pycom08g10490

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0014674
Physical Location & Seq
Reverse (-)
8743464 .. 8747502
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1212 bp
ATGCAGCAAGCCCTTCTTCATCATCAGCAACAACAAATGTACCATCCTGGTGTGCTCGCTGCTGCCATGTCTCAGATGGAGCCTATCCCTAGTGGAAATCTGCCTCCCGGATTTGACCCGTCTCAGTGCAACAGTGTCTATGTTGGAAACATTCATGTAAATGTCACCGATAAGCTTCTTGCTGAAGTCTTCCAGAGTGTTGGTCCTCTTGCAGGATGCAAGCTCATCAGAAAGGATAAGTCGTCGTATGGATTTATTGACTACCATGACCGACATTCTGCAGCCCTTGCAATAATGAATCTGCATGGACGCCAACTTTATGGTCAGGCCCTTAAGGTGAATTGGGCATATGCCAATAGCCAGAGGGGAGATACTTCAGGGCACTTCAATATATTTGTCGGTGATCTTAGTCCAGAGGTTACAGATGCAACTTTATTTGCTTGCTTCAGGGTCTATCCTAGTTGTTCTGATGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCAAAGGGATATGGCTTTGTTTCTTTCCGTGAACAGCAGGATGCTCAGAGTGCTATAAATGATTTAACAGGTAAATGGCTTGGAAATAGGCAAATAAGATGCAACTGGGCAACCAAAAATGCTGGTTCTAGTGAAGAGAAGCAGAGTAGTGACAATCAAAATGCTGTTATGCTTACAAATGGATCTTCAGATGGAGGTCAAGAGAACTCCAATGAAGAGGCCCCTGAAAACAATCAAGCATACACAACTGTCTATGTTGGCAACCTCTCCCATGAGGTTACTCAAGCTGAACTTCATAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTACGTGTGCAGAGGGATAAAGGTTTTGGATTTGTGAGATACAACACTCATGATGAAGCAGCGTTGGCTATTCAAATTGGAAATGGCAGGATAGTTCATGGAAAGTCCATGAAGTGCTCGTGGGGTAGCAAACCAACTCCTGCCGGGATAGCTTCTAATCCACTACCTCCTCCTGTCCAGCCCTATCAGATTCTTCCTACTGCTGGTATTAACCAAGGATATTCTCCAGCTGATTTGATGCCTTATCGGCGTCAACTTGCCTTGAATCAGGCTGCTGCCACGTCCTTGGCATTGAACTCTGGCGGATCCCAACCTATGTACGATGCCTATCCTAACAGTTCATCCGGTCACCAGCTGATGTATTATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

404

Amino Acids

44.08

Weight (kDa)

