pycom08g10120
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0009403
Physical Location & Seq
Forward (+)
8436170 .. 8438801
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGACAGCAGAACCAAAGGAGGACTTGCCACCAGGATTCAGATTTCATCCTTCAGATGAAGAGCTTATCACCTTCTATCTCATGAACAAGATAAATGATGCCACTTTTACTGGAAGGGCGATTGCCGATGTTGATCTCAACAAATGCGAACCCTGGGAACTTCCTGCAAAAGCGAAAATGGGAGAAAAGGAGTGGTACTTCTTCAGCCTACGAGATCGGAAGTACCCCACAGGAGTGAGAACAAACCGAGCAACAAGTACAGGTTACTGGAAGACCACAGGGAAAAACAAGGAGATCTTCAACAGTATCACATCTGAGCTGTTTGGGATGAAAAAGACCCTTGTTTTCTACAGAGGCCGAGCTCCTCGTGGTGAAAAATCCAACTGGGTCATGCACGAATATCGCATTCATTCTAAATCTGGCTTTAGAACATCAAAGGATGAATGGGTGGTTTGCCGAGTCTTCCAAAAGAGCGCAGGCATAAAAAAGTACCCAACAAACCAATCAAGAGCGGCCAATCCCTACAACCTAGAAATAGGACCAAGTATGGTACCATCACCCCTAATGCAGCTAGGTGATCCAAACCACCATCAGTTCCCCTATGGCAGAAACTACATGACAAGTGCTGAGATGGCCGAGCTTTCAAGAGTCTTCAGAGGTGGTGGTGGTGGCGGTGGTGGATCATCAAGTAGCACTATCAACCTACCAATCCAACCCCAATTCAATTACCCAATTGATGGAGGAGGTGGTGGTGGTGGTGTTGGAGGAGGAGCAGGTGGGTTTACAATATCTGGGTTGAACTTGAATCTTGGTGGGCCAGCATCACAGCCTACGTTGAGGACAATGCCACCAGCACAGATGCATCATCATGGCCCTCCATCTATGAATCATCATCATCAAGTGCAAGATGTTACTATGATGAACGGTCCAGATCATCAAGCTGGATACGGAACAATAGACATGAATAACAGCAACAACGCAACCGGTGGGAGTGGAAGCAGGTTTATGAACATGGATCCTTGTGCTGATCTTGAGAACTACTGGCCTTCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

352

Amino Acids

38.7

Weight (kDa)

