pycom08g14000

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012491
Physical Location & Seq
Forward (+)
13032683 .. 13034808
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
ATGGCCGATTCCAAAGTGGAGACAATCTCCCGATTAGCCCAATGGAGGATCGAGAACTTCGGACCTTGCTCTTACAAAAAGTCCGACCCTTTCCGGCTCGGAATCTGGAATTGGCATTTTTCGATAGAGAAGAATCGGTACCTCTACATTCGTCTGTTTCCAGAGCCGTCGCGGGCGTCGAAAGAACAGCCTCCCCTTGCTCGCTTTGTTCTCAGAGTCTCTAGCTCCGGCCCCGGCCGCAGAACTGACAGAGGATCTTCACATGTCCCTTTTCATGAAAGACTGCTTCGTACAAGTGAAGACTTTGTCTGGCCTGTTGATTCCACCTTCCTTGGTCGCTTCATCATTGATGTTGAGTTTCTTGACTTGAAGATATGCCCTTTAAATGGCGGGGAAGCTAGTCCTGTATGGCCTGCTGATGGATTGATGCAATCCGTGTCAACCCAAAGCACTCTCCGGTGCCTCTCTCGCATGCTTTATGAGGGCATCCATGCTGATGTTACTATCAACACTGCTGATGGCAGTTTAAGAGCTCACAAAGCAATTCTTTCTGCAACTTCTCCCGTGTTCCAAAGCATGTTCAGTCACGACCTTAAGGAAAAAGAGTCCTCCATAATCCACATAGTAGACATGTCCCTGGAATCTTGCATGGCTCTTCTAAGTTACCTCTATGGAACCATTAAACAAGAAGATTTCTGGAAGCACCGGTTGGCACTTCTAGGTGCGGCAAACAAGTACGACATTGCAGACTTAAAAGATGCTTGTGAGGAAAGCCTTTTGGAAGATATTAACTCGACGAATGTCCTTGAGAGGCTGCAAGACGCCTGGTTGTACCAGCTGAATAAGCTTAAGAAAGGATGCTTGATGTACTTGTTTGATTTTGGAAAAATATATGACGTGAGAGAAGAAGTAAGTAACTTTTTCAGGCATGCAGACCGAGAATTGATGACGGAAATGTTTCAGGAGGTGCTTACTGTTTGGAAGCCTGTGTAG

Protein Analysis

331

Amino Acids

38.03

Weight (kDa)

