pycom08g10560

serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0010800
Physical Location & Seq
Reverse (-)
8786274 .. 8788448
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGTCTCGTGTGTACGTCGGAAACTTGAGTCCTCGAGTGTCCGAGGGAGAGCTTGAAGACGAGTTTCGTGTTTTTGGAAATATTAGAAGCGTGTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGACTTCGATGACAGTAGAGATGCAGAGGATGCAATCCGTGAAATAGATGGTAAGAATAACTGGAGAGTTGAGCTTTCACACAACTCTAGAGGTGGTGGTGGTGGTGGTCGTGGTGGAGGTGGTCGTGGCCGCTCTGGCGGTTCTGATTTGAAGTGCTATGAGTGTGGTGAGCCTGGCCATTTTGCTCGTGAATGTCGTCTACGTGGTGGTGGTGGTGGTGGTGGAGGTGGTGGTGGAAGGCGTCGTAGCCGCACTCCCCCTCGCTATCGCAGAAGTCCTAGTTATGGTCGCAGCTACAGTCCTCGTGGGAGATCCCCTAGGCGTCGCAGTTTGACACCACGAGGGAATAGCCGCAGCAGGTCCCCACCATACCGTGGGCGGGAGGAGTTGCCATATGCCAATGGGATGATTTTCCATTTGATTCATGTCATGATGTTGCCATTGCTTATTTGTTCTCTGAAATATGGTGCTGAATACTTGCAGCAATGGTCTAAAGGATCGCCGCCGAAGCAGGAGTTAAGGAGTGCATGGATGGCTAGCCGGTGTTGTTTAAGAAGATATACTGGGATTAAGTGTTGTTTAGTGTGCTTGGACATCAGGACAACTATGTTTAAATTGGGGGACGCCCTCAGCCTCTACTGTCTCTCTGATTTGGTTAAGTTCCTTCCTTTCTTAACTCTAGCTCGTTTTATTTACCTTTGCAAAATAGGCGTAGGGATCGATCTTAAAGGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

289

Amino Acids

32.08

Weight (kDa)

10.01

Isoelectric Point (pI)

