Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0016963

Physical Location & Seq

Genomic Coordinates Reverse (-)

7774598 .. 7775942

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGACGTAGAAATGGACGCTTCTCCAAGCTTCTTCGACCCCGAAGACCTCACAATCAGAGAGAAGTTTCGTCGATACGGGAAAAGGCACTTGACTTCAAGCATATCGCCCCACCAAGAGAATTCAGCTTCTAAATACAGTGAACCTAGGCTACTATATGACGGGCAGAATATACACAGCCCGACCAATGCTGCACTTCTTCTCGAAAATATTAAACAAGAGGCTGAAGGCATTGGTGCTGATCACTTGGAAAGAACTTCTTTCTCAAGAAGGAGGTTGCCTATTGATGGTGCTGATATGGATGAGAAGCATGAGGAGGATTCACTGGTTGATGATGGAGATCCAACCTTTTGCCTTTTTGCATCGCTACTTGATTCTGCTCTTCAAGGGTTGATGCCTTTTCCTGACTTGATACTAAGATTTGAAGAATCCTGCCGAAATGTTTCAGAGTCGATTAGGTATGGTTCCAACATTAGGCATCGTGTTGTAGAGGACAAGTTGATTAGGCAGAAGGCTCAACTCCTGCTCGATGAGGCTGCTTCCTGGTCCCTTCTGTGGTACCTTTATGGAAAAGGAAATCTATCTCTAACTTTGAAGTTTTATTCTAATGCTAATCTATTTAAAAAAACCATTTCTAGGAAAAAACTGCATAAATTTTTGGGTGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

224

Amino Acids

25.57

Weight (kDa)

6.0

Isoelectric Point (pI)

59.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016963)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09660 pycom17g14180
rosa_laevigata	RLG00000001874 RLG00000027916
rosa_multiflora	Rmu_co8207192.1_g000001 Rmu_sc0023243.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151190 Rroxscaffold_3G00232580
rosa_rugosa	Rorug01G0317100
rosa_samantha	Rh3BG172100 Rh7AG386600 Rh7AG395400 Rh7CG405900 Rh7CG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	121, 653
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	4 cut(s)	287, 474, 555, 636
AgsI	TTSAA	4 cut(s)	99, 386, 425, 595
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	2 cut(s)	30, 128
AluI	AGCT	2 cut(s)	30, 128
AlwI	GGATC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	191, 536
ApoI	RAATTY	2 cut(s)	121, 653
Asp700I	GAANNNNTTC	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	558
AspA2I	CCTAGG	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	546
AvrII	CCTAGG	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	178, 523
BccI	CCATC	2 cut(s)	281, 329
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	544
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	2 cut(s)	147, 636
BisI	GCNGC	2 cut(s)	192, 537
BlnI	CCTAGG	1 cut(s)	146
BlsI	GCNGC	2 cut(s)	193, 538
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	3 cut(s)	466, 548, 560
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	3 cut(s)	371, 384, 487
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 474, 555, 636
Bse1I	ACTGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	4 cut(s)	287, 474, 555, 636
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	178, 523
BsgI	GTGCAG	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	4 cut(s)	287, 474, 555, 636
BsmFI	GGGAC	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	241, 340
BspLI	GGNNCC	3 cut(s)	466, 548, 560
BspPI	GGATC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	241, 340
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	244, 343
BstMBI	GATC	2 cut(s)	241, 340
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstV1I	GCAGC	2 cut(s)	178, 523
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	145, 323
Cfr13I	GGNCC	1 cut(s)	546
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	7 cut(s)	30, 128, 151, 180, 224, 515, 536
CviKI_1	RGCY	7 cut(s)	30, 128, 151, 180, 224, 515, 536
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	2 cut(s)	243, 342
DpnII	GATC	2 cut(s)	241, 340
DraI	TTTAAA	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	546
Eco57I	CTGAAG	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	314
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	192, 537
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	192, 537
FspBI	CTAG	2 cut(s)	147, 636
GluI	GCNGC	2 cut(s)	192, 537
HgaI	GACGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	4 cut(s)	320, 374, 428, 449
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	59, 448
Hpy188III	TCNNGA	3 cut(s)	203, 267, 404
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	221, 264, 505, 560
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	194, 362, 649
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	314
KpnI	GGTACC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	241, 340
LguI	GCTCTTC	1 cut(s)	387
LpnPI	CCDG	6 cut(s)	311, 417, 445, 529, 536, 556
Lsp1109I	GCAGC	2 cut(s)	178, 523
LweI	GCATC	3 cut(s)	371, 384, 487
MaeI	CTAG	2 cut(s)	147, 636
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	243, 342
MboI	GATC	2 cut(s)	241, 340
MboII	GAAGA	5 cut(s)	25, 56, 191, 374, 437
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	2 cut(s)	121, 653
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	368, 492
MnlI	CCTC	7 cut(s)	59, 214, 267, 307, 310, 484, 526
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	2 cut(s)	213, 621
MspR9I	CCNGG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	544
NdeII	GATC	2 cut(s)	241, 340
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	3 cut(s)	466, 548, 560
PciSI	GCTCTTC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	320, 374, 428
PkrI	GCNGC	2 cut(s)	193, 538
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	3 cut(s)	466, 548, 560
PspPI	GGNCC	1 cut(s)	546
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	213, 621
SatI	GCNGC	2 cut(s)	192, 537
Sau3AI	GATC	2 cut(s)	241, 340
Sau96I	GGNCC	1 cut(s)	546
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	544
SetI	ASST	9 cut(s)	9, 32, 51, 130, 148, 278, 350, 461, 564
SfaNI	GCATC	3 cut(s)	371, 384, 487
SinI	GGWCC	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	121, 653
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	147, 636
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	5 cut(s)	36, 73, 204, 452, 528
TasI	AATT	2 cut(s)	121, 653
TfiI	GAWTC	3 cut(s)	320, 374, 428
Tru1I	TTAA	2 cut(s)	213, 621
Tru9I	TTAA	2 cut(s)	213, 621
TscAI	CASTG	2 cut(s)	145, 330
TseI	GCWGC	2 cut(s)	191, 536
TspRI	CASTG	2 cut(s)	145, 330
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	2 cut(s)	121, 653
XmaJI	CCTAGG	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	2 cut(s)	147, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.