pycom08g18350

SnoaL-like domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
18587577 .. 18588680
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGCTGATGATAAACTCCTTATTCCTCTCATCTTCTTCTTCGTCTCCTCCTCTCCTTCTTAACCACACCAAATCTCCTTCCATTCCAATTACCACTTCCAACCTCTCCATATCCAATCCTGCAACTGCTATCAGCACACCTCTGAGATGGACCCCGCAGACCCTTCAGTTTCGGGTCTCATCGTCATCAGCCAATCGGACAGTCGAGGTTGCATCACCGCCGGGAACTGATGGCGATGAGTCTGCTGATGTGGTGGAATCTGGAGCGGACGTTGTGAGGAAGTTCTACGGAGGAGTCAACCGCCAAGATTTGGGTTCAGTGGAGGGGCTCATAGCAGAGAAATGTGTGTACGAGGACCTCGTTTTTCCTCGTCCTTTCGTTGGTCGCAAGACTTCAATTCTTCAAAAAGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

14.79

Weight (kDa)

6.56

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009015)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 266
AciI CCGC 4 cut(s) 155, 218, 266, 301
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 310, 380
AgsI TTSAA 3 cut(s) 396, 404, 413
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
Alw26I GTCTC 2 cut(s) 48, 181
AspS9I GGNCC 2 cut(s) 150, 355
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 207
AvaII GGWCC 2 cut(s) 150, 355
BanII GRGCYC 1 cut(s) 330
BccI CCATC 2 cut(s) 141, 224
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 48, 181
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 2 cut(s) 150, 355
BmgT120I GGNCC 2 cut(s) 150, 355
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 181
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 255, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 380
BseLI CCNNNNNNNGG 2 cut(s) 310, 380
BseMII CTCAG 1 cut(s) 134
BseRI GAGGAG 3 cut(s) 36, 39, 306
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 310, 380
BsmAI GTCTC 2 cut(s) 48, 181
BsmBI CGTCTC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 330
BspACI CCGC 4 cut(s) 155, 218, 266, 301
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 48, 181
BstSCI CCNGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 150, 355
Csp6I GTAC 1 cut(s) 349
CviJI RGCY 2 cut(s) 191, 328
CviKI_1 RGCY 2 cut(s) 191, 328
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 150, 355
Eco57I CTGAAG 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 48
FaiI YATR 2 cut(s) 110, 332
FauI CCCGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 282
HapII CCGG 1 cut(s) 221
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 3 cut(s) 239, 257, 294
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 298, 349
Hpy188I TCNGA 2 cut(s) 144, 198
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 2 cut(s) 298, 349
HpyAV CCTTC 3 cut(s) 65, 87, 173
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 122, 212
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 270
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 3 cut(s) 132, 234, 246
LweI GCATC 1 cut(s) 221
MaeII ACGT 1 cut(s) 270
MbiI CCGCTC 1 cut(s) 266
MboII GAAGA 4 cut(s) 24, 27, 30, 392
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 87, 396
MlyI GAGTC 2 cut(s) 248, 303
MmeI TCCRAC 1 cut(s) 123
MseI TTAA 1 cut(s) 60
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 222
NciI CCSGG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PfeI GAWTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 310
PleI GAGTC 2 cut(s) 247, 302
PpsI GAGTC 2 cut(s) 247, 302
PpuMI RGGWCCY 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 150, 355
PspPPI RGGWCCY 1 cut(s) 355
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 150, 355
SchI GAGTC 2 cut(s) 248, 303
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 330
SetI ASST 5 cut(s) 105, 142, 210, 273, 360
SfaNI GCATC 1 cut(s) 221
SinI GGWCC 2 cut(s) 150, 355
Sse9I AATT 2 cut(s) 87, 396
SsiI CCGC 4 cut(s) 155, 218, 266, 301
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 87, 396
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 150, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.