75.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 61 1.4e-15 RNA recognition motif
zf-CCHC PF00098 94 - 109 1.8e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 328
AciI CCGC 6 cut(s) 259, 267, 379, 481, 508, 632
AclWI GGATC 3 cut(s) 435, 634, 854
AcoI YGGCCR 2 cut(s) 256, 304
AcyI GRCGYC 3 cut(s) 370, 451, 753
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 413, 503, 508
AgsI TTSAA 2 cut(s) 56, 280
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 4 cut(s) 52, 202, 423, 812
AluI AGCT 4 cut(s) 52, 202, 423, 812
Alw26I GTCTC 3 cut(s) 9, 100, 776
AlwI GGATC 3 cut(s) 435, 634, 854
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 2 cut(s) 256, 304
ApeKI GCWGC 4 cut(s) 420, 483, 610, 861
AspA2I CCTAGG 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 308
AsuNHI GCTAGC 1 cut(s) 665
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 489
AvrII CCTAGG 1 cut(s) 446
BalI TGGCCA 1 cut(s) 306
BauI CACGAG 4 cut(s) 6, 315, 432, 468
BbsI GAAGAC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 758
BbvI GCAGC 4 cut(s) 432, 495, 622, 848
BccI CCATC 2 cut(s) 170, 655
BciT130I CCWGG 1 cut(s) 303
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 9, 100, 776
BfaI CTAG 5 cut(s) 216, 408, 447, 666, 809
BfmI CTRYAG 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 477
BglI GCCNNNNNGGC 1 cut(s) 264
BisI GCNGC 8 cut(s) 259, 379, 421, 481, 484, 611, 632, 862
BlnI CCTAGG 1 cut(s) 446
BlsI GCNGC 8 cut(s) 260, 380, 422, 482, 485, 612, 633, 863
Bme1390I CCNGG 2 cut(s) 114, 303
Bme18I GGWCC 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 114, 303
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 2 cut(s) 139, 148
BmtI GCTAGC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 758
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 849
BsaAI YACGTR 1 cut(s) 332
BsaHI GRCGYC 3 cut(s) 370, 451, 753
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 3 cut(s) 42, 446, 502
Bsc4I CCNNNNNNNGG 3 cut(s) 413, 503, 508
Bse118I RCCGGY 1 cut(s) 669
Bse1I ACTGG 2 cut(s) 194, 697
Bse3DI GCAATG 2 cut(s) 569, 620
BseBI CCWGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 849
BseDI CCNNGG 3 cut(s) 42, 446, 502
BseGI GGATG 3 cut(s) 163, 540, 666
BseLI CCNNNNNNNGG 3 cut(s) 413, 503, 508
BseMI GCAATG 2 cut(s) 569, 620
BseMII CTCAG 1 cut(s) 772
BseNI ACTGG 2 cut(s) 194, 697
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 4 cut(s) 432, 495, 622, 848
BshFI GGCC 2 cut(s) 258, 306
BshVI ATCGAT 1 cut(s) 849
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 113, 670
BslFI GGGAC 2 cut(s) 475, 764
BslI CCNNNNNNNGG 3 cut(s) 413, 503, 508
BsmAI GTCTC 3 cut(s) 9, 100, 776
BsmFI GGGAC 2 cut(s) 475, 764
BsnI GGCC 2 cut(s) 258, 306
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 33
Bsp143I GATC 4 cut(s) 440, 626, 846, 850
BspACI CCGC 6 cut(s) 259, 267, 379, 481, 508, 632
BspANI GGCC 2 cut(s) 258, 306
BspCNI CTCAG 1 cut(s) 771
BspDI ATCGAT 1 cut(s) 849
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 491
BspMI ACCTGC 1 cut(s) 477
BspOI GCTAGC 1 cut(s) 669
BspPI GGATC 3 cut(s) 435, 634, 854
BspTNI GGTCTC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 2 cut(s) 569, 620
BsrFI RCCGGY 1 cut(s) 669
BsrI ACTGG 2 cut(s) 194, 697
BssAI RCCGGY 1 cut(s) 669
BssECI CCNNGG 3 cut(s) 42, 446, 502
BssMI GATC 4 cut(s) 440, 626, 846, 850
BssNI GRCGYC 3 cut(s) 370, 451, 753
BssSI CACGAG 4 cut(s) 6, 315, 432, 468
BssT1I CCWWGG 1 cut(s) 446
Bst2BI CACGAG 4 cut(s) 6, 315, 432, 468
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 4 cut(s) 143, 428, 503, 770
BstACI GRCGYC 3 cut(s) 370, 451, 753
BstAPI GCANNNNNTGC 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 667
BstDEI CTNAG 1 cut(s) 758
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 3 cut(s) 163, 540, 666
BstKTI GATC 4 cut(s) 443, 629, 849, 853
BstMAI GTCTC 3 cut(s) 9, 100, 776
BstMBI GATC 4 cut(s) 440, 626, 846, 850
BstMWI GCNNNNNNNGC 5 cut(s) 158, 264, 637, 662, 837
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 112, 301
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 4 cut(s) 432, 495, 622, 848
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 849
BsuRI GGCC 2 cut(s) 258, 306
BsuTUI ATCGAT 1 cut(s) 849
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 3 cut(s) 163, 540, 666
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 667
CciI TCATGA 1 cut(s) 558