8.95

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 136 1.4e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 764
Acc36I ACCTGC 2 cut(s) 764, 990
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 550
AccB7I CCANNNNNTGG 1 cut(s) 737
AccBSI CCGCTC 1 cut(s) 512
AciI CCGC 2 cut(s) 512, 672
AclWI GGATC 4 cut(s) 572, 688, 1010, 1023
AcoI YGGCCR 2 cut(s) 513, 633
AcuI CTGAAG 3 cut(s) 36, 187, 637
AfaI GTAC 5 cut(s) 197, 224, 259, 491, 552
AfiI CCNNNNNNNGG 1 cut(s) 737
AgeI ACCGGT 1 cut(s) 983
AgsI TTSAA 5 cut(s) 301, 645, 724, 799, 805
AjnI CCWGG 2 cut(s) 31, 152
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 6 cut(s) 64, 319, 362, 571, 640, 941
AluI AGCT 6 cut(s) 64, 319, 362, 571, 640, 941
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 4 cut(s) 572, 688, 1010, 1023
AoxI GGCC 6 cut(s) 355, 513, 633, 815, 871, 1043
ApeKI GCWGC 1 cut(s) 568
AsiGI ACCGGT 1 cut(s) 983
Asp718I GGTACC 1 cut(s) 550
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 4 cut(s) 539, 815, 872, 926
AsuHPI GGTGA 4 cut(s) 61, 383, 549, 587
AvaII GGWCC 2 cut(s) 539, 926
BamHI GGATCC 1 cut(s) 1015
BanI GGYRCC 1 cut(s) 550
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 3 cut(s) 278, 454, 643
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 580
BccI CCATC 5 cut(s) 562, 597, 625, 731, 886
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 2 cut(s) 33, 154
BciVI GTATCC 1 cut(s) 938
BfaI CTAG 2 cut(s) 530, 572
BfmI CTRYAG 1 cut(s) 349
BfuAI ACCTGC 2 cut(s) 764, 990
BfuI GTATCC 1 cut(s) 938
BglII AGATCT 1 cut(s) 294
BisI GCNGC 2 cut(s) 513, 569
BlsI GCNGC 2 cut(s) 514, 570
Bme1390I CCNGG 2 cut(s) 33, 154
Bme18I GGWCC 2 cut(s) 539, 926
BmgT120I GGNCC 4 cut(s) 539, 815, 872, 926
BmiI GGNNCC 2 cut(s) 552, 1017
BmrFI CCNGG 2 cut(s) 33, 154
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 4 cut(s) 88, 830, 849, 871
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 3 cut(s) 278, 454, 643
BpuEI CTTGAG 1 cut(s) 1052
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 152, 153
BsaWI WCCGGW 1 cut(s) 983
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 4 cut(s) 115, 272, 389, 1046
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 2 cut(s) 33, 154
BseDI CCNNGG 2 cut(s) 152, 153
BseGI GGATG 3 cut(s) 46, 333, 445
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMII CTCAG 2 cut(s) 306, 618
BseNI ACTGG 4 cut(s) 115, 272, 389, 1046
BseRI GAGGAG 4 cut(s) 354, 756, 780, 783
BseXI GCAGC 1 cut(s) 580
BshFI GGCC 6 cut(s) 357, 515, 635, 817, 873, 1045
BshNI GGYRCC 1 cut(s) 550
BshTI ACCGGT 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 984
BslI CCNNNNNNNGG 1 cut(s) 737
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 6 cut(s) 357, 515, 635, 817, 873, 1045
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
BspACI CCGC 2 cut(s) 512, 672
BspANI GGCC 6 cut(s) 357, 515, 635, 817, 873, 1045
BspCNI CTCAG 2 cut(s) 307, 619
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 552, 1017
BspMI ACCTGC 2 cut(s) 764, 990
BspPI GGATC 4 cut(s) 572, 688, 1010, 1023
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 983
BsrI ACTGG 4 cut(s) 115, 272, 389, 1046
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 2 cut(s) 152, 153
BssMI GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 33, 154
Bst4CI ACNGT 2 cut(s) 305, 926
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 478, 819
BstDEI CTNAG 2 cut(s) 315, 627
BstF5I GGATG 3 cut(s) 46, 333, 445
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 8 cut(s) 136, 217, 297, 580, 683, 934, 1018, 1030
BstMBI GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 2 cut(s) 33, 154
BstSCI CCNGG 2 cut(s) 31, 152
BstSFI CTRYAG 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 3 cut(s) 278, 454, 643
BstX2I RGATCY 2 cut(s) 294, 1015
BstYI RGATCY 2 cut(s) 294, 1015
BsuI GTATCC 1 cut(s) 938
BsuRI GGCC 6 cut(s) 357, 515, 635, 817, 873, 1045
BtsCI GGATG 3 cut(s) 46, 333, 445
BveI ACCTGC 2 cut(s) 764, 990
Cac8I GCNNGC 2 cut(s) 478, 819
CciI TCATGA 1 cut(s) 81
CfoI GCGC 1 cut(s) 476
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 4 cut(s) 539, 815, 872, 926
Csp6I GTAC 5 cut(s) 196, 223, 258, 490, 551
CspAI ACCGGT 1 cut(s) 983
CviAII CATG 6 cut(s) 82, 391, 616, 869, 961, 1012
CviQI GTAC 5 cut(s) 196, 223, 258, 490, 551
DdeI CTNAG 2 cut(s) 315, 627
