Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009310

Physical Location & Seq

Genomic Coordinates Reverse (-)

66303090 .. 66308993

Gene Structure 5904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG449400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGCTGTATAGTTCTGTATGTACTTGTGTTGTGCAGATTTTGAAGCCTGCGTTTACAATTCTGGTCGATCATAACCACAAATGCTTTCTCTTGTTGATTCGTGGAACCCATAGTATCAAGGACACTTTAACAGCGGCAACAGGGGCTGTTGTACCTTTCCATCACAGTGTTGTGCATGAGGGAGGGGTCAGTGATCTAGTTTTGGGTTATGCACATTGTGGAATGGTCGCGGCTGCAAGGTGGATTGCAAAGCTTGCAAAACCGCGTCTTCTAGAAGCGCTTGACCAATATCCTGGCTATGAACTTAAGATTGTTGGGCATTCTTTGGGTGGAGGCACTGCAGCACTTTTAACATATATATTGCGTGAGCAGAAAGAACTTGCAACAACCACTTGTGTGACGTTTGCTCCAGCTGCCTGTATGACATGGGAATTGGCAGAATCAGGCGCTAAGTTTATTACTTCCGTTGTTAATGGTGCTGACTTAGTGCCCACCTTCTCTGCTGCATCAGTGGATGATTTACGTGCTGAGGTAACTGCATCTGCTTGGTTAAATGATCTGAGAAATCAGATAGAGCAGACAAGAATCCTTAGCACTGTCTATCGTTCTGCTTCAGCTTTGGGTTCACGCCTTCCATCCATTGCCACTGCTAAAGCAACAGTTGCAGGGGCAGGGGCGATTCTGCGCCCTGTTTCCAGTGGTACACAGGTTGTTATGAGAAGAGCTCAGAGCATGGCAGCATGGGCACGTCCTAACCTTCGCTTATCATCATGGAACTGCATGGCTCCTCGTCACAGAACCTCAGCCGTCTGTTCAAATTCAAATGATGAGGCAAGTTCTGCAGAGTCCTCATGTGGCCACACTGAGACTTCTGAGCCTCTCCTTACGTCTCCTAAGACAAGGACGAGCTCAAGTGTCATTGAAAGCCTTGACCTTCCTGTATCTACATCTGTAAGAATGGAGTGGACTTCGGAGATTGGATGCTCTATTTCTGATAGTGGGATGCGTCCAGATATTGATGAGGATGTCAGTAATGGAGGTGACCATGATAGACATGAAGATCGCATGACTGAAGCTGAATTGTGGCAACAACTTGAGCATGAACTTTATGATAGAACAGAAGGTGAGGAGGCAGATGTAGCAAAAGAAATAAGGGAAGAAGAAGAAGCAGCAAGAAGGGAAGAAGTAAACGAAGCGTCAATAAGGGAAGAAGAAGAAGCGGCAATTGCAGAGGTAAGCAATGGCCAGCAGGAGAGCTCTTCTCCAGGAATGAAGGAAGCGCACAGATTTTTTCCTGCAGGCAAAATCATGCATATTGTTACCCTTCATAGTGATGCTACTAATTATGAAAGTGGCAGGCCTAGCTCCAGTGGCTCGGATGAGCAGCAGCAGCCAGAAGAGACTAGGATTGGTATTTTCCTCACTCCAAGATCTCTGTACAGTAAGCTGAGGTTGTCGCAAACAATGATCAGTGATCACTTCATGCCAGTCTATAGAAGACGGATTGAGAAGCTGATAAAAGAATTTGAGAAAGAAGCAGCTTCCATTGGAGAGGTAGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

521

Amino Acids

56.95

Weight (kDa)

