Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009310

Physical Location & Seq

Genomic Coordinates Forward (+)

7899745 .. 7902647

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGTTGCAGCTGCTCGATGGATTGCAAAGCTTGCAAAACCTTGCCTACTAAAAGCACTTGAAGAATATCCTAACTATGAACTTAAGATTGTAGGGCATTCTTTGGGTGGAGGCACTGCAGCACTTCTAACATATATATTGCGAGAGCAGAAAGAACTTTCAACAACCACCTGTGTGACATTTGCTCCAGCTGCCTGTATGACGTGGGAATTGGCAGAATCAGGAGGTCGTTTTATTACATCCGTTGTCAATGGAGCTGACTTAGTGCCCACGTTCTCTGCTGCGTCAGTGGATGATTTGCGTGCTGAGGTTACGGCGTCTGCTTGGATAAATGACTTGAGAAATCAGATTGAGCAGACAAGAATTCTGAGCACTGTCTATCGTTCTGCTTCAGCTTTGGGATCACGGCTTCCCTCCATTGCCAGTGCAAAAGCAAAAGTTGCTGGGGCAGGGGCGATTCTACGCCCTGTTTCCAATGGTACACAGGTTGTTATGAGAAGAGCCCAGAGCATGGCTCAGGCAGCATGGACTCGTCCTTCCCTTGGCTTGTCATCATGGTCGTGCATGGCTCCTCGTCACCGAGCCTCAGCTGCTCATTCAAACTCAATTGATGAAGGAAGTTCTGGAGGATCCTATGGTGGCAACACAGAGACTTCTGACCCTCTTCTTACACCCCCCAAGAGAACCACAAGCTCAACTGCCATTGAAACCATTGACCTTCCTGTATCTTCATCTGTAGGAATGGAATGGACATCAGAGATTGATTGTTCTTATTCTGATAGAATGCATCAAGATGCTGATGGTGATGTCGGTGATGAGCATGAGGGGCTCACAGACCATGATAGACATGAAGACCGGATGACTGAAGTTGAATTGTGGCAACAACTTGAGCATGAGCTTTATGATAGAACAGAAGGTGAGGATGGCGATGTGGTAAATGAAATAAGGAATGCAGAAAATGAAATAAGGGAAGAAGAAGAAGCCGCAATTGCAGAGGCAAGTGATGGTCGCCCAGAGAGCTCTGCTCCTGACATGAAGGAAGCACATAGATTTTTTCCTGCAGGGAAAATCATGCATATTGTTACCGTTCACCATGGTGGTGCTGATAGTGAAAGCGGTGGCCCTAGCTTGAGTGGATCGGGCAATGAACAGCCAGAAGAGACTAGGGTTGGTATTTTCCTTACTTCAAGATCTCTGTACAGTAAGCTGAGGTTGTCACAAACCATGATTAGCGATCACTTCATGCCGGTATATAGAAGGCAGATTGAGAAGTTAATTAAAGAACTTGAGGAAGAAATGGCTTCCAACGGAGAGGTGGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

442

Amino Acids

47.91

Weight (kDa)

