Rroxscaffold_2G00151190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016963
Physical Location & Seq
Reverse (-)
88468072 .. 88476337
8266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151190.1

Sequence Viewer

Length: 492 bp
ATGGCTCTTCCTCTCGCTTCTAATATCATCCGTATAAAGAAAACTCCATTCCTCTCTAAGCTTTCATTACCTGCAAGAATCGAAACTATAACGACACCCAAAACAAACAACTCCAACTTACTCAACCCCCGTTTCCACCAATGGTGCTCGAAATTCCATTTCCAACACCAAGAGGTTTTTTCGAAAACCCTTGGGAACCCGAAGAACCTATTTTCTGCGCTCATCTCATATGGCTTTCGACACTTGACGGAGCTTCTTACTATCATGTACACGCTTCCCGCATCATTTGGTATCAAAGCGGGTTTCGCCCGCTCCTTAGCAGACAACTATCCAAGGGAGAAGTTCACTACCACCAACCTCAACGATGCTGGTCGTAGAGCAAGGCTCAAGGAGGGGACATGGCTACAATTAAACATATGGAATCTTCTGCAAGAATGCTTGAGAAAACGATTGATCATGAGGACAAATAGCTGCACAAAAAAACCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.81

Weight (kDa)

10.58

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 312
AciI CCGC 3 cut(s) 279, 299, 310
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 269
AluBI AGCT 3 cut(s) 61, 253, 471
AluI AGCT 3 cut(s) 61, 253, 471
Alw21I GWGCWC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 471
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 458
BclI TGATCA 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 472
BlsI GCNGC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 2 cut(s) 290, 355
BplI GAGNNNNNCTC 2 cut(s) 369, 401
Bpu10I CCTNAGC 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 371, 460
BsaJI CCNNGG 2 cut(s) 190, 332
BseDI CCNNGG 2 cut(s) 190, 332
BseGI GGATG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 458
BsgI GTGCAG 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 453
BspACI CCGC 3 cut(s) 279, 299, 310
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 190, 332
BssMI GATC 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 190, 332
Bst6I CTCTTC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 57, 316
BstF5I GGATG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 1 cut(s) 456
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 458
BtsCI GGATG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 310
CciI TCATGA 1 cut(s) 456
CfoI GCGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 268
CviAII CATG 3 cut(s) 265, 399, 457
CviJI RGCY 7 cut(s) 5, 61, 234, 253, 385, 403, 471
CviKI_1 RGCY 7 cut(s) 5, 61, 234, 253, 385, 403, 471
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 2 cut(s) 57, 316
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 190, 332
EcoT14I CCWWGG 2 cut(s) 190, 332
ErhI CCWWGG 2 cut(s) 190, 332
FaeI CATG 3 cut(s) 268, 402, 460
FaiI YATR 9 cut(s) 35, 89, 229, 231, 266, 400, 416, 418, 458
FaqI GGGAC 1 cut(s) 409
FatI CATG 3 cut(s) 264, 398, 456
FauI CCCGC 3 cut(s) 286, 292, 317
FauNDI CATATG 2 cut(s) 229, 416
FbaI TGATCA 1 cut(s) 453
Fnu4HI GCNGC 1 cut(s) 472
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 472
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 472
HhaI GCGC 1 cut(s) 220
Hin1II CATG 3 cut(s) 268, 402, 460
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 78, 421
Hpy166II GTNNAC 2 cut(s) 270, 345
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 2 cut(s) 270, 345
HpyCH4V TGCA 3 cut(s) 74, 430, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 57, 316
Hsp92II CATG 3 cut(s) 268, 402, 460
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 1 cut(s) 453
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 250, 317
LpnPI CCDG 2 cut(s) 84, 354
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 2 cut(s) 290, 355
MalI GATC 1 cut(s) 455
MbiI CCGCTC 1 cut(s) 312
MboI GATC 1 cut(s) 453
MboII GAAGA 2 cut(s) 214, 416
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 2 cut(s) 152, 407
MmeI TCCRAC 2 cut(s) 138, 187
MnlI CCTC 6 cut(s) 21, 62, 166, 368, 385, 453
MseI TTAA 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeI CATATG 2 cut(s) 229, 416
NdeII GATC 1 cut(s) 453
NlaIII CATG 3 cut(s) 268, 402, 460
NlaIV GGNNCC 1 cut(s) 197
NspV TTCGAA 1 cut(s) 182
PagI TCATGA 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 78, 421
PkrI GCNGC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 1 cut(s) 472
Sau3AI GATC 1 cut(s) 453
SduI GDGCHC 1 cut(s) 149
SetI ASST 7 cut(s) 63, 73, 177, 210, 255, 360, 473
SfaNI GCATC 2 cut(s) 290, 355
SfuI TTCGAA 1 cut(s) 182
SmlI CTYRAG 2 cut(s) 386, 439
SmoI CTYRAG 2 cut(s) 386, 439
Sse9I AATT 2 cut(s) 152, 407
SsiI CCGC 3 cut(s) 279, 299, 310
StyI CCWWGG 2 cut(s) 190, 332
TaqI TCGA 4 cut(s) 81, 149, 182, 238
TasI AATT 2 cut(s) 152, 407
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 2 cut(s) 78, 421
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TseI GCWGC 1 cut(s) 471
TspDTI ATGAA 1 cut(s) 54
TspGWI ACGGA 2 cut(s) 20, 263
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.