Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016963

Physical Location & Seq

Genomic Coordinates Forward (+)

18211524 .. 18216932

Gene Structure 5409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCCCCTCACGATGCTCCTTATGAGAATCGACAAGAGATGACATCCTGGAACAAGTGGTGCCGGATTACGGACCTAACGTTATTATGGCTGATTAGGAATAGACGACAACGCAGGCGCCGGTCATCCCGTGATGACCCAAGATGCTCCGTAGCTACCTACGAGCGTCGAGCCGATGAGGCCGAGGTGGGGCCCCAACCCGTGGATGAAGAGGTTGGTCCTATCGCGGAGCCACTTGCTGGTCCGACCATTGATCCCCTCGTCCAACCGCAACCACCTCTGGCGAACCCTCTAGGAAAAGGCACCAGAGTTCGAGCATTTCGCCCTACCGAGAGAATTCGACTTCGTCCACATGAGGAGGACACGCGGGTTGATGATGGAGATACAACTTTTGCTTTATTTGCATCCCTGCTTGACTCTGCTCTTCAAGGGTTGATGCCTTTTCCTGACCTGATACTAAGGCTCGAAGAATCATGCAGAAATGTTTCAGAGACAATTATGTATGGTTCTAACATACGGCATCGGATTGTAGAAGATAAGTTAATGAGGCAGAAGGCTCAGCTCGTGCTTGATGAGGATGCTTCCTGGTCCCTCCTGTGGTATCTATTTGGAAAAGGGACCGAAGAGATCCCTAAAGAGCTCATCTTGCTCATCTCATATGGCTTCCAAAGCTTGACGGAGCCTCTTACTATCATGTATACACTTCCCATATCATTTGGTATCGAGCCGAGTTTCGCCCGCTCCATAGCAGACGACGATCCAAGGGAGAAGTTCACTACCACCAACCTCAACGATGCTGGTCGTAGAGTATCTATCAAAGAAAGTTTCGTTGAAGAGGAACATTCCAAGGGATTCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

286

Amino Acids

32.82

Weight (kDa)