4.94

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14075 AT3G14075 AT3G14075
fragaria_vesca	FvH4_6g35030
malus_domestica	MD09G1180000.v1.1 MD17G1165600.v1.1
prunus_persica	Prupe.3G038800_v2.0.a1 Prupe.3G038800_v2.0.a1
pyrus_communis	pycom09g09770 pycom17g15830
rosa_chinensis	RchiOBHm_Chr2g0146191
rosa_laevigata	RLG00000020185
rosa_multiflora	Rmu_sc0010454.1_g000013
rosa_roxburghii	Rroxscaffold_152G00434890 Rroxscaffold_2G00100260
rosa_rugosa	Rorug02G0393700 Rorug02G0393700
rosa_samantha	Rh2AG449400 Rh2BG461900 Rh2CG436300 Rh2DG471100
rosa_wichuraiana	Rw2G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	511
AciI	CCGC	2 cut(s)	984, 1116
AclWI	GGATC	4 cut(s)	409, 624, 637, 1144
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	375, 885
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	481, 1199
AfiI	CCNNNNNNNGG	2 cut(s)	511, 542
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	6 cut(s)	62, 162, 600, 707, 872, 1188
AjiI	CACGTC	1 cut(s)	204
AleI	CACNNNNGTG	2 cut(s)	173, 1095
Alw21I	GWGCWC	2 cut(s)	374, 1022
Alw26I	GTCTC	2 cut(s)	644, 1154
AlwI	GGATC	4 cut(s)	409, 624, 637, 1144
AoxI	GGCC	1 cut(s)	1120
ApeKI	GCWGC	7 cut(s)	8, 11, 119, 191, 281, 521, 590
ApoI	RAATTY	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	1121
AsuHPI	GGTGA	5 cut(s)	569, 815, 824, 929, 1082
BaeGI	GKGCMC	1 cut(s)	270
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BamHI	GGATCC	1 cut(s)	629
BanII	GRGCYC	3 cut(s)	505, 831, 1022
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	374, 1022
BbvCI	CCTCAGC	3 cut(s)	306, 586, 1208
BbvI	GCAGC	6 cut(s)	20, 131, 178, 268, 533, 577
BccI	CCATC	4 cut(s)	12, 794, 917, 998
BceAI	ACGGC	2 cut(s)	330, 422
BcoDI	GTCTC	2 cut(s)	644, 1154
BfaI	CTAG	2 cut(s)	1125, 1164
BfmI	CTRYAG	3 cut(s)	117, 735, 1059
BfrI	CTTAAG	1 cut(s)	83
BglII	AGATCT	1 cut(s)	1190
BisI	GCNGC	8 cut(s)	9, 12, 120, 192, 282, 522, 591, 984
BlsI	GCNGC	8 cut(s)	10, 13, 121, 193, 283, 523, 592, 985
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	1121
BmiI	GGNNCC	2 cut(s)	570, 631
BmsI	GCATC	2 cut(s)	784, 796
BpiI	GAAGAC	1 cut(s)	858
BplI	GAGNNNNNCTC	4 cut(s)	499, 531, 1009, 1041
BpmI	CTGGAG	2 cut(s)	171, 645
Bpu10I	CCTNAGC	4 cut(s)	306, 516, 586, 1208
BpuEI	CTTGAG	4 cut(s)	358, 908, 1150, 1307
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	541, 1093
BsaWI	WCCGGW	1 cut(s)	855
BsaXI	ACNNNNNCTCC	3 cut(s)	169, 199, 1302
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 542
Bse118I	RCCGGY	1 cut(s)	1246
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	2 cut(s)	417, 1150
BseDI	CCNNGG	2 cut(s)	541, 1093
BseGI	GGATG	4 cut(s)	239, 298, 864, 928
BseLI	CCNNNNNNNGG	2 cut(s)	511, 542
BseMI	GCAATG	2 cut(s)	417, 1150
BseMII	CTCAG	5 cut(s)	297, 359, 530, 600, 1199
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	6 cut(s)	20, 131, 178, 268, 533, 577
BseYI	CCCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	1122
BsiHKAI	GWGCWC	2 cut(s)	374, 1022
BsiSI	CCGG	2 cut(s)	856, 1247
BslI	CCNNNNNNNGG	2 cut(s)	511, 542
BsmAI	GTCTC	2 cut(s)	644, 1154
BsmI	GAATGC	3 cut(s)	97, 789, 955
BsnI	GGCC	1 cut(s)	1122
Bsp1286I	GDGCHC	5 cut(s)	270, 374, 505, 831, 1022
Bsp1407I	TGTACA	1 cut(s)	1197
Bsp143I	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
Bsp19I	CCATGG	1 cut(s)	1093
BspACI	CCGC	2 cut(s)	984, 1116
BspANI	GGCC	1 cut(s)	1122
