Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023243.1

Orthogroup ID

OG0016963

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2502

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggatacttctcccagctacttcgaccccgaaaacctcaccaccagagagcaatttcgtcgctacgggaaaaggcacccgaattcgagcatttcgccccaccgagagaattcggcttcctccaggctaccctatgatggccagagcaatatccacagccctactaatgctgcacttcttctggaaaatattaaacaagaatttgaaagcactcctgcaaagactcgttccgtctcgaaaaggcggtccttgtttgatgttaccgaggtggatgatagcgctgaggcagtgcggtattcgttgaagctttgcaagcatgaggaggactcgctggctgatgatggagatacgacttttgctctatttgcatctctacttgactctgctcttcaagggttgatgcctttttctgaactgatactaagactcgaagaatcatgcagaaatgtttcagagtcaattatgtatggttccaacatacggcatcggattgtagaagataagttgatgaggcagaaggctcaactcctgcttgatgaggctgcttcctggtccctcctctggtacctttttggaaaagggaccgaagagacccctaaagaacttatcttgtttccctcaacatcacatttggaggcttgccagtttgttgcggacgatcttacagcacagttatgcttacgaattgttcaatggctagaaggcttgacttccaaagcacttgatctggaaagaaaggtgcgagggtctcacgttggtgcctgtctcccaagctctggaatttggttccatactcaacgctatcttaagaaaggaacatccagtgcaaatactgttcatcacttggattttgatgcctcgacacgagaacaggctcatctactacctgatgacaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

299

Amino Acids

33.82

Weight (kDa)