5.26

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016963)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09660 pycom17g14180
rosa_laevigata	RLG00000001874 RLG00000027916
rosa_multiflora	Rmu_co8207192.1_g000001 Rmu_sc0023243.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151190 Rroxscaffold_3G00232580
rosa_rugosa	Rorug01G0317100
rosa_samantha	Rh3BG172100 Rh7AG386600 Rh7AG395400 Rh7CG405900 Rh7CG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	60, 117, 302
AccB7I	CCANNNNNTGG	2 cut(s)	202, 239
AccBSI	CCGCTC	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	698
AccII	CGCG	2 cut(s)	227, 367
AciI	CCGC	4 cut(s)	227, 269, 367, 739
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	3 cut(s)	248, 622, 752
AcsI	RAATTY	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	118
AfiI	CCNNNNNNNGG	5 cut(s)	70, 189, 202, 239, 597
AgsI	TTSAA	2 cut(s)	428, 833
AjnI	CCWGG	2 cut(s)	47, 584
AluBI	AGCT	4 cut(s)	155, 562, 640, 672
AluI	AGCT	4 cut(s)	155, 562, 640, 672
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	3 cut(s)	248, 622, 752
AoxI	GGCC	2 cut(s)	180, 191
ApaI	GGGCCC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	7 cut(s)	73, 191, 192, 218, 242, 588, 618
AvaII	GGWCC	5 cut(s)	73, 218, 242, 588, 618
BaeGI	GKGCMC	1 cut(s)	195
BanI	GGYRCC	3 cut(s)	60, 117, 302
BanII	GRGCYC	2 cut(s)	195, 642
BauI	CACGAG	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	642
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	533
BciT130I	CCWGG	2 cut(s)	49, 586
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	2 cut(s)	293, 859
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	49, 586
Bme18I	GGWCC	5 cut(s)	73, 218, 242, 588, 618
BmgT120I	GGNCC	7 cut(s)	73, 191, 192, 218, 242, 588, 618
BmrFI	CCNGG	2 cut(s)	49, 586
BmsI	GCATC	7 cut(s)	4, 134, 413, 426, 529, 568, 784
Bpu1102I	GCTNAGC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	4 cut(s)	183, 201, 761, 846
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 189, 202, 239, 597
Bse118I	RCCGGY	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	49, 586
BseDI	CCNNGG	4 cut(s)	183, 201, 761, 846
BseGI	GGATG	5 cut(s)	44, 125, 211, 404, 583
BseLI	CCNNNNNNNGG	5 cut(s)	70, 189, 202, 239, 597
BseMII	CTCAG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	195
Bsh1236I	CGCG	2 cut(s)	227, 367
BshFI	GGCC	2 cut(s)	182, 193
BshNI	GGYRCC	3 cut(s)	60, 117, 302
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	2 cut(s)	64, 121
BslFI	GGGAC	2 cut(s)	574, 631
BslI	CCNNNNNNNGG	5 cut(s)	70, 189, 202, 239, 597
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	574, 631
BsnI	GGCC	2 cut(s)	182, 193
Bsp120I	GGGCCC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	195, 642
Bsp143I	GATC	3 cut(s)	253, 627, 757
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	4 cut(s)	227, 269, 367, 739
BspANI	GGCC	2 cut(s)	182, 193
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	2 cut(s)	227, 367
BspPI	GGATC	3 cut(s)	248, 622, 752
BspQI	GCTCTTC	1 cut(s)	429
BspT107I	GGYRCC	3 cut(s)	60, 117, 302
BsrBI	CCGCTC	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	4 cut(s)	183, 201, 761, 846
BssMI	GATC	3 cut(s)	253, 627, 757
BssNAI	GTATAC	1 cut(s)	699
BssNI	GRCGYC	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	563
BssT1I	CCWWGG	2 cut(s)	761, 846
Bst1107I	GTATAC	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	563
Bst2UI	CCWGG	2 cut(s)	49, 586
Bst6I	CTCTTC	4 cut(s)	204, 429, 618, 828
BstACI	GRCGYC	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	116, 739
BstDEI	CTNAG	2 cut(s)	458, 558
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	5 cut(s)	44, 125, 211, 404, 583
BstFNI	CGCG	2 cut(s)	227, 367
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	256, 630, 760
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	3 cut(s)	253, 627, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 401, 646, 669
BstNI	CCWGG	2 cut(s)	49, 586
BstSCI	CCNGG	2 cut(s)	47, 584
BstSLI	GKGCMC	1 cut(s)	195
BstUI	CGCG	2 cut(s)	227, 367
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BstZ17I	GTATAC	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	182, 193
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	5 cut(s)	44, 125, 211, 404, 583
Cac8I	GCNNGC	2 cut(s)	116, 739
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	7 cut(s)	73, 191, 192, 218, 242, 588, 618
CseI	GACGC	1 cut(s)	155