DpnI GATC 8 cut(s) 135, 216, 296, 579, 682, 933, 1017, 1029
DpnII GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
EaeI YGGCCR 2 cut(s) 513, 633
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 539, 926
Eco53kI GAGCTC 1 cut(s) 362
Eco57I CTGAAG 3 cut(s) 36, 187, 637
EcoICRI GAGCTC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 31, 152
EcoT22I ATGCAT 1 cut(s) 864
EcoT38I GRGCYC 1 cut(s) 364
FaeI CATG 6 cut(s) 85, 394, 619, 872, 964, 1015
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 281, 313
FatI CATG 6 cut(s) 81, 390, 615, 868, 960, 1011
Fnu4HI GCNGC 2 cut(s) 513, 569
FokI GGATG 3 cut(s) 33, 340, 452
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 513, 569
FspBI CTAG 2 cut(s) 530, 572
GlaI GCGC 1 cut(s) 475
GluI GCNGC 2 cut(s) 513, 569
HaeIII GGCC 6 cut(s) 357, 515, 635, 817, 873, 1045
HapII CCGG 1 cut(s) 984
HhaI GCGC 1 cut(s) 476
Hin1II CATG 6 cut(s) 85, 394, 619, 872, 964, 1015
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 5 cut(s) 36, 459, 648, 805, 886
HpaII CCGG 1 cut(s) 984
HphI GGTGA 4 cut(s) 61, 383, 549, 587
Hpy166II GTNNAC 1 cut(s) 783
Hpy188I TCNGA 5 cut(s) 41, 55, 219, 316, 656
Hpy188III TCNNGA 5 cut(s) 82, 507, 645, 929, 1031
Hpy8I GTNNAC 1 cut(s) 783
HpyAV CCTTC 4 cut(s) 60, 82, 108, 1056
HpyCH4III ACNGT 2 cut(s) 305, 926
HpyCH4IV ACGT 1 cut(s) 833
HpyCH4V TGCA 5 cut(s) 167, 394, 568, 862, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 2 cut(s) 315, 627
HpySE526I ACGT 1 cut(s) 833
Hsp92II CATG 6 cut(s) 85, 394, 619, 872, 964, 1015
HspAI GCGC 1 cut(s) 474
KpnI GGTACC 1 cut(s) 554
Kzo9I GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 367, 770
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 4 cut(s) 88, 830, 849, 871
MaeI CTAG 2 cut(s) 530, 572
MaeII ACGT 1 cut(s) 833
MaeIII GTNAC 2 cut(s) 263, 910
MalI GATC 8 cut(s) 135, 216, 296, 579, 682, 933, 1017, 1029
MbiI CCGCTC 1 cut(s) 512
MboI GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
MboII GAAGA 6 cut(s) 71, 193, 283, 289, 454, 643
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 2 cut(s) 294, 1015
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 3 cut(s) 719, 724, 732
MlyI GAGTC 2 cut(s) 468, 657
MmeI TCCRAC 3 cut(s) 405, 736, 742
Mph1103I ATGCAT 1 cut(s) 864
MslI CAYNNNNRTG 2 cut(s) 233, 867
MspI CCGG 1 cut(s) 984
MspR9I CCNGG 2 cut(s) 33, 154
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 2 cut(s) 33, 154
MwoI GCNNNNNNNGC 1 cut(s) 632
NdeII GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
NlaIII CATG 6 cut(s) 85, 394, 619, 872, 964, 1015
NlaIV GGNNCC 2 cut(s) 552, 1017
NmeAIII GCCGAG 3 cut(s) 383, 482, 661
NsiI ATGCAT 1 cut(s) 864
OliI CACNNNNGTG 1 cut(s) 233
PagI TCATGA 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 764
PasI CCCWGGG 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 3 cut(s) 36, 805, 886
PflMI CCANNNNNTGG 1 cut(s) 737
PinAI ACCGGT 1 cut(s) 983
PkrI GCNGC 2 cut(s) 514, 570
PleI GAGTC 2 cut(s) 467, 656
PpsI GAGTC 2 cut(s) 467, 656
Psp124BI GAGCTC 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 31, 152
PspGI CCWGG 2 cut(s) 31, 152
PspN4I GGNNCC 2 cut(s) 552, 1017
PspPI GGNCC 4 cut(s) 539, 815, 872, 926
PsuI RGATCY 2 cut(s) 294, 1015
RsaI GTAC 5 cut(s) 197, 224, 259, 491, 552
RsaNI GTAC 5 cut(s) 196, 223, 258, 490, 551
RseI CAYNNNNRTG 2 cut(s) 233, 867
SacI GAGCTC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 54
SatI GCNGC 2 cut(s) 513, 569
Sau3AI GATC 8 cut(s) 133, 214, 294, 577, 680, 931, 1015, 1027
Sau96I GGNCC 4 cut(s) 539, 815, 872, 926
SchI GAGTC 2 cut(s) 468, 657
ScrFI CCNGG 2 cut(s) 33, 154
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 4 cut(s) 88, 830, 849, 871
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 2 cut(s) 539, 926
SmiMI CAYNNNNRTG 2 cut(s) 233, 867
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 3 cut(s) 719, 724, 732
SsiI CCGC 2 cut(s) 512, 672
SspMI CTAG 2 cut(s) 530, 572
SstI GAGCTC 1 cut(s) 364
StyD4I CCNGG 2 cut(s) 31, 152
TaaI ACNGT 2 cut(s) 305, 926
TaiI ACGT 1 cut(s) 836
TasI AATT 3 cut(s) 719, 724, 732
TatI WGTACW 1 cut(s) 257
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 3 cut(s) 36, 805, 886
TseI GCWGC 1 cut(s) 568
TspGWI ACGGA 1 cut(s) 963
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 539, 926
XspI CTAG 2 cut(s) 530, 572
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.