Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016963

Physical Location & Seq

Genomic Coordinates Forward (+)

22318084 .. 22318809

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGATGATAGCGCTGAGGCAGTTCGATATTCGTTGAAGTTTTGCAAGCATGAGGACTCGCGGGATGATGATGGAGATATCACTTTTGCTTTATTTGCATCTCTACTTGACTCTGCTCTTCAAGTTGTCTATATGGATAAAGTTTCTTGGTATATTTTGTTTTCGGGGTTGATGCCTTTTCCTGACCTGATATTAAGACTCGAAGAATCATGCAGAAATGTTTTAGAGTCAATTATGTATGGTTCCAACATATGGCATCAGATTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAGCTCTTGCTTGATGAGGCTGCTTCCTGGTCCCTCATATGGTACCTCTTTGGGAAAGGGACCGAAGAGATCCCTAAAGAGCTCATCTTGGTAATTCATTTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

134

Amino Acids

15.44

Weight (kDa)

4.58

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016963)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09660 pycom17g14180
rosa_laevigata	RLG00000001874 RLG00000027916
rosa_multiflora	Rmu_co8207192.1_g000001 Rmu_sc0023243.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151190 Rroxscaffold_3G00232580
rosa_rugosa	Rorug01G0317100
rosa_samantha	Rh3BG172100 Rh7AG386600 Rh7AG395400 Rh7CG405900 Rh7CG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	358
AfaI	GTAC	1 cut(s)	338
AfeI	AGCGCT	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	252, 333
AgsI	TTSAA	2 cut(s)	37, 122
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	298, 376
AluI	AGCT	2 cut(s)	298, 376
Alw21I	GWGCWC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	358
Aor51HI	AGCGCT	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	314
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	324, 354
AvaII	GGWCC	2 cut(s)	324, 354
BanI	GGYRCC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	15
BisI	GCNGC	1 cut(s)	315
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	2 cut(s)	324, 354
BmgT120I	GGNCC	2 cut(s)	324, 354
BmiI	GGNNCC	4 cut(s)	244, 326, 338, 355
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	107, 162, 265
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 333
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	10, 70
BseLI	CCNNNNNNNGG	2 cut(s)	252, 333
BseMII	CTCAG	2 cut(s)	6, 308
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	310, 367
BslI	CCNNNNNNNGG	2 cut(s)	252, 333
BsmFI	GGGAC	2 cut(s)	310, 367
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	363
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	7, 307
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	4 cut(s)	244, 326, 338, 355
BspPI	GGATC	1 cut(s)	358
BspQI	GCTCTTC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	336
BssMI	GATC	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	123, 354
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	15, 294
BstF5I	GGATG	2 cut(s)	10, 70
BstFNI	CGCG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	320
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	10, 70
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	324, 354
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	50, 210
CviJI	RGCY	4 cut(s)	293, 298, 314, 376
CviKI_1	RGCY	4 cut(s)	293, 298, 314, 376
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	15, 294
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	123, 354
EarI	CTCTTC	2 cut(s)	123, 354
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	324, 354
Eco47III	AGCGCT	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	378
FaeI	CATG	2 cut(s)	53, 213
FaqI	GGGAC	2 cut(s)	310, 367
FatI	CATG	2 cut(s)	49, 209
FauI	CCCGC	1 cut(s)	54
FauNDI	CATATG	2 cut(s)	251, 332
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	2 cut(s)	17, 77
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	315
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	15
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	53, 213
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	5 cut(s)	56, 110, 198, 206, 227
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	45, 98, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	15, 294
Hsp92II	CATG	2 cut(s)	53, 213
HspAI	GCGC	1 cut(s)	12
KpnI	GGTACC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	363
LguI	GCTCTTC	1 cut(s)	123
LpnPI	CCDG	4 cut(s)	195, 200, 307, 334
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	3 cut(s)	107, 162, 265
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	4 cut(s)	110, 215, 281, 371
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	231, 387
MlyI	GAGTC	4 cut(s)	50, 104, 192, 236
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	10, 46, 276, 304, 338, 350
MseI	TTAA	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeI	CATATG	2 cut(s)	251, 332
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	53, 213
NlaIV	GGNNCC	4 cut(s)	244, 326, 338, 355
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	4 cut(s)	50, 104, 192, 235
PpsI	GAGTC	4 cut(s)	50, 104, 192, 235
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	4 cut(s)	244, 326, 338, 355
PspPI	GGNCC	2 cut(s)	324, 354
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	2 cut(s)	324, 354
SchI	GAGTC	4 cut(s)	50, 104, 192, 236
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	4 cut(s)	189, 300, 342, 378
SfaNI	GCATC	3 cut(s)	107, 162, 265
SinI	GGWCC	2 cut(s)	324, 354
Sse9I	AATT	2 cut(s)	231, 387
SsiI	CCGC	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	320
TaqI	TCGA	2 cut(s)	25, 201
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	2 cut(s)	231, 387
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	324, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.