6.73

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 46 - 112 1.2e-11 RNA recognition motif
RRM_1 PF00076 131 - 201 1.1e-17 RNA recognition motif
RRM_1 PF00076 252 - 317 9.7e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 504
AciI CCGC 2 cut(s) 502, 1143
AclWI GGATC 4 cut(s) 495, 694, 1140, 1153
AcoI YGGCCR 1 cut(s) 499
AcuI CTGAAG 4 cut(s) 204, 360, 430, 675
AcyI GRCGYC 2 cut(s) 310, 1090
AfaI GTAC 3 cut(s) 41, 843, 1160
AfiI CCNNNNNNNGG 3 cut(s) 212, 508, 1043
AflII CTTAAG 1 cut(s) 332
AflIII ACRYGT 1 cut(s) 844
AgsI TTSAA 4 cut(s) 388, 914, 1105, 1135
AjiI CACGTC 1 cut(s) 1122
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 6 cut(s) 175, 223, 791, 992, 1070, 1195
AluI AGCT 6 cut(s) 175, 223, 791, 992, 1070, 1195
Alw21I GWGCWC 2 cut(s) 57, 959
Alw26I GTCTC 2 cut(s) 75, 126
AlwI GGATC 4 cut(s) 495, 694, 1140, 1153
AoxI GGCC 3 cut(s) 327, 499, 723
ApeKI GCWGC 7 cut(s) 4, 59, 62, 281, 899, 1112, 1115
AspS9I GGNCC 3 cut(s) 203, 328, 724
AsuC2I CCSGG 2 cut(s) 108, 985
AsuHPI GGTGA 4 cut(s) 157, 349, 413, 1181
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 384
BaeI ACNNNNGTAYC 2 cut(s) 23, 56
BamHI GGATCC 1 cut(s) 1145
BauI CACGAG 1 cut(s) 958
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 57, 959
BbvI GCAGC 7 cut(s) 16, 46, 49, 293, 911, 1099, 1102
BccI CCATC 3 cut(s) 51, 70, 689
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 2 cut(s) 108, 985
BcoDI GTCTC 2 cut(s) 75, 126
BfaI CTAG 3 cut(s) 90, 459, 633
BfmI CTRYAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 332
BglI GCCNNNNNGGC 1 cut(s) 1087
BisI GCNGC 8 cut(s) 5, 60, 63, 282, 502, 900, 1113, 1116
BlsI GCNGC 8 cut(s) 6, 61, 64, 283, 503, 901, 1114, 1117
Bme1390I CCNGG 3 cut(s) 48, 108, 985
Bme18I GGWCC 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 1122
BmgT120I GGNCC 3 cut(s) 203, 328, 724
BmiI GGNNCC 3 cut(s) 81, 726, 1147
BmrFI CCNGG 3 cut(s) 48, 108, 985
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 7 cut(s) 206, 415, 460, 535, 593, 1068, 1153
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 1050
BpuEI CTTGAG 1 cut(s) 771
BpuMI CCSGG 2 cut(s) 108, 985
BsaAI YACGTR 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 1167
BsaHI GRCGYC 2 cut(s) 310, 1090
BsaJI CCNNGG 2 cut(s) 1054, 1125
BsaWI WCCGGW 1 cut(s) 1184
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 508, 1043
Bse1I ACTGG 2 cut(s) 502, 614
Bse8I GATNNNNATC 1 cut(s) 1167
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 1054, 1125
BseGI GGATG 4 cut(s) 43, 221, 550, 1181
BseJI GATNNNNATC 1 cut(s) 1167
BseLI CCNNNNNNNGG 3 cut(s) 212, 508, 1043
BseMII CTCAG 3 cut(s) 86, 137, 563
BseNI ACTGG 2 cut(s) 502, 614
BseRI GAGGAG 1 cut(s) 999
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 7 cut(s) 16, 46, 49, 293, 911, 1099, 1102
BseYI CCCAGC 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 869
BshFI GGCC 3 cut(s) 329, 501, 725
BsiHKAI GWGCWC 2 cut(s) 57, 959
BsiSI CCGG 3 cut(s) 108, 984, 1185
BslI CCNNNNNNNGG 3 cut(s) 212, 508, 1043
BsmAI GTCTC 2 cut(s) 75, 126
BsmBI CGTCTC 1 cut(s) 126
BsnI GGCC 3 cut(s) 329, 501, 725
Bsp1286I GDGCHC 3 cut(s) 57, 384, 959
Bsp143I GATC 4 cut(s) 403, 487, 686, 1145
BspACI CCGC 2 cut(s) 502, 1143
