pycom09g02810

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016180
Physical Location & Seq
Forward (+)
2062287 .. 2065432
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGGCCGAGTCTTCAAAGGAAGAGGTGCTTCAGCTCATCAAGCGCTTCGGGGCTTATCTCACTGTCAAGATGTCCAGTCTATTCCCGATCTCCCTCCACAATCTGAATTCACGTTCTATTGGGGCAATTGCGGGCTTTGCTGTCGCAATAGTTTTCACATGGAGGCTGCTGAGATCACCGAGTGGACCTCAAAGAAGGCAACCCAAGCGACAGGCACCTGCATCGAGTAGTTCTGGTGTCAGTTCAAATTCAAATGCAACATTGACAACTCCGGGAGTTTCATCTTCAGAGGACTCCAGAACCCAAAACGTTGTTGATGAATTTTTTCAGCCAGTAAAGCCTACTTTGGGGCAAGTAGTTCAGCAGAAACTGAGTGAAGGAAGAAAGGTAACTTGTCGTTTACTCGGAGTAATCCTTGAGGAAAGTACCCCGGAGGAACTTCAGAAACATGTTACTGTGAGGTACTCAGTGCTGGAAGTACTCTTGGAGATCACAAAATTTTGTGATCTGTATCTCATGGAAACAGTTCTCGATGATGAAAGTGAAAAAAAGGTTCTAGTGGCTTTGGAAGATGCTGGGATTTTCACATCTGGAGGTCTGGCCAAAGACAAGGTTCTCTTCTGTAGCACAGAGAATGGACGGACTTCTTTTGTTCGGCAATTGGAACCAGATTGGCATATCGACACAAATCCTGACATCATATTCCAATTATCTGTATATTCTTATTACTTACCTAGTTTGTCCACACAACATTCTTCGATTTCATTCCCCATAGGTTTATCAAGTATCAGCTTCACATATCTCCTACCAGAACAGAACGGGCTGCATCTAATGCATTCAACTCCCCATCCTTGGAACAGTTCTTTGGACCTGTTTGACGCCCCGAGAAACGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.25

Weight (kDa)

6.0

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_Pex22 PF22978 118 - 240 2.7e-37 Peroxisome biogenesis protein 22, Haloacid dehydrogenase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21865
fragaria_vesca FvH4_6g43550 FvH4_6g43550
malus_domestica MD09G1105000.v1.1 MD17G1092700.v1.1
prunus_persica Prupe.3G220500_v2.0.a1 Prupe.3G220500_v2.0.a1
pyrus_communis pycom09g02810 pycom17g09030
rosa_chinensis RchiOBHm_Chr2g0160081
rosa_laevigata RLG00000021196
rosa_rugosa Rorug02G0480900
rosa_samantha Rh2AG546800 Rh2BG560200
rosa_wichuraiana Rw2G045220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 214
AciI CCGC 1 cut(s) 131
AclI AACGTT 1 cut(s) 309
AcoI YGGCCR 2 cut(s) 3, 600
AcsI RAATTY 4 cut(s) 106, 247, 320, 497
AcuI CTGAAG 3 cut(s) 14, 270, 425
AcyI GRCGYC 1 cut(s) 879
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 3 cut(s) 427, 464, 480
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 347, 852
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 4 cut(s) 15, 246, 252, 840
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 2 cut(s) 34, 792
AluI AGCT 2 cut(s) 34, 792
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 883
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 2 cut(s) 3, 600
ApeKI GCWGC 2 cut(s) 166, 823
ApoI RAATTY 4 cut(s) 106, 247, 320, 497
Asp700I GAANNNNTTC 2 cut(s) 324, 525
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 185, 868
AsuC2I CCSGG 2 cut(s) 273, 431
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 883
AvaII GGWCC 2 cut(s) 185, 868
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 3
BbvI GCAGC 2 cut(s) 153, 810
BccI CCATC 1 cut(s) 855
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BcnI CCSGG 2 cut(s) 273, 431
BfaI CTAG 2 cut(s) 557, 735
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 2 cut(s) 167, 824
BlsI GCNGC 2 cut(s) 168, 825
BmcAI AGTACT 1 cut(s) 480
Bme1390I CCNGG 2 cut(s) 273, 431
Bme18I GGWCC 2 cut(s) 185, 868
BmeT110I CYCGRG 1 cut(s) 883
BmgT120I GGNCC 2 cut(s) 185, 868
BmiI GGNNCC 2 cut(s) 216, 666
BmrFI CCNGG 2 cut(s) 273, 431
BmsI GCATC 3 cut(s) 230, 562, 835
BpiI GAAGAC 1 cut(s) 3