5.36

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	31 - 168	2e-29	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14075 AT3G14075 AT3G14075
fragaria_vesca	FvH4_6g35030
malus_domestica	MD09G1180000.v1.1 MD17G1165600.v1.1
prunus_persica	Prupe.3G038800_v2.0.a1 Prupe.3G038800_v2.0.a1
pyrus_communis	pycom09g09770 pycom17g15830
rosa_chinensis	RchiOBHm_Chr2g0146191
rosa_laevigata	RLG00000020185
rosa_multiflora	Rmu_sc0010454.1_g000013
rosa_roxburghii	Rroxscaffold_152G00434890 Rroxscaffold_2G00100260
rosa_rugosa	Rorug02G0393700 Rorug02G0393700
rosa_samantha	Rh2AG449400 Rh2BG461900 Rh2CG436300 Rh2DG471100
rosa_wichuraiana	Rw2G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	230, 265
AciI	CCGC	4 cut(s)	134, 230, 263, 1220
AcoI	YGGCCR	2 cut(s)	856, 1243
AcsI	RAATTY	2 cut(s)	817, 1523
AcuI	CTGAAG	2 cut(s)	597, 1092
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	4 cut(s)	22, 153, 703, 1439
AfeI	AGCGCT	1 cut(s)	279
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	43, 816, 822, 923
AjiI	CACGTC	1 cut(s)	749
AjnI	CCWGG	2 cut(s)	292, 1264
AleI	CACNNNNGTG	1 cut(s)	395
Alw21I	GWGCWC	3 cut(s)	727, 911, 1259
Alw26I	GTCTC	3 cut(s)	860, 894, 1394
AlwNI	CAGNNNCTG	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	279
AoxI	GGCC	3 cut(s)	856, 1243, 1358
ApoI	RAATTY	2 cut(s)	817, 1523
AspLEI	GCGC	4 cut(s)	280, 449, 687, 1282
AsuHPI	GGTGA	2 cut(s)	1052, 1136
BaeGI	GKGCMC	2 cut(s)	492, 748
BaeI	ACNNNNGTAYC	2 cut(s)	693, 726
BalI	TGGCCA	2 cut(s)	858, 1245
BanII	GRGCYC	3 cut(s)	727, 911, 1259
BbsI	GAAGAC	2 cut(s)	260, 1504
Bbv12I	GWGCWC	3 cut(s)	727, 911, 1259
BbvCI	CCTCAGC	3 cut(s)	528, 802, 1448
BccI	CCATC	2 cut(s)	168, 643
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	2 cut(s)	294, 1266
BclI	TGATCA	2 cut(s)	1467, 1474
BcoDI	GTCTC	3 cut(s)	860, 894, 1394
BfaI	CTAG	4 cut(s)	197, 272, 1362, 1404
BfmI	CTRYAG	4 cut(s)	339, 840, 1296, 1492
BfoI	RGCGCY	2 cut(s)	281, 450
BfrI	CTTAAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	1430
Bme1390I	CCNGG	2 cut(s)	294, 1266
BmgBI	CACGTC	1 cut(s)	749
BmiI	GGNNCC	2 cut(s)	106, 786
BmrFI	CCNGG	2 cut(s)	294, 1266
BmsI	GCATC	5 cut(s)	515, 548, 971, 993, 1324
BpiI	GAAGAC	2 cut(s)	260, 1504
BplI	GAGNNNNNCTC	4 cut(s)	709, 741, 1246, 1278
BpmI	CTGGAG	3 cut(s)	393, 1248, 1351
Bpu10I	CCTNAGC	4 cut(s)	528, 590, 802, 1448
BpuEI	CTTGAG	2 cut(s)	895, 1115
BsaAI	YACGTR	1 cut(s)	524
BsaXI	ACNNNNNCTCC	3 cut(s)	391, 421, 1542
Bse1I	ACTGG	3 cut(s)	696, 1368, 1487
Bse3DI	GCAATG	2 cut(s)	639, 1246
BseBI	CCWGG	2 cut(s)	294, 1266
BseGI	GGATG	6 cut(s)	520, 635, 986, 1008, 1030, 1384
BseMI	GCAATG	2 cut(s)	639, 1246
BseMII	CTCAG	7 cut(s)	519, 551, 740, 816, 855, 864, 1439
BseNI	ACTGG	3 cut(s)	696, 1368, 1487
BseRI	GAGGAG	2 cut(s)	777, 1142
BseSI	GKGCMC	2 cut(s)	492, 748
BsgI	GTGCAG	1 cut(s)	53