Cfr10I RCCGGY 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 849
CseI GACGC 3 cut(s) 359, 440, 761
Csp6I GTAC 1 cut(s) 13
CviAII CATG 3 cut(s) 554, 559, 657
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 758
DpnI GATC 4 cut(s) 442, 628, 848, 852
DpnII GATC 4 cut(s) 440, 626, 846, 850
DraI TTTAAA 1 cut(s) 742
EaeI YGGCCR 2 cut(s) 256, 304
Eco130I CCWWGG 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 3 cut(s) 557, 562, 660
FaqI GGGAC 2 cut(s) 475, 764
FatI CATG 3 cut(s) 553, 558, 656
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 1 cut(s) 328
Fnu4HI GCNGC 8 cut(s) 259, 379, 421, 481, 484, 611, 632, 862
FokI GGATG 3 cut(s) 170, 547, 673
Fsp4HI GCNGC 8 cut(s) 259, 379, 421, 481, 484, 611, 632, 862
FspBI CTAG 5 cut(s) 216, 408, 447, 666, 809
GluI GCNGC 8 cut(s) 259, 379, 421, 481, 484, 611, 632, 862
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 2 cut(s) 258, 306
HapII CCGG 2 cut(s) 113, 670
HgaI GACGC 3 cut(s) 359, 440, 761
Hin1I GRCGYC 3 cut(s) 370, 451, 753
Hin1II CATG 3 cut(s) 557, 562, 660
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 28, 550
HpaII CCGG 2 cut(s) 113, 670
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 3 cut(s) 13, 130, 329
Hpy188I TCNGA 6 cut(s) 20, 43, 105, 274, 588, 778
Hpy188III TCNNGA 4 cut(s) 216, 317, 559, 727
Hpy8I GTNNAC 3 cut(s) 13, 130, 329
Hpy99I CGWCG 3 cut(s) 20, 375, 456
HpyAV CCTTC 2 cut(s) 360, 803
HpyCH4III ACNGT 4 cut(s) 143, 428, 503, 770
HpyCH4IV ACGT 2 cut(s) 15, 331
HpyCH4V TGCA 5 cut(s) 152, 161, 610, 656, 831
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 264, 637, 662, 837
HpyF3I CTNAG 1 cut(s) 758
HpySE526I ACGT 2 cut(s) 15, 331
Hsp92I GRCGYC 3 cut(s) 370, 451, 753
Hsp92II CATG 3 cut(s) 557, 562, 660
Kzo9I GATC 4 cut(s) 440, 626, 846, 850
Lsp1109I GCAGC 4 cut(s) 432, 495, 622, 848
LweI GCATC 2 cut(s) 139, 148
MaeI CTAG 5 cut(s) 216, 408, 447, 666, 809
MaeII ACGT 2 cut(s) 15, 331
MalI GATC 4 cut(s) 442, 628, 848, 852
MbiI CCGCTC 1 cut(s) 261
MboI GATC 4 cut(s) 440, 626, 846, 850
MboII GAAGA 2 cut(s) 68, 696
MflI RGATCY 1 cut(s) 440
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 1 cut(s) 743
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 1 cut(s) 37
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
MseI TTAA 7 cut(s) 647, 680, 699, 741, 786, 803, 855
Msp20I TGGCCA 1 cut(s) 306
MspI CCGG 2 cut(s) 113, 670
MspR9I CCNGG 2 cut(s) 114, 303
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 158, 264, 637, 662, 837
NciI CCSGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 523
NdeII GATC 4 cut(s) 440, 626, 846, 850
NheI GCTAGC 1 cut(s) 665
NlaIII CATG 3 cut(s) 557, 562, 660
NlaIV GGNNCC 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 33
PagI TCATGA 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PfeI GAWTC 1 cut(s) 550
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 8 cut(s) 260, 380, 422, 482, 485, 612, 633, 863
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 332
PpuMI RGGWCCY 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 489
PspPPI RGGWCCY 1 cut(s) 489
PspXI VCTCGAGB 1 cut(s) 33
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 7 cut(s) 647, 680, 699, 741, 786, 803, 855
SatI GCNGC 8 cut(s) 259, 379, 421, 481, 484, 611, 632, 862
Sau3AI GATC 4 cut(s) 440, 626, 846, 850
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 114, 303
SfaNI GCATC 2 cut(s) 139, 148
SfcI CTRYAG 1 cut(s) 424
Sfr274I CTCGAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 25, 33
SmoI CTYRAG 2 cut(s) 25, 33
Sse9I AATT 1 cut(s) 743
SsiI CCGC 6 cut(s) 259, 267, 379, 481, 508, 632
SspI AATATT 1 cut(s) 82
SspMI CTAG 5 cut(s) 216, 408, 447, 666, 809
StyD4I CCNGG 2 cut(s) 112, 301
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 4 cut(s) 143, 428, 503, 770
TaiI ACGT 2 cut(s) 18, 334
TaqI TCGA 3 cut(s) 34, 135, 849
TasI AATT 1 cut(s) 743
TauI GCSGC 4 cut(s) 261, 381, 483, 634
TfiI GAWTC 1 cut(s) 550
Tru1I TTAA 7 cut(s) 647, 680, 699, 741, 786, 803, 855
Tru9I TTAA 7 cut(s) 647, 680, 699, 741, 786, 803, 855
TseI GCWGC 4 cut(s) 420, 483, 610, 861
TspDTI ATGAA 1 cut(s) 542
TspGWI ACGGA 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 489
XbaI TCTAGA 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 33
XmaJI CCTAGG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 328
XspI CTAG 5 cut(s) 216, 408, 447, 666, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.