947
Bse118I RCCGGY 3 cut(s) 385, 394, 869
Bse3DI GCAATG 2 cut(s) 453, 644
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 703
BseGI GGATG 2 cut(s) 471, 894
BseLI CCNNNNNNNGG 3 cut(s) 588, 856, 947
BseMI GCAATG 2 cut(s) 453, 644
BseMII CTCAG 3 cut(s) 295, 326, 513
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 8 cut(s) 80, 109, 279, 360, 480, 892, 895, 898
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 4 cut(s) 107, 592, 656, 971
BshTI ACCGGT 2 cut(s) 394, 869
BsiEI CGRYCG 1 cut(s) 359
BsiSI CCGG 5 cut(s) 78, 244, 386, 395, 870
BslFI GGGAC 3 cut(s) 175, 192, 815
BslI CCNNNNNNNGG 3 cut(s) 588, 856, 947
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 175, 192, 815
BsnI GGCC 4 cut(s) 107, 592, 656, 971
Bsp120I GGGCCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 109
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 272, 356
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 4 cut(s) 140, 221, 541, 697
BspANI GGCC 4 cut(s) 107, 592, 656, 971
BspCNI CTCAG 3 cut(s) 294, 325, 514
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 3 cut(s) 107, 180, 939
BsrDI GCAATG 2 cut(s) 453, 644
BsrFI RCCGGY 3 cut(s) 385, 394, 869
BssAI RCCGGY 3 cut(s) 385, 394, 869
BssECI CCNNGG 1 cut(s) 703
BssMI GATC 2 cut(s) 272, 356
BssSI CACGAG 1 cut(s) 996
BssT1I CCWWGG 1 cut(s) 703
Bst2BI CACGAG 1 cut(s) 996
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 4 cut(s) 231, 290, 796, 1007
BstAPI GCANNNNNTGC 1 cut(s) 902
BstBAI YACGTR 3 cut(s) 198, 676, 732
BstC8I GCNNGC 7 cut(s) 15, 387, 433, 469, 594, 894, 993
BstDEI CTNAG 3 cut(s) 281, 312, 522
BstDSI CCRYGG 1 cut(s) 703
BstEII GGTNACC 1 cut(s) 150
BstF5I GGATG 2 cut(s) 471, 894
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 2 cut(s) 275, 359
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 272, 356
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 5 cut(s) 428, 452, 705, 902, 911
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 896
BstPI GGTNACC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 109
BstSNI TACGTA 1 cut(s) 676
BstV1I GCAGC 8 cut(s) 80, 109, 279, 360, 480, 892, 895, 898
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 4 cut(s) 107, 592, 656, 971
BtgI CCRYGG 1 cut(s) 703
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 471, 894
BtsIMutI CAGTG 2 cut(s) 289, 445
Cac8I GCNNGC 7 cut(s) 15, 387, 433, 469, 594, 894, 993
CaiI CAGNNNCTG 1 cut(s) 288
CciI TCATGA 1 cut(s) 99
CfoI GCGC 1 cut(s) 348
Cfr10I RCCGGY 3 cut(s) 385, 394, 869
Cfr13I GGNCC 5 cut(s) 105, 106, 179, 246, 969
CseI GACGC 1 cut(s) 317
Csp6I GTAC 5 cut(s) 209, 579, 615, 733, 1058
CspAI ACCGGT 2 cut(s) 394, 869
CviAII CATG 6 cut(s) 100, 565, 704, 756, 893, 897
CviQI GTAC 5 cut(s) 209, 579, 615, 733, 1058
DdeI CTNAG 3 cut(s) 281, 312, 522
