Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016963

Physical Location & Seq

Genomic Coordinates Forward (+)

16784196 .. 16784868

Gene Structure 673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATCGATGGCCAGAACAATATCCACAGCCCTACTACTGCTGCATTTCTTCTAGAAAATATTAAACAAGAAGTTGAAAGCACTCCTACAAATTCTCATTCCGTCTCGAAAAGGCGGTCTTCGTTTGATGTTACTGAGGTGGATGATAGCACTGAGGCAGTCCGATATTCGTTGAAGGTTTGCAAGCATGAGGAGGACATGCAGGCTGATGATGGAGATACAACTTTTGCTTTATTTGCATCTCTACTTGACTCTGCTCTTCAAGTGTTGGTGCCTTTTCCTGACCTGATACTAAGACTCGAAGAATCATGCAGAAATGTTTCAGAGTCAATTATGTATGGTTTCAACATGCGGCATCGGATTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAGCTCGCGCTTGATGAGGATGCTTCCTGGTCCCTCCTTGTGGTACCTCTTTGGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

152

Amino Acids

17.17

Weight (kDa)

4.85

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016963)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09660 pycom17g14180
rosa_laevigata	RLG00000001874 RLG00000027916
rosa_multiflora	Rmu_co8207192.1_g000001 Rmu_sc0023243.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151190 Rroxscaffold_3G00232580
rosa_rugosa	Rorug01G0317100
rosa_samantha	Rh3BG172100 Rh7AG386600 Rh7AG395400 Rh7CG405900 Rh7CG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	436
AccB1I	GGYRCC	2 cut(s)	271, 436
AccII	CGCG	1 cut(s)	401
AciI	CCGC	2 cut(s)	115, 352
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	77, 175, 263, 346
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
Asp700I	GAANNNNTTC	1 cut(s)	319
Asp718I	GGTACC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	12
BanI	GGYRCC	2 cut(s)	271, 436
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	2, 206
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	2 cut(s)	42, 353
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	2 cut(s)	43, 354
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	3 cut(s)	273, 425, 438
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	3 cut(s)	248, 364, 403
BpiI	GAAGAC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	6
BseGI	GGATG	2 cut(s)	148, 418
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	3 cut(s)	126, 144, 407
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	12
BshNI	GGYRCC	2 cut(s)	271, 436
BshVI	ATCGAT	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	2 cut(s)	115, 352
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	3 cut(s)	127, 145, 406
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	3 cut(s)	273, 425, 438
BspQI	GCTCTTC	1 cut(s)	264
BspT107I	GGYRCC	2 cut(s)	271, 436
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	185, 204, 399
BstDEI	CTNAG	4 cut(s)	135, 153, 293, 393
BstF5I	GGATG	2 cut(s)	148, 418
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 398
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	2 cut(s)	202, 352
BstSCI	CCNGG	1 cut(s)	419
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	12
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	148, 418
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	185, 204, 399
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	423
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	4 cut(s)	188, 199, 309, 349
CviJI	RGCY	5 cut(s)	12, 30, 206, 392, 397
CviKI_1	RGCY	5 cut(s)	12, 30, 206, 392, 397
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	4 cut(s)	135, 153, 293, 393
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	4 cut(s)	191, 202, 312, 352
FaiI	YATR	6 cut(s)	189, 200, 310, 335, 339, 350
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	187, 198, 308, 348
Fnu4HI	GCNGC	2 cut(s)	42, 353
FokI	GGATG	2 cut(s)	155, 425
Fsp4HI	GCNGC	2 cut(s)	42, 353
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	2 cut(s)	42, 353
HaeIII	GGCC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	4 cut(s)	191, 202, 312, 352
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	4 cut(s)	251, 297, 305, 326
Hpy188I	TCNGA	3 cut(s)	164, 325, 360
Hpy188III	TCNNGA	3 cut(s)	53, 106, 281
HpyAV	CCTTC	2 cut(s)	169, 382
HpyCH4V	TGCA	5 cut(s)	44, 183, 202, 239, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 398
HpyF3I	CTNAG	4 cut(s)	135, 153, 293, 393
Hsp92II	CATG	4 cut(s)	191, 202, 312, 352
HspAI	GCGC	1 cut(s)	401
KpnI	GGTACC	1 cut(s)	440
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	264
LpnPI	CCDG	6 cut(s)	26, 188, 294, 299, 406, 433
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	3 cut(s)	248, 364, 403
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	41, 111, 251, 314, 380
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	2 cut(s)	91, 330
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	3 cut(s)	245, 291, 335
MnlI	CCTC	8 cut(s)	130, 148, 184, 187, 375, 403, 437, 450
Mox20I	TGGCCA	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	236, 398
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	191, 202, 312, 352
NlaIV	GGNNCC	3 cut(s)	273, 425, 438
NspI	RCATGY	2 cut(s)	202, 352
PciSI	GCTCTTC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	43, 354
PleI	GAGTC	3 cut(s)	245, 291, 334
PpsI	GAGTC	3 cut(s)	245, 291, 334
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	273, 425, 438
PspPI	GGNCC	1 cut(s)	423
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	42, 353
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	3 cut(s)	245, 291, 335
ScrFI	CCNGG	1 cut(s)	421
SetI	ASST	6 cut(s)	141, 180, 288, 399, 442, 455
SfaNI	GCATC	3 cut(s)	248, 364, 403
SinI	GGWCC	1 cut(s)	423
Sse9I	AATT	2 cut(s)	91, 330
SsiI	CCGC	2 cut(s)	115, 352
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	419
TaqI	TCGA	3 cut(s)	6, 107, 300
TasI	AATT	2 cut(s)	91, 330
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	2 cut(s)	202, 352
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.