6.17

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 160 - 261 4.6e-21 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012491)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21780 AT1G21780
fragaria_vesca FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica MD08G1162000.v1.1
prunus_persica Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis pycom08g14000
rosa_chinensis RchiOBHm_Chr6g0295921
rosa_laevigata RLG00000011756
rosa_multiflora Rmu_sc0003139.1_g000009
rosa_roxburghii Rroxscaffold_7G00172050
rosa_rugosa Rorug06G0255100
rosa_samantha Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana Rw6G032170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 2 cut(s) 138, 459
AccI GTMKAC 1 cut(s) 627
AccII CGCG 1 cut(s) 172
AciI CCGC 4 cut(s) 172, 238, 390, 725
AclWI GGATC 2 cut(s) 56, 262
AcoI YGGCCR 2 cut(s) 3, 235
AcyI GRCGYC 2 cut(s) 176, 822
AfaI GTAC 5 cut(s) 140, 292, 737, 833, 869
AfiI CCNNNNNNNGG 3 cut(s) 45, 386, 419
AflII CTTAAG 2 cut(s) 593, 848
AflIII ACRYGT 2 cut(s) 262, 630
AgeI ACCGGT 1 cut(s) 705
AgsI TTSAA 1 cut(s) 370
AjiI CACGTC 1 cut(s) 898
AjnI CCWGG 2 cut(s) 636, 824
AjuI GAANNNNNNNTTGG 4 cut(s) 94, 126, 692, 724
AluBI AGCT 5 cut(s) 225, 398, 533, 838, 847
AluI AGCT 5 cut(s) 225, 398, 533, 838, 847
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 14, 223
AlwI GGATC 2 cut(s) 56, 262
AoxI GGCC 5 cut(s) 3, 229, 235, 311, 410
ApeKI GCWGC 1 cut(s) 814
AsiGI ACCGGT 1 cut(s) 705
Asp700I GAANNNNTTC 1 cut(s) 957
Asp718I GGTACC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 62, 230
AsuC2I CCSGG 1 cut(s) 234
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 2 cut(s) 138, 459
BanII GRGCYC 1 cut(s) 535
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 801
BccI CCATC 2 cut(s) 413, 512
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 638, 826
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 14, 223
BfaI CTAG 3 cut(s) 222, 399, 719
BfrI CTTAAG 2 cut(s) 593, 848
BisI GCNGC 3 cut(s) 238, 726, 815
BlsI GCNGC 3 cut(s) 239, 727, 816
Bme1390I CCNGG 3 cut(s) 234, 638, 826
Bme18I GGWCC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 898
BmgT120I GGNCC 2 cut(s) 62, 230
BmiI GGNNCC 4 cut(s) 140, 232, 461, 676
BmrFI CCNGG 3 cut(s) 234, 638, 826
BmsI GCATC 4 cut(s) 417, 495, 748, 848
BoxI GACNNNNGTC 1 cut(s) 800
BpiI GAAGAC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpuEI CTTGAG 1 cut(s) 827
BpuMI CCSGG 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 176, 822
BsaJI CCNNGG 3 cut(s) 232, 331, 636
BsaWI WCCGGW 2 cut(s) 456, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 386, 419
Bse118I RCCGGY 1 cut(s) 705
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 2 cut(s) 638, 826
BseDI CCNNGG 3 cut(s) 232, 331, 636
BseGI GGATG 2 cut(s) 486, 863
BseLI CCNNNNNNNGG 3 cut(s) 45, 386, 419
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 1 cut(s) 226
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 801
Bsh1236I CGCG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 5 cut(s) 5, 231, 237, 313, 412
BshNI GGYRCC 2 cut(s) 138, 459
BshTI ACCGGT 1 cut(s) 705
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 5 cut(s) 94, 228, 234, 457, 706
BslFI GGGAC 2 cut(s) 251, 619
BslI CCNNNNNNNGG 3 cut(s) 45, 386, 419
BsmAI GTCTC 2 cut(s) 14, 223
BsmFI GGGAC 2 cut(s) 251, 619
BsnI GGCC 5 cut(s) 5, 231, 237, 313, 412
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 2 cut(s) 48, 254
BspACI CCGC 4 cut(s) 172, 238, 390, 725