BspCNI	CTCAG	5 cut(s)	298, 360, 529, 599, 1200
BspLI	GGNNCC	2 cut(s)	570, 631
BspMAI	CTGCAG	2 cut(s)	121, 1063
BspPI	GGATC	4 cut(s)	409, 624, 637, 1144
BspQI	GCTCTTC	1 cut(s)	493
BspTI	CTTAAG	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	417, 1150
BsrFI	RCCGGY	1 cut(s)	1246
BsrGI	TGTACA	1 cut(s)	1197
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	1246
BssECI	CCNNGG	2 cut(s)	541, 1093
BssMI	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	2 cut(s)	541, 1093
Bst4CI	ACNGT	3 cut(s)	376, 1087, 1202
Bst6I	CTCTTC	3 cut(s)	493, 669, 1152
BstACI	GRCGYC	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	83
BstAPI	GCANNNNNTGC	2 cut(s)	32, 440
BstAUI	TGTACA	1 cut(s)	1197
BstC8I	GCNNGC	2 cut(s)	33, 303
BstDEI	CTNAG	6 cut(s)	262, 306, 368, 516, 586, 1208
BstDSI	CCRYGG	1 cut(s)	1093
BstF5I	GGATG	4 cut(s)	239, 298, 864, 928
BstKTI	GATC	5 cut(s)	404, 632, 1139, 1193, 1237
BstMAI	GTCTC	2 cut(s)	644, 1154
BstMBI	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
BstMWI	GCNNNNNNNGC	8 cut(s)	32, 191, 440, 521, 590, 826, 989, 1017
BstSFI	CTRYAG	3 cut(s)	117, 735, 1059
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	6 cut(s)	20, 131, 178, 268, 533, 577
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	2 cut(s)	629, 1190
BstYI	RGATCY	2 cut(s)	629, 1190
BsuRI	GGCC	1 cut(s)	1122
BtgI	CCRYGG	1 cut(s)	1093
BtgZI	GCGATG	1 cut(s)	942
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	239, 298, 864, 928
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	4 cut(s)	114, 294, 372, 430
Cac8I	GCNNGC	2 cut(s)	33, 303
Cfr10I	RCCGGY	1 cut(s)	1246
Cfr13I	GGNCC	1 cut(s)	1121
CseI	GACGC	2 cut(s)	273, 306
Csp6I	GTAC	2 cut(s)	480, 1198
CviQI	GTAC	2 cut(s)	480, 1198
DdeI	CTNAG	6 cut(s)	262, 306, 368, 516, 586, 1208
DpnI	GATC	5 cut(s)	403, 631, 1138, 1192, 1236
DpnII	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
Eam1104I	CTCTTC	3 cut(s)	493, 669, 1152
EarI	CTCTTC	3 cut(s)	493, 669, 1152
Ecl136II	GAGCTC	1 cut(s)	1020
Eco130I	CCWWGG	2 cut(s)	541, 1093
Eco24I	GRGCYC	3 cut(s)	505, 831, 1022
Eco53kI	GAGCTC	1 cut(s)	1020
Eco57I	CTGAAG	2 cut(s)	375, 885
EcoICRI	GAGCTC	1 cut(s)	1020
EcoRI	GAATTC	1 cut(s)	363
EcoT14I	CCWWGG	2 cut(s)	541, 1093
EcoT22I	ATGCAT	2 cut(s)	789, 1077
EcoT38I	GRGCYC	3 cut(s)	505, 831, 1022
ErhI	CCWWGG	2 cut(s)	541, 1093
Fnu4HI	GCNGC	8 cut(s)	9, 12, 120, 192, 282, 522, 591, 984
FokI	GGATG	4 cut(s)	226, 305, 871, 935
FriOI	GRGCYC	3 cut(s)	505, 831, 1022
Fsp4HI	GCNGC	8 cut(s)	9, 12, 120, 192, 282, 522, 591, 984
FspBI	CTAG	2 cut(s)	1125, 1164
GluI	GCNGC	8 cut(s)	9, 12, 120, 192, 282, 522, 591, 984
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	2 cut(s)	171, 645
HaeIII	GGCC	1 cut(s)	1122
HapII	CCGG	2 cut(s)	856, 1247
HgaI	GACGC	2 cut(s)	273, 306
Hin1I	GRCGYC	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	218, 457, 529
HpaII	CCGG	2 cut(s)	856, 1247
HphI	GGTGA	5 cut(s)	569, 815, 824, 929, 1082
Hpy166II	GTNNAC	2 cut(s)	482, 1090
Hpy188I	TCNGA	5 cut(s)	348, 369, 658, 757, 778
Hpy188III	TCNNGA	5 cut(s)	222, 624, 791, 1028, 1188
Hpy8I	GTNNAC	2 cut(s)	482, 1090
HpyAV	CCTTC	6 cut(s)	546, 608, 728, 908, 1030, 1251
HpyCH4III	ACNGT	3 cut(s)	376, 1087, 1202
HpyCH4IV	ACGT	2 cut(s)	203, 272
HpyF10VI	GCNNNNNNNGC	8 cut(s)	32, 191, 440, 521, 590, 826, 989, 1017
HpyF3I	CTNAG	6 cut(s)	262, 306, 368, 516, 586, 1208