DpnI GATC 2 cut(s) 274, 358
DpnII GATC 2 cut(s) 272, 356
Eco105I TACGTA 1 cut(s) 676
Eco130I CCWWGG 1 cut(s) 703
Eco147I AGGCCT 2 cut(s) 592, 656
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 179, 246
Eco57I CTGAAG 1 cut(s) 421
Eco72I CACGTG 1 cut(s) 198
Eco91I GGTNACC 1 cut(s) 150
EcoO109I RGGNCCY 2 cut(s) 105, 179
EcoO65I GGTNACC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 2 cut(s) 894, 898
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 6 cut(s) 103, 568, 707, 759, 896, 900
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 3 cut(s) 175, 192, 815
FatI CATG 6 cut(s) 99, 564, 703, 755, 892, 896
FauI CCCGC 2 cut(s) 228, 704
Fnu4HI GCNGC 8 cut(s) 94, 123, 268, 349, 494, 906, 909, 912
FokI GGATG 2 cut(s) 458, 901
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 8 cut(s) 94, 123, 268, 349, 494, 906, 909, 912
FspBI CTAG 1 cut(s) 855
FspI TGCGCA 1 cut(s) 347
GlaI GCGC 1 cut(s) 347
GluI GCNGC 8 cut(s) 94, 123, 268, 349, 494, 906, 909, 912
HaeIII GGCC 4 cut(s) 107, 592, 656, 971
HapII CCGG 5 cut(s) 78, 244, 386, 395, 870
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 348
Hin1II CATG 6 cut(s) 103, 568, 707, 759, 896, 900
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 2 cut(s) 131, 1003
HindII GTYRAC 2 cut(s) 131, 1003
HindIII AAGCTT 2 cut(s) 317, 433
HinfI GANTC 4 cut(s) 403, 692, 864, 875
HpaII CCGG 5 cut(s) 78, 244, 386, 395, 870
HphI GGTGA 4 cut(s) 144, 779, 859, 884
Hpy166II GTNNAC 2 cut(s) 131, 1003
Hpy188I TCNGA 3 cut(s) 315, 328, 462
Hpy188III TCNNGA 4 cut(s) 78, 100, 416, 1087
Hpy8I GTNNAC 2 cut(s) 131, 1003
HpyAV CCTTC 3 cut(s) 192, 562, 1042
HpyCH4III ACNGT 4 cut(s) 231, 290, 796, 1007
HpyCH4IV ACGT 4 cut(s) 197, 675, 712, 731
HpyCH4V TGCA 7 cut(s) 41, 96, 496, 610, 892, 896, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 428, 452, 705, 902, 911
HpyF3I CTNAG 3 cut(s) 281, 312, 522
HpySE526I ACGT 4 cut(s) 197, 675, 712, 731
Hsp92II CATG 6 cut(s) 103, 568, 707, 759, 896, 900
HspAI GCGC 1 cut(s) 346
Kpn2I TCCGGA 1 cut(s) 77
KroI GCCGGC 1 cut(s) 385
KroNI GCCGGC 1 cut(s) 387
Kzo9I GATC 2 cut(s) 272, 356
Lsp1109I GCAGC 8 cut(s) 80, 109, 279, 360, 480, 892, 895, 898
LweI GCATC 4 cut(s) 105, 480, 730, 879
MaeI CTAG 1 cut(s) 855
MaeII ACGT 4 cut(s) 197, 675, 712, 731
MaeIII GTNAC 4 cut(s) 150, 252, 284, 1084
MalI GATC 2 cut(s) 274, 358
MboI GATC 2 cut(s) 272, 356
MboII GAAGA 2 cut(s) 512, 1053
MfeI CAATTG 2 cut(s) 173, 681
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 9 cut(s) 44, 173, 516, 555, 574, 681, 812, 945, 1065
Mph1103I ATGCAT 2 cut(s) 894, 898
MroI TCCGGA 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 385
MseI TTAA 6 cut(s) 515, 554, 638, 827, 1073, 1111
MspI CCGG 5 cut(s) 78, 244, 386, 395, 870
MspR9I CCNGG 1 cut(s) 148
MunI CAATTG 2 cut(s) 173, 681