5.79

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016963)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09660 pycom17g14180
rosa_laevigata	RLG00000001874 RLG00000027916
rosa_multiflora	Rmu_co8207192.1_g000001 Rmu_sc0023243.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151190 Rroxscaffold_3G00232580
rosa_rugosa	Rorug01G0317100
rosa_samantha	Rh3BG172100 Rh7AG386600 Rh7AG395400 Rh7CG405900 Rh7CG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	564
AccB1I	GGYRCC	3 cut(s)	75, 564, 758
AccB7I	CCANNNNNTGG	1 cut(s)	776
AciI	CCGC	3 cut(s)	244, 292, 653
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	4 cut(s)	82, 109, 200, 780
AfaI	GTAC	1 cut(s)	566
AfeI	AGCGCT	1 cut(s)	280
AfiI	CCNNNNNNNGG	4 cut(s)	137, 480, 561, 776
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	4 cut(s)	206, 304, 392, 692
AjnI	CCWGG	2 cut(s)	122, 548
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	3 cut(s)	18, 307, 774
AluI	AGCT	3 cut(s)	18, 307, 774
Alw26I	GTCTC	4 cut(s)	238, 584, 753, 770
Aor51HI	AGCGCT	1 cut(s)	280
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	170, 542
ApoI	RAATTY	4 cut(s)	82, 109, 200, 780
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
Asp700I	GAANNNNTTC	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	246, 552, 582
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	3 cut(s)	246, 552, 582
BalI	TGGCCA	1 cut(s)	141
BanI	GGYRCC	3 cut(s)	75, 564, 758
BauI	CACGAG	1 cut(s)	864
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	157, 529
BccI	CCATC	2 cut(s)	131, 335
BceAI	ACGGC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	2 cut(s)	124, 550
BcoDI	GTCTC	4 cut(s)	238, 584, 753, 770
BfaI	CTAG	1 cut(s)	698
BfoI	RGCGCY	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	806
BisI	GCNGC	2 cut(s)	171, 543
BlsI	GCNGC	2 cut(s)	172, 544
Bme1390I	CCNGG	2 cut(s)	124, 550
Bme18I	GGWCC	3 cut(s)	246, 552, 582
BmgT120I	GGNCC	3 cut(s)	246, 552, 582
BmiI	GGNNCC	7 cut(s)	77, 472, 554, 566, 583, 760, 788
BmrFI	CCNGG	2 cut(s)	124, 550
BmsI	GCATC	4 cut(s)	377, 390, 493, 844
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	282
BsaI	GGTCTC	2 cut(s)	584, 753
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 480, 561, 776
Bse1I	ACTGG	2 cut(s)	643, 822
BseBI	CCWGG	2 cut(s)	124, 550
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	277, 818
BseLI	CCNNNNNNNGG	4 cut(s)	137, 480, 561, 776
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	643, 822
BseRI	GAGGAG	2 cut(s)	335, 548
BseXI	GCAGC	2 cut(s)	157, 529
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	3 cut(s)	75, 564, 758
BslFI	GGGAC	2 cut(s)	538, 595
BslI	CCNNNNNNNGG	4 cut(s)	137, 480, 561, 776
BsmAI	GTCTC	4 cut(s)	238, 584, 753, 770
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	538, 595
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	2 cut(s)	584, 753
Bsp143I	GATC	2 cut(s)	658, 724
BspACI	CCGC	3 cut(s)	244, 292, 653
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	7 cut(s)	77, 472, 554, 566, 583, 760, 788
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	3 cut(s)	75, 564, 758
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	2 cut(s)	584, 753
BsrI	ACTGG	2 cut(s)	643, 822
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	658, 724
BssSI	CACGAG	1 cut(s)	864
Bst2BI	CACGAG	1 cut(s)	864
Bst2UI	CCWGG	2 cut(s)	124, 550
Bst4CI	ACNGT	2 cut(s)	672, 835
Bst6I	CTCTTC	2 cut(s)	393, 582
BstAFI	CTTAAG	1 cut(s)	806
BstC8I	GCNNGC	3 cut(s)	314, 333, 640
BstDEI	CTNAG	2 cut(s)	282, 422
BstF5I	GGATG	2 cut(s)	277, 818
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	2 cut(s)	661, 727
BstMAI	GTCTC	4 cut(s)	238, 584, 753, 770
BstMBI	GATC	2 cut(s)	658, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 365
BstNI	CCWGG	2 cut(s)	124, 550
BstSCI	CCNGG	2 cut(s)	122, 548
BstV1I	GCAGC	2 cut(s)	157, 529
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	277, 818
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	294, 829
Cac8I	GCNNGC	3 cut(s)	314, 333, 640
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	3 cut(s)	246, 552, 582
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	2 cut(s)	317, 438
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	282, 422
DpnI	GATC	2 cut(s)	660, 726
DpnII	GATC	2 cut(s)	658, 724
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	393, 582
EarI	CTCTTC	2 cut(s)	393, 582
Eco31I	GGTCTC	2 cut(s)	584, 753
Eco47I	GGWCC	3 cut(s)	246, 552, 582
Eco47III	AGCGCT	1 cut(s)	280
EcoRI	GAATTC	2 cut(s)	82, 109
EcoRII	CCWGG	2 cut(s)	122, 548
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	2 cut(s)	320, 441
FaiI	YATR	8 cut(s)	135, 318, 439, 464, 468, 479, 676, 792
FaqI	GGGAC	2 cut(s)	538, 595
FatI	CATG	2 cut(s)	316, 437
Fnu4HI	GCNGC	2 cut(s)	171, 543
FokI	GGATG	2 cut(s)	284, 805
Fsp4HI	GCNGC	2 cut(s)	171, 543
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	2 cut(s)	171, 543
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	2 cut(s)	320, 441
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	6 cut(s)	223, 326, 380, 426, 434, 455
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	412, 454, 489
Hpy188III	TCNNGA	4 cut(s)	182, 235, 728, 777
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	511, 695
HpyCH4III	ACNGT	2 cut(s)	672, 835
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	6 cut(s)	173, 218, 312, 368, 441, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 365
HpyF3I	CTNAG	2 cut(s)	282, 422
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	2 cut(s)	320, 441
HspAI	GCGC	1 cut(s)	279
KpnI	GGTACC	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	658, 724
LguI	GCTCTTC	1 cut(s)	393
Lsp1109I	GCAGC	2 cut(s)	157, 529
LweI	GCATC	4 cut(s)	377, 390, 493, 844
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	660, 726
MboI	GATC	2 cut(s)	658, 724
MboII	GAAGA	5 cut(s)	170, 380, 443, 509, 599
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	7 cut(s)	53, 82, 109, 200, 459, 684, 780
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	5 cut(s)	217, 320, 374, 420, 464
MmeI	TCCRAC	1 cut(s)	498
Mox20I	TGGCCA	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	2 cut(s)	192, 807
MslI	CAYNNNNRTG	2 cut(s)	673, 756
Msp20I	TGGCCA	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	806
MspR9I	CCNGG	2 cut(s)	124, 550
MvaI	CCWGG	2 cut(s)	124, 550
MwoI	GCNNNNNNNGC	2 cut(s)	313, 365
NdeII	GATC	2 cut(s)	658, 724
NlaIII	CATG	2 cut(s)	320, 441
NlaIV	GGNNCC	7 cut(s)	77, 472, 554, 566, 583, 760, 788
OliI	CACNNNNGTG	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	2 cut(s)	172, 544
PleI	GAGTC	5 cut(s)	217, 320, 374, 420, 463
PpsI	GAGTC	5 cut(s)	217, 320, 374, 420, 463
Psp6I	CCWGG	2 cut(s)	122, 548
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	122, 548
PspN4I	GGNNCC	7 cut(s)	77, 472, 554, 566, 583, 760, 788
PspPI	GGNCC	3 cut(s)	246, 552, 582
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	2 cut(s)	673, 756
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	192, 807
SatI	GCNGC	2 cut(s)	171, 543
Sau3AI	GATC	2 cut(s)	658, 724
Sau96I	GGNCC	3 cut(s)	246, 552, 582
SchI	GAGTC	5 cut(s)	217, 320, 374, 420, 464
ScrFI	CCNGG	2 cut(s)	124, 550
SetI	ASST	9 cut(s)	20, 39, 270, 309, 570, 741, 756, 776, 889
SfaNI	GCATC	4 cut(s)	377, 390, 493, 844
SinI	GGWCC	3 cut(s)	246, 552, 582
SmiMI	CAYNNNNRTG	2 cut(s)	673, 756
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	7 cut(s)	53, 82, 109, 200, 459, 684, 780
SsiI	CCGC	3 cut(s)	244, 292, 653
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	2 cut(s)	122, 548
TaaI	ACNGT	2 cut(s)	672, 835
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	5 cut(s)	24, 86, 236, 429, 860
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	7 cut(s)	53, 82, 109, 200, 459, 684, 780
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	192, 807
Tru9I	TTAA	2 cut(s)	192, 807
TscAI	CASTG	2 cut(s)	294, 829
TseI	GCWGC	2 cut(s)	170, 542
TspDTI	ATGAA	1 cut(s)	827
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	294, 829
Van91I	CCANNNNNTGG	1 cut(s)	776
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	3 cut(s)	246, 552, 582
XapI	RAATTY	4 cut(s)	82, 109, 200, 780
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.