BspANI GGCC 5 cut(s) 5, 231, 237, 313, 412
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 4 cut(s) 140, 232, 461, 676
BspPI GGATC 2 cut(s) 56, 262
BspQI GCTCTTC 1 cut(s) 660
BspT107I GGYRCC 2 cut(s) 138, 459
BspTI CTTAAG 2 cut(s) 593, 848
BsrDI GCAATG 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 705
BssAI RCCGGY 1 cut(s) 705
BssECI CCNNGG 3 cut(s) 232, 331, 636
BssMI GATC 2 cut(s) 48, 254
BssNI GRCGYC 2 cut(s) 176, 822
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 638, 826
Bst4CI ACNGT 1 cut(s) 976
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 2 cut(s) 176, 822
BstAFI CTTAAG 2 cut(s) 593, 848
BstC8I GCNNGC 5 cut(s) 174, 202, 414, 473, 930
BstDEI CTNAG 2 cut(s) 212, 659
BstF5I GGATG 2 cut(s) 486, 863
BstFNI CGCG 1 cut(s) 172
BstKTI GATC 2 cut(s) 51, 257
BstMAI GTCTC 2 cut(s) 14, 223
BstMBI GATC 2 cut(s) 48, 254
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 4 cut(s) 237, 468, 539, 844
BstNI CCWGG 2 cut(s) 638, 826
BstNSI RCATGY 5 cut(s) 266, 475, 580, 634, 932
BstPAI GACNNNNGTC 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 232, 636, 824
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 801
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BstZI CGGCCG 1 cut(s) 235
BsuRI GGCC 5 cut(s) 5, 231, 237, 313, 412
BtrI CACGTC 1 cut(s) 898
BtsCI GGATG 2 cut(s) 486, 863
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 5 cut(s) 174, 202, 414, 473, 930
CciI TCATGA 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 705
Cfr13I GGNCC 2 cut(s) 62, 230
CseI GACGC 2 cut(s) 165, 830
Csp6I GTAC 5 cut(s) 139, 291, 736, 832, 868
CspAI ACCGGT 1 cut(s) 705
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 8 cut(s) 263, 275, 472, 491, 577, 631, 649, 929
CviQI GTAC 5 cut(s) 139, 291, 736, 832, 868
DdeI CTNAG 2 cut(s) 212, 659
DpnI GATC 2 cut(s) 50, 256
DpnII GATC 2 cut(s) 48, 254
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 2 cut(s) 3, 235
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 533
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 62
Eco52I CGGCCG 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 636, 824
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 8 cut(s) 266, 278, 475, 494, 580, 634, 652, 932
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 2 cut(s) 251, 619
FatI CATG 8 cut(s) 262, 274, 471, 490, 576, 630, 648, 928
FauI CCCGC 2 cut(s) 165, 383
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 3 cut(s) 238, 726, 815
FokI GGATG 2 cut(s) 473, 870
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 3 cut(s) 238, 726, 815
FspBI CTAG 3 cut(s) 222, 399, 719
GluI GCNGC 3 cut(s) 238, 726, 815
HaeIII GGCC 5 cut(s) 5, 231, 237, 313, 412
HapII CCGG 5 cut(s) 94, 228, 234, 457, 706
HgaI GACGC 2 cut(s) 165, 830
Hin1I GRCGYC 2 cut(s) 176, 822
Hin1II CATG 8 cut(s) 266, 278, 475, 494, 580, 634, 652, 932
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 7 cut(s) 8, 102, 133, 216, 320, 605, 641
HpaII CCGG 5 cut(s) 94, 228, 234, 457, 706
Hpy166II GTNNAC 2 cut(s) 441, 628
Hpy188I TCNGA 4 cut(s) 62, 85, 101, 215
Hpy188III TCNNGA 9 cut(s) 30, 52, 106, 161, 275, 362, 587, 697, 962
Hpy8I GTNNAC 2 cut(s) 441, 628
Hpy99I CGWCG 3 cut(s) 172, 181, 799
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 976
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 6 cut(s) 430, 554, 648, 746, 817, 932
HpyF10VI GCNNNNNNNGC 4 cut(s) 237, 468, 539, 844
HpyF3I CTNAG 2 cut(s) 212, 659
HpySE526I ACGT 1 cut(s) 897
Hsp92I GRCGYC 2 cut(s) 176, 822