BspANI GGCC 3 cut(s) 329, 501, 725
BspCNI CTCAG 3 cut(s) 85, 136, 562
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 3 cut(s) 81, 726, 1147
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 4 cut(s) 495, 694, 1140, 1153
BspTI CTTAAG 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 504
BsrI ACTGG 2 cut(s) 502, 614
BssECI CCNNGG 2 cut(s) 1054, 1125
BssMI GATC 4 cut(s) 403, 487, 686, 1145
BssNI GRCGYC 2 cut(s) 310, 1090
BssSI CACGAG 1 cut(s) 958
BssT1I CCWWGG 2 cut(s) 1054, 1125
Bst2BI CACGAG 1 cut(s) 958
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 134, 754, 1178
Bst6I CTCTTC 2 cut(s) 633, 714
BstACI GRCGYC 2 cut(s) 310, 1090
BstAFI CTTAAG 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 4 cut(s) 9, 57, 221, 442
BstDEI CTNAG 4 cut(s) 72, 123, 407, 549
BstEII GGTNACC 1 cut(s) 1187
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 4 cut(s) 43, 221, 550, 1181
BstKTI GATC 4 cut(s) 406, 490, 689, 1148
BstMAI GTCTC 2 cut(s) 75, 126
BstMBI GATC 4 cut(s) 403, 487, 686, 1145
BstMWI GCNNNNNNNGC 6 cut(s) 287, 554, 821, 905, 989, 1087
BstNI CCWGG 1 cut(s) 48
BstPI GGTNACC 1 cut(s) 1187
BstSCI CCNGG 3 cut(s) 46, 106, 983
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 384
BstV1I GCAGC 7 cut(s) 16, 46, 49, 293, 911, 1099, 1102
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 2 cut(s) 686, 1145
BstXI CCANNNNNNTGG 3 cut(s) 200, 320, 1126
BstYI RGATCY 2 cut(s) 686, 1145
BsuRI GGCC 3 cut(s) 329, 501, 725
BtrI CACGTC 1 cut(s) 1122
BtsCI GGATG 4 cut(s) 43, 221, 550, 1181
BtsIMutI CAGTG 2 cut(s) 131, 139
Cac8I GCNNGC 4 cut(s) 9, 57, 221, 442
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 3 cut(s) 203, 328, 724
CseI GACGC 2 cut(s) 318, 1079
Csp6I GTAC 3 cut(s) 40, 842, 1159
CviQI GTAC 3 cut(s) 40, 842, 1159
DdeI CTNAG 4 cut(s) 72, 123, 407, 549
DpnI GATC 4 cut(s) 405, 489, 688, 1147
DpnII GATC 4 cut(s) 403, 487, 686, 1145
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 633, 714
EarI CTCTTC 2 cut(s) 633, 714
EciI GGCGGA 1 cut(s) 1158
Eco130I CCWWGG 2 cut(s) 1054, 1125
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 4 cut(s) 204, 360, 430, 675
Eco91I GGTNACC 1 cut(s) 1187
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoO109I RGGNCCY 2 cut(s) 328, 724
EcoO65I GGTNACC 1 cut(s) 1187
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 1054, 1125
ErhI CCWWGG 2 cut(s) 1054, 1125
Esp3I CGTCTC 1 cut(s) 126
FalI AAGNNNNNCTT 3 cut(s) 32, 780, 812
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 8 cut(s) 5, 60, 63, 282, 502, 900, 1113, 1116
FokI GGATG 4 cut(s) 30, 228, 557, 1168
Fsp4HI GCNGC 8 cut(s) 5, 60, 63, 282, 502, 900, 1113, 1116
FspBI CTAG 3 cut(s) 90, 459, 633
GluI GCNGC 8 cut(s) 5, 60, 63, 282, 502, 900, 1113, 1116
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 3 cut(s) 329, 501, 725
HapII CCGG 3 cut(s) 108, 984, 1185
HgaI GACGC 2 cut(s) 318, 1079
Hin1I GRCGYC 2 cut(s) 310, 1090
HincII GTYRAC 1 cut(s) 1094
HindII GTYRAC 1 cut(s) 1094
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 298, 1030, 1105
HpaII CCGG 3 cut(s) 108, 984, 1185
HphI GGTGA 4 cut(s) 157, 349, 413, 1181
Hpy166II GTNNAC 2 cut(s) 536, 1094
Hpy188I TCNGA 6 cut(s) 75, 230, 469, 552, 694, 1029