CviAII	CATG	3 cut(s)	353, 474, 694
DdeI	CTNAG	2 cut(s)	458, 558
DinI	GGCGCC	1 cut(s)	119
DpnI	GATC	3 cut(s)	255, 629, 759
DpnII	GATC	3 cut(s)	253, 627, 757
Eam1104I	CTCTTC	4 cut(s)	204, 429, 618, 828
EarI	CTCTTC	4 cut(s)	204, 429, 618, 828
Ecl136II	GAGCTC	1 cut(s)	640
Eco130I	CCWWGG	2 cut(s)	761, 846
Eco24I	GRGCYC	2 cut(s)	195, 642
Eco47I	GGWCC	5 cut(s)	73, 218, 242, 588, 618
Eco53kI	GAGCTC	1 cut(s)	640
EcoICRI	GAGCTC	1 cut(s)	640
EcoO109I	RGGNCCY	2 cut(s)	191, 192
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	47, 584
EcoT14I	CCWWGG	2 cut(s)	761, 846
EcoT38I	GRGCYC	2 cut(s)	195, 642
EgeI	GGCGCC	1 cut(s)	119
EheI	GGCGCC	1 cut(s)	119
ErhI	CCWWGG	2 cut(s)	761, 846
FaeI	CATG	3 cut(s)	356, 477, 697
FaqI	GGGAC	2 cut(s)	574, 631
FatI	CATG	3 cut(s)	352, 473, 693
FauI	CCCGC	2 cut(s)	360, 746
FauNDI	CATATG	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	698
FokI	GGATG	5 cut(s)	31, 112, 218, 391, 590
FriOI	GRGCYC	2 cut(s)	195, 642
FspBI	CTAG	2 cut(s)	293, 859
GlaI	GCGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	182, 193
HapII	CCGG	2 cut(s)	64, 121
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	356, 477, 697
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	4 cut(s)	28, 416, 470, 852
HpaII	CCGG	2 cut(s)	64, 121
Hpy166II	GTNNAC	3 cut(s)	350, 699, 774
Hpy188I	TCNGA	3 cut(s)	246, 490, 525
Hpy188III	TCNNGA	2 cut(s)	11, 446
Hpy8I	GTNNAC	3 cut(s)	350, 699, 774
Hpy99I	CGWCG	2 cut(s)	171, 758
HpyAV	CCTTC	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	404, 477
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 401, 646, 669
HpyF3I	CTNAG	2 cut(s)	458, 558
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	356, 477, 697
HspAI	GCGC	1 cut(s)	118
KasI	GGCGCC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	253, 627, 757
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	5 cut(s)	22, 152, 229, 679, 746
LweI	GCATC	7 cut(s)	4, 134, 413, 426, 529, 568, 784
MaeI	CTAG	2 cut(s)	293, 859
MaeII	ACGT	1 cut(s)	80
MalI	GATC	3 cut(s)	255, 629, 759
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	3 cut(s)	253, 627, 757
MboII	GAAGA	6 cut(s)	221, 416, 479, 545, 635, 845
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	195, 642
MluCI	AATT	2 cut(s)	336, 495
Mly113I	GGCGCC	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	269, 289
MroXI	GAANNNNTTC	1 cut(s)	484
MseI	TTAA	1 cut(s)	542
MspI	CCGG	2 cut(s)	64, 121
MspR9I	CCNGG	2 cut(s)	49, 586
MvaI	CCWGG	2 cut(s)	49, 586
MvnI	CGCG	2 cut(s)	227, 367
MwoI	GCNNNNNNNGC	4 cut(s)	179, 401, 646, 669
NarI	GGCGCC	1 cut(s)	118
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	3 cut(s)	253, 627, 757
NlaIII	CATG	3 cut(s)	356, 477, 697
NmeAIII	GCCGAG	2 cut(s)	208, 753
PciSI	GCTCTTC	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	484
PfeI	GAWTC	3 cut(s)	28, 470, 852
PflFI	GACNNNGTC	1 cut(s)	345
PflMI	CCANNNNNTGG	2 cut(s)	202, 239
PfoI	TCCNGGA	1 cut(s)	47
PleI	GAGTC	1 cut(s)	410
PluTI	GGCGCC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	642
Psp1406I	AACGTT	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	47, 584
PspGI	CCWGG	2 cut(s)	47, 584
PspOMI	GGGCCC	1 cut(s)	191
PspPI	GGNCC	7 cut(s)	73, 191, 192, 218, 242, 588, 618
PsuI	RGATCY	1 cut(s)	627
PsyI	GACNNNGTC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	542
Sau3AI	GATC	3 cut(s)	253, 627, 757
Sau96I	GGNCC	7 cut(s)	73, 191, 192, 218, 242, 588, 618
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	49, 586
SduI	GDGCHC	2 cut(s)	195, 642
SfaNI	GCATC	7 cut(s)	4, 134, 413, 426, 529, 568, 784
SfoI	GGCGCC	1 cut(s)	119
SinI	GGWCC	5 cut(s)	73, 218, 242, 588, 618
Sse9I	AATT	2 cut(s)	336, 495
SsiI	CCGC	4 cut(s)	227, 269, 367, 739
SspDI	GGCGCC	1 cut(s)	117
SspMI	CTAG	2 cut(s)	293, 859
SstI	GAGCTC	1 cut(s)	642
StyD4I	CCNGG	2 cut(s)	47, 584
StyI	CCWWGG	2 cut(s)	761, 846
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	6 cut(s)	31, 169, 313, 340, 465, 723
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	2 cut(s)	336, 495
TfiI	GAWTC	3 cut(s)	28, 470, 852
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	3 cut(s)	86, 139, 692
Tth111I	GACNNNGTC	1 cut(s)	345
Van91I	CCANNNNNTGG	2 cut(s)	202, 239
VpaK11BI	GGWCC	5 cut(s)	73, 218, 242, 588, 618
XapI	RAATTY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	698
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	2 cut(s)	293, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.