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpmI CTGGAG 2 cut(s) 280, 612
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 2 cut(s) 273, 431
BsaBI GATNNNNATC 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 879
BsaJI CCNNGG 2 cut(s) 429, 851
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 852
Bse1I ACTGG 2 cut(s) 75, 332
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 429, 851
BseGI GGATG 1 cut(s) 847
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 347, 852
BseMII CTCAG 3 cut(s) 161, 362, 480
BseNI ACTGG 2 cut(s) 75, 332
BseXI GCAGC 2 cut(s) 153, 810
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 2 cut(s) 5, 602
BshNI GGYRCC 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 883
BsiSI CCGG 2 cut(s) 272, 431
BslI CCNNNNNNNGG 2 cut(s) 347, 852
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 2 cut(s) 5, 602
BsoBI CYCGRG 1 cut(s) 883
Bsp143I GATC 4 cut(s) 87, 173, 489, 505
BspACI CCGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 5, 602
BspCNI CTCAG 3 cut(s) 162, 363, 479
BspLI GGNNCC 2 cut(s) 216, 666
BspMI ACCTGC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 75, 332
BssECI CCNNGG 2 cut(s) 429, 851
BssMI GATC 4 cut(s) 87, 173, 489, 505
BssNI GRCGYC 1 cut(s) 879
BssT1I CCWWGG 1 cut(s) 851
Bst4CI ACNGT 4 cut(s) 64, 457, 526, 860
Bst6I CTCTTC 2 cut(s) 15, 623
BstACI GRCGYC 1 cut(s) 879
BstAPI GCANNNNNTGC 1 cut(s) 832
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 170, 371, 466
BstF5I GGATG 1 cut(s) 847
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 4 cut(s) 90, 176, 492, 508
BstMBI GATC 4 cut(s) 87, 173, 489, 505
BstMWI GCNNNNNNNGC 5 cut(s) 40, 137, 205, 337, 832
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 271, 429
BstSFI CTRYAG 1 cut(s) 622
BstV1I GCAGC 2 cut(s) 153, 810
BstV2I GAAGAC 1 cut(s) 3
BsuRI GGCC 2 cut(s) 5, 602
BtsCI GGATG 1 cut(s) 847
BtsIMutI CAGTG 2 cut(s) 60, 474
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 185, 868
CseI GACGC 1 cut(s) 887
Csp6I GTAC 3 cut(s) 426, 463, 479
CviAII CATG 3 cut(s) 159, 449, 517
CviQI GTAC 3 cut(s) 426, 463, 479
DdeI CTNAG 3 cut(s) 170, 371, 466
DpnI GATC 4 cut(s) 89, 175, 491, 507
DpnII GATC 4 cut(s) 87, 173, 489, 505
DraIII CACNNNGTG 1 cut(s) 182
EaeI YGGCCR 2 cut(s) 3, 600
Eam1104I CTCTTC 2 cut(s) 15, 623
EarI CTCTTC 2 cut(s) 15, 623
Eco130I CCWWGG 1 cut(s) 851
Eco47I GGWCC 2 cut(s) 185, 868
Eco47III AGCGCT 1 cut(s) 44
Eco57I CTGAAG 3 cut(s) 14, 270, 425
Eco88I CYCGRG 1 cut(s) 883
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 851
EcoT22I ATGCAT 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 851
FaeI CATG 3 cut(s) 162, 452, 520
FaiI YATR 8 cut(s) 160, 450, 518, 678, 701, 718, 773, 799
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 602, 634
FatI CATG 3 cut(s) 158, 448, 516
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 167, 824
FokI GGATG 1 cut(s) 834
Fsp4HI GCNGC 2 cut(s) 167, 824
FspBI CTAG 2 cut(s) 557, 735
GlaI GCGC 1 cut(s) 44
GluI GCNGC 2 cut(s) 167, 824
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 2 cut(s) 280, 612
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 2 cut(s) 5, 602
HapII CCGG 2 cut(s) 272, 431
HgaI GACGC 1 cut(s) 887
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 879
Hin1II CATG 3 cut(s) 162, 452, 520
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 2 cut(s) 8, 293
