Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009310

Physical Location & Seq

Genomic Coordinates Reverse (-)

50423119 .. 50426791

Gene Structure 3673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0393700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTCTATGGTGCATTAGTATGGGACCCTTGGCTCATTGTTGTCCAAATTGTGTGCCTTCAATGTCTGTACTATCTCACTCTTGGATTGTTCTTGGCAATTCTTGTTGGGACTCGCGTGTCCCGAATGAGCCTTGTGTATTTCTTTGATTATGCTACCGTCACCATTTCCACTGTCACCGGGTGGTGCGTCATTGCTTCCTTTGCGCTCAGTGCACTTGCAAGCGCTGGATATCTACTGCTTCTGATTGAGAGGTCAAAAAAGTGCTTAGATTTTTCAGTCACCCTGTACATCGTCCATCTCTTTATCTGCATTGGTTATGGGGGTTGGCCTTCTTCAATAACATGGTGGGTTGTAAATGGTACTGGAATTGGAGTGATGGCTTTGTTAGGTGAATACCTCTGCATGAGACGTGAACTGCAGGAGATCAAGATCACTACAACACGATATCGCTCAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

154

Amino Acids

17.38

Weight (kDa)

8.55

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SYS1	PF09801	6 - 144	1.6e-46	Integral membrane protein S linking to the trans Golgi network

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14075 AT3G14075 AT3G14075
fragaria_vesca	FvH4_6g35030
malus_domestica	MD09G1180000.v1.1 MD17G1165600.v1.1
prunus_persica	Prupe.3G038800_v2.0.a1 Prupe.3G038800_v2.0.a1
pyrus_communis	pycom09g09770 pycom17g15830
rosa_chinensis	RchiOBHm_Chr2g0146191
rosa_laevigata	RLG00000020185
rosa_multiflora	Rmu_sc0010454.1_g000013
rosa_roxburghii	Rroxscaffold_152G00434890 Rroxscaffold_2G00100260
rosa_rugosa	Rorug02G0393700 Rorug02G0393700
rosa_samantha	Rh2AG449400 Rh2BG461900 Rh2CG436300 Rh2DG471100
rosa_wichuraiana	Rw2G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	118
AccII	CGCG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	71, 290, 364
AfeI	AGCGCT	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	62, 339
AjiI	CACGTC	1 cut(s)	413
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	403
Alw44I	GTGCAC	1 cut(s)	213
Aor51HI	AGCGCT	1 cut(s)	226
AoxI	GGCC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	208, 227
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	4 cut(s)	154, 169, 274, 404
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	2 cut(s)	306, 373
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	403
BfmI	CTRYAG	1 cut(s)	419
BfoI	RGCGCY	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	26, 27
BmrFI	CCNGG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	3 cut(s)	38, 106, 124
BsmAI	GTCTC	1 cut(s)	403
BsmBI	CGTCTC	1 cut(s)	403
BsmFI	GGGAC	3 cut(s)	38, 106, 124
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	426, 432
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	26, 27
BspMAI	CTGCAG	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	426, 432
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	160, 175
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	209, 268
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	208, 227
BstKTI	GATC	2 cut(s)	429, 435
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	2 cut(s)	426, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 212
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	331
BtrI	CACGTC	1 cut(s)	413
BtsIMutI	CAGTG	2 cut(s)	171, 217
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	2 cut(s)	208, 227
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	70, 289, 363
CviAII	CATG	2 cut(s)	345, 406
CviJI	RGCY	4 cut(s)	34, 132, 331, 383
CviKI_1	RGCY	4 cut(s)	34, 132, 331, 383
CviQI	GTAC	3 cut(s)	70, 289, 363
DdeI	CTNAG	2 cut(s)	209, 268
DpnI	GATC	2 cut(s)	428, 434
DpnII	GATC	2 cut(s)	426, 432
DraIII	CACNNNGTG	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	29
Eco32I	GATATC	2 cut(s)	233, 449
Eco47I	GGWCC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRV	GATATC	2 cut(s)	233, 449
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	403
FaeI	CATG	2 cut(s)	348, 409
FaiI	YATR	6 cut(s)	9, 22, 153, 321, 346, 407
FaqI	GGGAC	3 cut(s)	38, 106, 124
FatI	CATG	2 cut(s)	344, 405
GlaI	GCGC	2 cut(s)	207, 226
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	2 cut(s)	208, 227
Hin1II	CATG	2 cut(s)	348, 409
Hin6I	GCGC	2 cut(s)	206, 225
HinP1I	GCGC	2 cut(s)	206, 225
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	4 cut(s)	154, 169, 274, 404
Hpy166II	GTNNAC	2 cut(s)	215, 416
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	2 cut(s)	123, 430
Hpy8I	GTNNAC	2 cut(s)	215, 416
HpyAV	CCTTC	2 cut(s)	68, 342
HpyCH4III	ACNGT	2 cut(s)	160, 175
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	6 cut(s)	14, 215, 221, 312, 405, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 212
HpyF3I	CTNAG	2 cut(s)	209, 268
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	348, 409
HspAI	GCGC	2 cut(s)	206, 225
KflI	GGGWCCC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	426, 432
LpnPI	CCDG	5 cut(s)	193, 213, 299, 351, 407
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	3 cut(s)	160, 175, 280
MalI	GATC	2 cut(s)	428, 434
MboI	GATC	2 cut(s)	426, 432
MboII	GAAGA	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	48, 99, 369
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	246, 410
MslI	CAYNNNNRTG	1 cut(s)	19
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	203, 212
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	426, 432
NlaIII	CATG	2 cut(s)	348, 409
NlaIV	GGNNCC	2 cut(s)	26, 27
NmuCI	GTSAC	3 cut(s)	160, 175, 280
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	26, 27
PspPI	GGNCC	1 cut(s)	25
PspPPI	RGGWCCY	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	423
RsaI	GTAC	3 cut(s)	71, 290, 364
RsaNI	GTAC	3 cut(s)	70, 289, 363
RseI	CAYNNNNRTG	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	426, 432
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	4 cut(s)	257, 394, 402, 415
SfcI	CTRYAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	48, 99, 369
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	160, 175
TaiI	ACGT	1 cut(s)	415
TasI	AATT	3 cut(s)	48, 99, 369
TatI	WGTACW	2 cut(s)	69, 288
TscAI	CASTG	2 cut(s)	178, 217
TseFI	GTSAC	3 cut(s)	160, 175, 280
Tsp45I	GTSAC	3 cut(s)	160, 175, 280
TspRI	CASTG	2 cut(s)	178, 217
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.