Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8207192.1

Orthogroup ID

OG0016963

Physical Location & Seq

Genomic Coordinates Forward (+)

87 .. 717

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8207192.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggatacttctcccagctacttcgaccccgaaaacctcaccaccagagagcaatttcgtcgctacgggaaaaggcacccgaattcgagcatttcgccccaccgagagaattcggcttcctccaggccaccctatgatggccagagcaatatccacagccctactaatgctgcacttcttctggaaaatattaaacaagaatttgaaagcactcctgcaaagactcgttccgtctcgaaaaggcggtccttgtttgatgttaccgaggtggatgatagcgctgaggcagtgcggtattcgttgaagctttgcaagcatgaggaggactcgctggctgatgatggagatacgacttttgctctatttgcatctctacttgactctgctcttcaaggtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

133

Amino Acids

14.94

Weight (kDa)

5.33

Isoelectric Point (pI)

75.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016963)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09660 pycom17g14180
rosa_laevigata	RLG00000001874 RLG00000027916
rosa_multiflora	Rmu_co8207192.1_g000001 Rmu_sc0023243.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151190 Rroxscaffold_3G00232580
rosa_rugosa	Rorug01G0317100
rosa_samantha	Rh3BG172100 Rh7AG386600 Rh7AG395400 Rh7CG405900 Rh7CG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AciI	CCGC	2 cut(s)	244, 292
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	82, 109, 200
AfeI	AGCGCT	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	206, 304, 392
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	18, 307
AluI	AGCT	2 cut(s)	18, 307
Alw26I	GTCTC	1 cut(s)	238
Aor51HI	AGCGCT	1 cut(s)	280
AoxI	GGCC	2 cut(s)	125, 139
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	3 cut(s)	82, 109, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	131, 335
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	127, 141
BshNI	GGYRCC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	127, 141
BspACI	CCGC	2 cut(s)	244, 292
BspANI	GGCC	2 cut(s)	127, 141
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	314, 333
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 365
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	127, 141
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	314, 333
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	7 cut(s)	18, 116, 127, 141, 159, 307, 335
CviKI_1	RGCY	7 cut(s)	18, 116, 127, 141, 159, 307, 335
DdeI	CTNAG	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	246
Eco47III	AGCGCT	1 cut(s)	280
EcoRI	GAATTC	2 cut(s)	82, 109
EcoRII	CCWGG	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	1 cut(s)	320
FaiI	YATR	2 cut(s)	135, 318
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	171
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	127, 141
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	223, 326, 380
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	401
Hpy188III	TCNNGA	2 cut(s)	182, 235
Hpy99I	CGWCG	1 cut(s)	63
HpyCH4V	TGCA	4 cut(s)	173, 218, 312, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 365
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	279
LguI	GCTCTTC	1 cut(s)	393
LpnPI	CCDG	8 cut(s)	28, 58, 109, 136, 155, 167, 228, 317
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	170, 380
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	4 cut(s)	53, 82, 109, 200
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	3 cut(s)	217, 320, 374
MnlI	CCTC	6 cut(s)	47, 130, 259, 277, 313, 316
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	313, 365
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	3 cut(s)	217, 320, 374
PpsI	GAGTC	3 cut(s)	217, 320, 374
Psp6I	CCWGG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	3 cut(s)	217, 320, 374
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	5 cut(s)	20, 39, 270, 309, 397
SfaNI	GCATC	1 cut(s)	377
SinI	GGWCC	1 cut(s)	246
Sse9I	AATT	4 cut(s)	53, 82, 109, 200
SsiI	CCGC	2 cut(s)	244, 292
SspI	AATATT	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	122
TaqI	TCGA	3 cut(s)	24, 86, 236
TasI	AATT	4 cut(s)	53, 82, 109, 200
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	3 cut(s)	82, 109, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.