HpaII CCGG 2 cut(s) 272, 431
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 3 cut(s) 185, 401, 744
Hpy188I TCNGA 4 cut(s) 105, 289, 407, 444
Hpy188III TCNNGA 6 cut(s) 67, 85, 297, 530, 591, 692
Hpy8I GTNNAC 3 cut(s) 185, 401, 744
HpyAV CCTTC 2 cut(s) 189, 371
HpyCH4III ACNGT 4 cut(s) 64, 457, 526, 860
HpyCH4IV ACGT 2 cut(s) 112, 309
HpyCH4V TGCA 4 cut(s) 221, 257, 826, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 137, 205, 337, 832
HpyF3I CTNAG 3 cut(s) 170, 371, 466
HpySE526I ACGT 2 cut(s) 112, 309
Hsp92I GRCGYC 1 cut(s) 879
Hsp92II CATG 3 cut(s) 162, 452, 520
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 4 cut(s) 87, 173, 489, 505
Lsp1109I GCAGC 2 cut(s) 153, 810
LweI GCATC 3 cut(s) 230, 562, 835
MaeI CTAG 2 cut(s) 557, 735
MaeII ACGT 2 cut(s) 112, 309
MaeIII GTNAC 2 cut(s) 388, 451
MalI GATC 4 cut(s) 89, 175, 491, 507
MboI GATC 4 cut(s) 87, 173, 489, 505
MboII GAAGA 7 cut(s) 3, 32, 276, 393, 581, 610, 747
MfeI CAATTG 2 cut(s) 126, 659
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 7 cut(s) 106, 126, 247, 320, 497, 659, 707
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 2 cut(s) 17, 287
MnlI CCTC 9 cut(s) 16, 104, 156, 198, 283, 412, 427, 453, 587
Mox20I TGGCCA 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 837
MroXI GAANNNNTTC 2 cut(s) 324, 525
MscI TGGCCA 1 cut(s) 602
Msp20I TGGCCA 1 cut(s) 602
MspI CCGG 2 cut(s) 272, 431
MspR9I CCNGG 2 cut(s) 273, 431
MunI CAATTG 2 cut(s) 126, 659
Mva1269I GAATGC 1 cut(s) 835
MwoI GCNNNNNNNGC 5 cut(s) 40, 137, 205, 337, 832
NciI CCSGG 2 cut(s) 273, 431
NdeII GATC 4 cut(s) 87, 173, 489, 505
NlaIII CATG 3 cut(s) 162, 452, 520
NlaIV GGNNCC 2 cut(s) 216, 666
NmeAIII GCCGAG 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 226
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 835
PdmI GAANNNNTTC 2 cut(s) 324, 525
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 2 cut(s) 168, 825
PleI GAGTC 2 cut(s) 16, 287
PpsI GAGTC 2 cut(s) 16, 287
PscI ACATGT 1 cut(s) 448
Psp1406I AACGTT 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 575
PspN4I GGNNCC 2 cut(s) 216, 666
PspPI GGNCC 2 cut(s) 185, 868
PstNI CAGNNNCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 427, 464, 480
RsaNI GTAC 3 cut(s) 426, 463, 479
SatI GCNGC 2 cut(s) 167, 824
Sau3AI GATC 4 cut(s) 87, 173, 489, 505
Sau96I GGNCC 2 cut(s) 185, 868
ScaI AGTACT 1 cut(s) 480
SchI GAGTC 2 cut(s) 17, 287
ScrFI CCNGG 2 cut(s) 273, 431
SfaNI GCATC 3 cut(s) 230, 562, 835
SfcI CTRYAG 1 cut(s) 622
SinI GGWCC 2 cut(s) 185, 868
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 7 cut(s) 106, 126, 247, 320, 497, 659, 707
SsiI CCGC 1 cut(s) 131
SspMI CTAG 2 cut(s) 557, 735
StyD4I CCNGG 2 cut(s) 271, 429
StyI CCWWGG 1 cut(s) 851
TaaI ACNGT 4 cut(s) 64, 457, 526, 860
TaiI ACGT 2 cut(s) 115, 312
TaqI TCGA 4 cut(s) 224, 531, 681, 758
TasI AATT 7 cut(s) 106, 126, 247, 320, 497, 659, 707
TatI WGTACW 1 cut(s) 478
TscAI CASTG 2 cut(s) 67, 474
TseI GCWGC 2 cut(s) 166, 823
TspDTI ATGAA 4 cut(s) 270, 333, 552, 753
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 2 cut(s) 67, 474
VpaK11BI GGWCC 2 cut(s) 185, 868
XapI RAATTY 4 cut(s) 106, 247, 320, 497
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 2 cut(s) 324, 525
XspI CTAG 2 cut(s) 557, 735
ZrmI AGTACT 1 cut(s) 480
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.