HpySE526I	ACGT	2 cut(s)	203, 272
Hsp92I	GRCGYC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	4 cut(s)	190, 254, 574, 1030
Lsp1109I	GCAGC	6 cut(s)	20, 131, 178, 268, 533, 577
LweI	GCATC	2 cut(s)	784, 796
MaeI	CTAG	2 cut(s)	1125, 1164
MaeII	ACGT	2 cut(s)	203, 272
MaeIII	GTNAC	5 cut(s)	175, 310, 575, 1081, 1215
MalI	GATC	5 cut(s)	403, 631, 1138, 1192, 1236
MboI	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
MfeI	CAATTG	2 cut(s)	606, 987
MflI	RGATCY	2 cut(s)	629, 1190
MhlI	GDGCHC	5 cut(s)	270, 374, 505, 831, 1022
MluCI	AATT	6 cut(s)	209, 363, 606, 872, 987, 1275
MlyI	GAGTC	1 cut(s)	523
Mph1103I	ATGCAT	2 cut(s)	789, 1077
MseI	TTAA	3 cut(s)	84, 1274, 1278
MslI	CAYNNNNRTG	5 cut(s)	173, 559, 792, 1095, 1098
MspA1I	CMGCKG	3 cut(s)	11, 191, 590
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	2 cut(s)	856, 1247
MunI	CAATTG	2 cut(s)	606, 987
Mva1269I	GAATGC	3 cut(s)	97, 789, 955
MwoI	GCNNNNNNNGC	8 cut(s)	32, 191, 440, 521, 590, 826, 989, 1017
NcoI	CCATGG	1 cut(s)	1093
NdeII	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
NlaIV	GGNNCC	2 cut(s)	570, 631
NmuCI	GTSAC	3 cut(s)	175, 575, 1215
NsiI	ATGCAT	2 cut(s)	789, 1077
OliI	CACNNNNGTG	2 cut(s)	173, 1095
PacI	TTAATTAA	1 cut(s)	1278
PciSI	GCTCTTC	1 cut(s)	493
PctI	GAATGC	3 cut(s)	97, 789, 955
PfeI	GAWTC	2 cut(s)	218, 457
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	8 cut(s)	10, 13, 121, 193, 283, 523, 592, 985
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	1022
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	570, 631
PspPI	GGNCC	1 cut(s)	1121
PstI	CTGCAG	2 cut(s)	121, 1063
PsuI	RGATCY	2 cut(s)	629, 1190
PvuII	CAGCTG	3 cut(s)	11, 191, 590
RsaI	GTAC	2 cut(s)	481, 1199
RsaNI	GTAC	2 cut(s)	480, 1198
RseI	CAYNNNNRTG	5 cut(s)	173, 559, 792, 1095, 1098
SacI	GAGCTC	1 cut(s)	1022
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	3 cut(s)	84, 1274, 1278
SatI	GCNGC	8 cut(s)	9, 12, 120, 192, 282, 522, 591, 984
Sau3AI	GATC	5 cut(s)	401, 629, 1136, 1190, 1234
Sau96I	GGNCC	1 cut(s)	1121
SbfI	CCTGCAGG	1 cut(s)	1063
SchI	GAGTC	1 cut(s)	523
SdaI	CCTGCAGG	1 cut(s)	1063
SduI	GDGCHC	5 cut(s)	270, 374, 505, 831, 1022
SfaNI	GCATC	2 cut(s)	784, 796
SfcI	CTRYAG	3 cut(s)	117, 735, 1059
SmiMI	CAYNNNNRTG	5 cut(s)	173, 559, 792, 1095, 1098
SmlI	CTYRAG	5 cut(s)	83, 337, 887, 1129, 1286
SmoI	CTYRAG	5 cut(s)	83, 337, 887, 1129, 1286
Sse8387I	CCTGCAGG	1 cut(s)	1063
Sse9I	AATT	6 cut(s)	209, 363, 606, 872, 987, 1275
SsiI	CCGC	2 cut(s)	984, 1116
SspMI	CTAG	2 cut(s)	1125, 1164
SstI	GAGCTC	1 cut(s)	1022
StyI	CCWWGG	2 cut(s)	541, 1093
TaaI	ACNGT	3 cut(s)	376, 1087, 1202
TaiI	ACGT	2 cut(s)	206, 275
TaqI	TCGA	1 cut(s)	16
TasI	AATT	6 cut(s)	209, 363, 606, 872, 987, 1275
TatI	WGTACW	1 cut(s)	1197
TauI	GCSGC	1 cut(s)	986
TfiI	GAWTC	2 cut(s)	218, 457
Tru1I	TTAA	3 cut(s)	84, 1274, 1278
Tru9I	TTAA	3 cut(s)	84, 1274, 1278
TscAI	CASTG	4 cut(s)	121, 294, 379, 430
TseFI	GTSAC	3 cut(s)	175, 575, 1215
TseI	GCWGC	7 cut(s)	8, 11, 119, 191, 281, 521, 590
Tsp45I	GTSAC	3 cut(s)	175, 575, 1215
TspDTI	ATGAA	9 cut(s)	93, 627, 720, 864, 954, 975, 1049, 1161, 1231
TspGWI	ACGGA	2 cut(s)	232, 1323
TspRI	CASTG	4 cut(s)	121, 294, 379, 430
Van91I	CCANNNNNTGG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1312
XspI	CTAG	2 cut(s)	1125, 1164
Zsp2I	ATGCAT	2 cut(s)	789, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.