pycom09g01510

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012257
Physical Location & Seq
Reverse (-)
1203092 .. 1205085
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
ATGGACAGCGGCGAGACCCTTGTGCAGTACTATGTGCCTTACCTCTCTGCTATCCAAATTTTCACTAGCAATTCATCTGTGAATAGCTTCAGGGAAGAGGCCGAATCAGGCGACTGCGAGACTAGGGATTCGTTTAGCGATTCGTGCAGCTTTGAGAGTGAAAGTGATAAGTTGTGCAGATGGGATGGATGCTCTTCGGAAGATGGCGGGTTCGAGCAAGACAATCTCTGGCATGTGAATGATAGATTAGGGTGCCTATATTTTGAGTATTTTGAGAGATCTACTCCCTATGGAAGAGTTCCTCTCATGGATAAGATCAATTCGTTAGCTCAAAGATACCCTGGTTTGATGTCATTAAGGAGCGTTGATCTCTCACCAGCTAGTTGGATGGCTGTTGCTTGGTATCCAATTTATCACATTCCAATGGGAAGGACTATAAAGGATCTGTCCACATCCTTCCTCACTTACCACACCCTTTCATCTTCTTTTCAAGACATGGACCTTGAGGATGATATTGAGAGCAACGAGCAACAAAAGCGTAAGAAAGGGGAAGGCATCTCTCTCCCTCCATTTGGTTTGGCCACTTACAAGATGCAAGGAAATGTGTGGGTATCAGGCAATTGTGGAAAGGACCGAGAGAGGCTCATGTCGCTATTGAGCGTGGCGGATTCTTGGCTAAAGCAGCTTAGGGTCCAGCACCATGACTTCAACTATTTCACAGCTATTCGGCGTGGCCAGTGCCACTACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

251

Amino Acids

28.74

Weight (kDa)