Hpy188III TCNNGA 4 cut(s) 193, 413, 704, 890
Hpy8I GTNNAC 2 cut(s) 536, 1094
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 134, 754, 1178
HpyCH4IV ACGT 2 cut(s) 844, 1121
HpyF10VI GCNNNNNNNGC 6 cut(s) 287, 554, 821, 905, 989, 1087
HpyF3I CTNAG 4 cut(s) 72, 123, 407, 549
HpySE526I ACGT 2 cut(s) 844, 1121
Hsp92I GRCGYC 2 cut(s) 310, 1090
Kzo9I GATC 4 cut(s) 403, 487, 686, 1145
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 7 cut(s) 16, 46, 49, 293, 911, 1099, 1102
LweI GCATC 7 cut(s) 206, 415, 460, 535, 593, 1068, 1153
MaeI CTAG 3 cut(s) 90, 459, 633
MaeII ACGT 2 cut(s) 844, 1121
MaeIII GTNAC 5 cut(s) 163, 418, 653, 781, 1187
MalI GATC 4 cut(s) 405, 489, 688, 1147
MbiI CCGCTC 1 cut(s) 504
MboI GATC 4 cut(s) 403, 487, 686, 1145
MboII GAAGA 6 cut(s) 8, 181, 650, 681, 731, 1025
MflI RGATCY 2 cut(s) 686, 1145
MhlI GDGCHC 3 cut(s) 57, 384, 959
MluCI AATT 2 cut(s) 340, 915
MmeI TCCRAC 1 cut(s) 124
MseI TTAA 4 cut(s) 333, 569, 1050, 1210
MslI CAYNNNNRTG 2 cut(s) 48, 159
MspA1I CMGCKG 2 cut(s) 1070, 1195
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 3 cut(s) 108, 984, 1185
MspR9I CCNGG 3 cut(s) 48, 108, 985
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 6 cut(s) 287, 554, 821, 905, 989, 1087
NciI CCSGG 2 cut(s) 108, 985
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 403, 487, 686, 1145
NlaIV GGNNCC 3 cut(s) 81, 726, 1147
NmuCI GTSAC 3 cut(s) 163, 653, 1187
PagI TCATGA 1 cut(s) 889
PfeI GAWTC 3 cut(s) 298, 1030, 1105
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 8 cut(s) 6, 61, 64, 283, 503, 901, 1114, 1117
Ppu21I YACGTR 1 cut(s) 845
Psp6I CCWGG 1 cut(s) 46
PspEI GGTNACC 1 cut(s) 1187
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 3 cut(s) 81, 726, 1147
PspPI GGNCC 3 cut(s) 203, 328, 724
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 2 cut(s) 686, 1145
PvuII CAGCTG 2 cut(s) 1070, 1195
RsaI GTAC 3 cut(s) 41, 843, 1160
RsaNI GTAC 3 cut(s) 40, 842, 1159
RseI CAYNNNNRTG 2 cut(s) 48, 159
SaqAI TTAA 4 cut(s) 333, 569, 1050, 1210
SatI GCNGC 8 cut(s) 5, 60, 63, 282, 502, 900, 1113, 1116
Sau3AI GATC 4 cut(s) 403, 487, 686, 1145
Sau96I GGNCC 3 cut(s) 203, 328, 724
ScrFI CCNGG 3 cut(s) 48, 108, 985
SduI GDGCHC 3 cut(s) 57, 384, 959
SfaNI GCATC 7 cut(s) 206, 415, 460, 535, 593, 1068, 1153
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 48, 159
SmlI CTYRAG 2 cut(s) 332, 786
SmoI CTYRAG 2 cut(s) 332, 786
Sse9I AATT 2 cut(s) 340, 915
SsiI CCGC 2 cut(s) 502, 1143
SspMI CTAG 3 cut(s) 90, 459, 633
StyD4I CCNGG 3 cut(s) 46, 106, 983
StyI CCWWGG 2 cut(s) 1054, 1125
TaaI ACNGT 3 cut(s) 134, 754, 1178
TaiI ACGT 2 cut(s) 847, 1124
TaqII GACCGA 1 cut(s) 285
TasI AATT 2 cut(s) 340, 915
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 3 cut(s) 298, 1030, 1105
Tru1I TTAA 4 cut(s) 333, 569, 1050, 1210
Tru9I TTAA 4 cut(s) 333, 569, 1050, 1210
TscAI CASTG 2 cut(s) 131, 139
TseFI GTSAC 3 cut(s) 163, 653, 1187
TseI GCWGC 7 cut(s) 4, 59, 62, 281, 899, 1112, 1115
Tsp45I GTSAC 3 cut(s) 163, 653, 1187
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 131, 139
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 3 cut(s) 90, 459, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.