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 5 cut(s) 428, 452, 705, 902, 911
NaeI GCCGGC 1 cut(s) 387
NcoI CCATGG 1 cut(s) 703
NdeII GATC 2 cut(s) 272, 356
NgoMIV GCCGGC 1 cut(s) 385
NlaIII CATG 6 cut(s) 103, 568, 707, 759, 896, 900
NlaIV GGNNCC 3 cut(s) 107, 180, 939
NmuCI GTSAC 4 cut(s) 150, 252, 284, 1084
NsbI TGCGCA 1 cut(s) 347
NsiI ATGCAT 2 cut(s) 894, 898
NspI RCATGY 1 cut(s) 896
PaeI GCATGC 1 cut(s) 896
PagI TCATGA 1 cut(s) 99
PceI AGGCCT 2 cut(s) 592, 656
PdiI GCCGGC 1 cut(s) 387
PfeI GAWTC 4 cut(s) 403, 692, 864, 875
PflFI GACNNNGTC 1 cut(s) 250
PinAI ACCGGT 2 cut(s) 394, 869
PkrI GCNGC 8 cut(s) 95, 124, 269, 350, 495, 907, 910, 913
Ple19I CGATCG 1 cut(s) 359
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
Ppu21I YACGTR 3 cut(s) 198, 676, 732
PpuMI RGGWCCY 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 146
PspCI CACGTG 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 3 cut(s) 107, 180, 939
PspOMI GGGCCC 1 cut(s) 105
PspPI GGNCC 5 cut(s) 105, 106, 179, 246, 969
PspPPI RGGWCCY 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 288
PsyI GACNNNGTC 1 cut(s) 250
PvuI CGATCG 1 cut(s) 359
RsaI GTAC 5 cut(s) 210, 580, 616, 734, 1059
RsaNI GTAC 5 cut(s) 209, 579, 615, 733, 1058
SaqAI TTAA 6 cut(s) 515, 554, 638, 827, 1073, 1111
SatI GCNGC 8 cut(s) 94, 123, 268, 349, 494, 906, 909, 912
Sau3AI GATC 2 cut(s) 272, 356
Sau96I GGNCC 5 cut(s) 105, 106, 179, 246, 969
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 4 cut(s) 105, 480, 730, 879
SgrAI CRCCGGYG 1 cut(s) 869
SinI GGWCC 2 cut(s) 179, 246
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
SnaBI TACGTA 1 cut(s) 676
SphI GCATGC 1 cut(s) 896
Sse9I AATT 9 cut(s) 44, 173, 516, 555, 574, 681, 812, 945, 1065
SseBI AGGCCT 2 cut(s) 592, 656
SsiI CCGC 4 cut(s) 140, 221, 541, 697
SspI AATATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 855
StuI AGGCCT 2 cut(s) 592, 656
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 4 cut(s) 231, 290, 796, 1007
TaiI ACGT 4 cut(s) 200, 678, 715, 734
TaqI TCGA 2 cut(s) 665, 964
TasI AATT 9 cut(s) 44, 173, 516, 555, 574, 681, 812, 945, 1065
TatI WGTACW 2 cut(s) 614, 1057
TfiI GAWTC 4 cut(s) 403, 692, 864, 875
Tru1I TTAA 6 cut(s) 515, 554, 638, 827, 1073, 1111
Tru9I TTAA 6 cut(s) 515, 554, 638, 827, 1073, 1111
TscAI CASTG 2 cut(s) 289, 445
TseFI GTSAC 4 cut(s) 150, 252, 284, 1084
TseI GCWGC 8 cut(s) 93, 122, 267, 348, 493, 905, 908, 911
Tsp45I GTSAC 4 cut(s) 150, 252, 284, 1084
TspDTI ATGAA 5 cut(s) 17, 19, 464, 581, 1086
TspGWI ACGGA 2 cut(s) 177, 396
TspRI CASTG 2 cut(s) 289, 445
Tth111I GACNNNGTC 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 179, 246
XceI RCATGY 1 cut(s) 896
XspI CTAG 1 cut(s) 855
Zsp2I ATGCAT 2 cut(s) 894, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.