4.99

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 3 - 239 8.9e-89 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03420
fragaria_vesca FvH4_6g45060 FvH4_6g45060
malus_domestica MD09G1090400.v1.1 MD17G1079500.v1.1
prunus_persica Prupe.3G235200_v2.0.a1 Prupe.3G235200_v2.0.a1
pyrus_communis pycom09g01510 pycom17g07850
rosa_chinensis RchiOBHm_Chr2g0162411
rosa_laevigata RLG00000021345
rosa_multiflora Rmu_sc0004020.1_g000002
rosa_roxburghii Rroxscaffold_2G00087950
rosa_rugosa Rorug02G0497800
rosa_samantha Rh2AG563500 Rh2BG576200 Rh2CG546300 Rh2DG586200
rosa_wichuraiana Rw2G046640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AciI CCGC 3 cut(s) 9, 207, 665
AclWI GGATC 1 cut(s) 450
AcoI YGGCCR 2 cut(s) 579, 733
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 2 cut(s) 491, 709
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 6 cut(s) 87, 150, 329, 380, 685, 722
AluI AGCT 6 cut(s) 87, 150, 329, 380, 685, 722
Alw26I GTCTC 2 cut(s) 8, 113
AlwI GGATC 1 cut(s) 450
AoxI GGCC 3 cut(s) 99, 579, 733
ApeKI GCWGC 2 cut(s) 147, 682
ApoI RAATTY 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 499, 631, 691
AsuHPI GGTGA 1 cut(s) 366
AvaII GGWCC 3 cut(s) 499, 631, 691
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 2 cut(s) 581, 735
BanI GGYRCC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 159, 694
BccI CCATC 4 cut(s) 174, 179, 197, 382
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 8, 113
BfaI CTAG 3 cut(s) 66, 123, 381
BfuI GTATCC 1 cut(s) 414
BglII AGATCT 1 cut(s) 278
BisI GCNGC 3 cut(s) 10, 148, 683
BlsI GCNGC 3 cut(s) 11, 149, 684
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 3 cut(s) 499, 631, 691
BmgT120I GGNCC 3 cut(s) 499, 631, 691
BmiI GGNNCC 2 cut(s) 254, 692
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 3 cut(s) 179, 564, 582
BplI GAGNNNNNCTC 6 cut(s) 268, 300, 288, 320, 627, 659
Bpu10I CCTNAGC 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse1I ACTGG 1 cut(s) 736
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 5 cut(s) 190, 194, 393, 452, 514
BseLI CCNNNNNNNGG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 736
BseXI GCAGC 2 cut(s) 159, 694
BsgI GTGCAG 3 cut(s) 44, 166, 196
BshFI GGCC 3 cut(s) 101, 581, 735
BshNI GGYRCC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 2 cut(s) 8, 113
BsnI GGCC 3 cut(s) 101, 581, 735
Bso31I GGTCTC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 278, 315, 367, 442
BspACI CCGC 3 cut(s) 9, 207, 665
BspANI GGCC 3 cut(s) 101, 581, 735
BspLI GGNNCC 2 cut(s) 254, 692
BspPI GGATC 1 cut(s) 450
BspQI GCTCTTC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 736
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 4 cut(s) 278, 315, 367, 442
Bst2UI CCWGG 1 cut(s) 342
Bst6I CTCTTC 3 cut(s) 90, 199, 289
BstDEI CTNAG 1 cut(s) 686
BstF5I GGATG 5 cut(s) 190, 194, 393, 452, 514
BstKTI GATC 4 cut(s) 281, 318, 370, 445
BstMAI GTCTC 2 cut(s) 8, 113
BstMBI GATC 4 cut(s) 278, 315, 367, 442
BstMWI GCNNNNNNNGC 4 cut(s) 144, 535, 649, 682
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 159, 694
BstX2I RGATCY 2 cut(s) 278, 442
BstXI CCANNNNNNTGG 1 cut(s) 384
BstYI RGATCY 2 cut(s) 278, 442
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 3 cut(s) 101, 581, 735
BtsCI GGATG 5 cut(s) 190, 194, 393, 452, 514
BtsIMutI CAGTG 1 cut(s) 743
Cfr13I GGNCC 3 cut(s) 499, 631, 691
Csp6I GTAC 1 cut(s) 28
CviAII CATG 5 cut(s) 233, 307, 496, 646, 701
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 686
DpnI GATC 4 cut(s) 280, 317, 369, 444
DpnII GATC 4 cut(s) 278, 315, 367, 442
EaeI YGGCCR 2 cut(s) 579, 733
Eam1104I CTCTTC 3 cut(s) 90, 199, 289
EarI CTCTTC 3 cut(s) 90, 199, 289
EciI GGCGGA 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 499, 631, 691
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 5 cut(s) 236, 310, 499, 649, 704
FaiI YATR 9 cut(s) 33, 234, 259, 291, 308, 437, 497, 647, 702
FatI CATG 5 cut(s) 232, 306, 495, 645, 700
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 3 cut(s) 10, 148, 683
FokI GGATG 5 cut(s) 197, 201, 400, 439, 521
Fsp4HI GCNGC 3 cut(s) 10, 148, 683
FspBI CTAG 3 cut(s) 66, 123, 381
GluI GCNGC 3 cut(s) 10, 148, 683
HaeIII GGCC 3 cut(s) 101, 581, 735
Hin1II CATG 5 cut(s) 236, 310, 499, 649, 704
HinfI GANTC 4 cut(s) 104, 128, 140, 668
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 3 cut(s) 423, 466, 545
HpyCH4V TGCA 4 cut(s) 25, 147, 177, 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 535, 649, 682
HpyF3I CTNAG 1 cut(s) 686
Hsp92II CATG 5 cut(s) 236, 310, 499, 649, 704
Kzo9I GATC 4 cut(s) 278, 315, 367, 442
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 9 cut(s) 76, 93, 214, 327, 354, 390, 600, 707, 749
Lsp1109I GCAGC 2 cut(s) 159, 694
LweI GCATC 3 cut(s) 179, 564, 582
MaeI CTAG 3 cut(s) 66, 123, 381
MalI GATC 4 cut(s) 280, 317, 369, 444
MboI GATC 4 cut(s) 278, 315, 367, 442
MboII GAAGA 5 cut(s) 107, 186, 212, 306, 474
MfeI CAATTG 1 cut(s) 619
MflI RGATCY 2 cut(s) 278, 442
MlsI TGGCCA 2 cut(s) 581, 735
MluCI AATT 5 cut(s) 57, 70, 319, 408, 619
MluNI TGGCCA 2 cut(s) 581, 735
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 7 cut(s) 53, 91, 312, 470, 499, 576, 633
Mox20I TGGCCA 2 cut(s) 581, 735
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 2 cut(s) 581, 735
MseI TTAA 2 cut(s) 356, 751
MslI CAYNNNNRTG 2 cut(s) 237, 422
Msp20I TGGCCA 2 cut(s) 581, 735
MspA1I CMGCKG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 619
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 144, 535, 649, 682
NdeII GATC 4 cut(s) 278, 315, 367, 442
NlaIII CATG 5 cut(s) 236, 310, 499, 649, 704
NlaIV GGNNCC 2 cut(s) 254, 692
NspI RCATGY 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 4 cut(s) 104, 128, 140, 668
PkrI GCNGC 3 cut(s) 11, 149, 684
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 254, 692
PspPI GGNCC 3 cut(s) 499, 631, 691
PsuI RGATCY 2 cut(s) 278, 442
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 237, 422
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 356, 751
SatI GCNGC 3 cut(s) 10, 148, 683
Sau3AI GATC 4 cut(s) 278, 315, 367, 442
Sau96I GGNCC 3 cut(s) 499, 631, 691
ScaI AGTACT 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 342
SetI ASST 9 cut(s) 45, 89, 152, 331, 382, 504, 687, 724, 750
SfaNI GCATC 3 cut(s) 179, 564, 582
SinI GGWCC 3 cut(s) 499, 631, 691
SmiMI CAYNNNNRTG 2 cut(s) 237, 422
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 5 cut(s) 57, 70, 319, 408, 619
SsiI CCGC 3 cut(s) 9, 207, 665
SspMI CTAG 3 cut(s) 66, 123, 381
StyD4I CCNGG 1 cut(s) 340
TaqI TCGA 1 cut(s) 213
TaqII GACCGA 1 cut(s) 648
TasI AATT 5 cut(s) 57, 70, 319, 408, 619
TatI WGTACW 1 cut(s) 27
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 4 cut(s) 104, 128, 140, 668
Tru1I TTAA 2 cut(s) 356, 751
Tru9I TTAA 2 cut(s) 356, 751
TscAI CASTG 1 cut(s) 743
TseI GCWGC 2 cut(s) 147, 682
TspDTI ATGAA 2 cut(s) 63, 468
TspRI CASTG 1 cut(s) 743
VpaK11BI GGWCC 3 cut(s) 499, 631, 691
XapI RAATTY 1 cut(s) 57
XceI RCATGY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 3 cut(s) 66, 123, 381
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.