Hsp92II CATG 8 cut(s) 266, 278, 475, 494, 580, 634, 652, 932
KpnI GGTACC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 48, 254
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 1 cut(s) 801
LweI GCATC 4 cut(s) 417, 495, 748, 848
MaeI CTAG 3 cut(s) 222, 399, 719
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 4 cut(s) 499, 584, 662, 914
MalI GATC 2 cut(s) 50, 256
MboI GATC 2 cut(s) 48, 254
MboII GAAGA 8 cut(s) 142, 249, 311, 382, 647, 701, 794, 917
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 3 cut(s) 109, 543, 941
MlyI GAGTC 2 cut(s) 225, 614
MmeI TCCRAC 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 957
MseI TTAA 7 cut(s) 383, 527, 594, 681, 752, 789, 849
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 838
MspCI CTTAAG 2 cut(s) 593, 848
MspI CCGG 5 cut(s) 94, 228, 234, 457, 706
MspR9I CCNGG 3 cut(s) 234, 638, 826
MvaI CCWGG 2 cut(s) 638, 826
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 4 cut(s) 237, 468, 539, 844
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 48, 254
NlaIII CATG 8 cut(s) 266, 278, 475, 494, 580, 634, 652, 932
NlaIV GGNNCC 4 cut(s) 140, 232, 461, 676
NmuCI GTSAC 1 cut(s) 584
NspI RCATGY 5 cut(s) 266, 475, 580, 634, 932
PaeI GCATGC 2 cut(s) 475, 932
PagI TCATGA 1 cut(s) 274
PciI ACATGT 2 cut(s) 262, 630
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 5 cut(s) 8, 102, 133, 320, 641
PflFI GACNNNGTC 1 cut(s) 305
PinAI ACCGGT 1 cut(s) 705
PkrI GCNGC 3 cut(s) 239, 727, 816
PleI GAGTC 2 cut(s) 224, 613
PpsI GAGTC 2 cut(s) 224, 613
PscI ACATGT 2 cut(s) 262, 630
PshAI GACNNNNGTC 1 cut(s) 800
Psp124BI GAGCTC 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 636, 824
PspGI CCWGG 2 cut(s) 636, 824
PspN4I GGNNCC 4 cut(s) 140, 232, 461, 676
PspPI GGNCC 2 cut(s) 62, 230
PsuI RGATCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 838
RsaI GTAC 5 cut(s) 140, 292, 737, 833, 869
RsaNI GTAC 5 cut(s) 139, 291, 736, 832, 868
RseI CAYNNNNRTG 1 cut(s) 495
SacI GAGCTC 1 cut(s) 535
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 7 cut(s) 383, 527, 594, 681, 752, 789, 849
SatI GCNGC 3 cut(s) 238, 726, 815
Sau3AI GATC 2 cut(s) 48, 254
Sau96I GGNCC 2 cut(s) 62, 230
SchI GAGTC 2 cut(s) 225, 614
ScrFI CCNGG 3 cut(s) 234, 638, 826
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 4 cut(s) 417, 495, 748, 848
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 3 cut(s) 593, 806, 848
SmoI CTYRAG 3 cut(s) 593, 806, 848
SphI GCATGC 2 cut(s) 475, 932
Sse9I AATT 3 cut(s) 109, 543, 941
SsiI CCGC 4 cut(s) 172, 238, 390, 725
SspMI CTAG 3 cut(s) 222, 399, 719
SstI GAGCTC 1 cut(s) 535
StyD4I CCNGG 3 cut(s) 232, 636, 824
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 976
TaiI ACGT 1 cut(s) 900
TaqI TCGA 4 cut(s) 51, 122, 179, 794
TaqII GACCGA 1 cut(s) 951
TasI AATT 3 cut(s) 109, 543, 941
TatI WGTACW 1 cut(s) 867
TauI GCSGC 2 cut(s) 240, 728
TfiI GAWTC 5 cut(s) 8, 102, 133, 320, 641
Tru1I TTAA 7 cut(s) 383, 527, 594, 681, 752, 789, 849
Tru9I TTAA 7 cut(s) 383, 527, 594, 681, 752, 789, 849
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 1 cut(s) 814
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 3 cut(s) 263, 291, 331
TspGWI ACGGA 2 cut(s) 424, 965
TspRI CASTG 1 cut(s) 517
Tth111I GACNNNGTC 1 cut(s) 305
Vha464I CTTAAG 2 cut(s) 593, 848
VpaK11BI GGWCC 1 cut(s) 62
XceI RCATGY 5 cut(s) 266, 475, 580, 634, 932
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 3 cut(s) 222, 399, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.