Bsh1236I	CGCG	2 cut(s)	230, 265
BshFI	GGCC	3 cut(s)	858, 1245, 1360
BsiHKAI	GWGCWC	3 cut(s)	727, 911, 1259
BsmAI	GTCTC	3 cut(s)	860, 894, 1394
BsmBI	CGTCTC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	858, 1245, 1360
Bsp1286I	GDGCHC	5 cut(s)	492, 727, 748, 911, 1259
Bsp1407I	TGTACA	1 cut(s)	1437
Bsp143I	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
BspACI	CCGC	4 cut(s)	134, 230, 263, 1220
BspANI	GGCC	3 cut(s)	858, 1245, 1360
BspCNI	CTCAG	7 cut(s)	520, 552, 739, 815, 856, 865, 1440
BspFNI	CGCG	2 cut(s)	230, 265
BspLI	GGNNCC	2 cut(s)	106, 786
BspMAI	CTGCAG	3 cut(s)	343, 844, 1300
BspQI	GCTCTTC	2 cut(s)	715, 1264
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	639, 1246
BsrGI	TGTACA	1 cut(s)	1437
BsrI	ACTGG	3 cut(s)	696, 1368, 1487
BssMI	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
Bst2UI	CCWGG	2 cut(s)	294, 1266
Bst4CI	ACNGT	4 cut(s)	167, 598, 661, 1442
Bst6I	CTCTTC	3 cut(s)	715, 1264, 1392
BstAFI	CTTAAG	1 cut(s)	305
BstAPI	GCANNNNNTGC	3 cut(s)	254, 662, 839
BstAUI	TGTACA	1 cut(s)	1437
BstBAI	YACGTR	1 cut(s)	524
BstC8I	GCNNGC	5 cut(s)	48, 255, 1247, 1300, 1358
BstEII	GGTNACC	1 cut(s)	1040
BstF5I	GGATG	6 cut(s)	520, 635, 986, 1008, 1030, 1384
BstFNI	CGCG	2 cut(s)	230, 265
BstH2I	RGCGCY	2 cut(s)	281, 450
BstHHI	GCGC	4 cut(s)	280, 449, 687, 1282
BstKTI	GATC	7 cut(s)	70, 196, 559, 1063, 1433, 1470, 1477
BstMAI	GTCTC	3 cut(s)	860, 894, 1394
BstMBI	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
BstNI	CCWGG	2 cut(s)	294, 1266
BstPI	GGTNACC	1 cut(s)	1040
BstSCI	CCNGG	2 cut(s)	292, 1264
BstSFI	CTRYAG	4 cut(s)	339, 840, 1296, 1492
BstSLI	GKGCMC	2 cut(s)	492, 748
BstUI	CGCG	2 cut(s)	230, 265
BstV2I	GAAGAC	2 cut(s)	260, 1504
BstX2I	RGATCY	1 cut(s)	1430
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	1430
BsuRI	GGCC	3 cut(s)	858, 1245, 1360
BtrI	CACGTC	1 cut(s)	749
BtsCI	GGATG	6 cut(s)	520, 635, 986, 1008, 1030, 1384
BtsI	GCAGTG	2 cut(s)	336, 645
Cac8I	GCNNGC	5 cut(s)	48, 255, 1247, 1300, 1358
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	4 cut(s)	280, 449, 687, 1282
CseI	GACGC	3 cut(s)	254, 995, 1185
Csp6I	GTAC	4 cut(s)	21, 152, 702, 1438
CviQI	GTAC	4 cut(s)	21, 152, 702, 1438
DpnI	GATC	7 cut(s)	69, 195, 558, 1062, 1432, 1469, 1476
DpnII	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
DraIII	CACNNNGTG	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	856, 1243
Eam1104I	CTCTTC	3 cut(s)	715, 1264, 1392
EarI	CTCTTC	3 cut(s)	715, 1264, 1392
Ecl136II	GAGCTC	3 cut(s)	725, 909, 1257
Eco147I	AGGCCT	1 cut(s)	1360
Eco24I	GRGCYC	3 cut(s)	727, 911, 1259
Eco47III	AGCGCT	1 cut(s)	279
Eco53kI	GAGCTC	3 cut(s)	725, 909, 1257
Eco57I	CTGAAG	2 cut(s)	597, 1092
Eco91I	GGTNACC	1 cut(s)	1040
EcoICRI	GAGCTC	3 cut(s)	725, 909, 1257
EcoO65I	GGTNACC	1 cut(s)	1040
EcoRII	CCWGG	2 cut(s)	292, 1264
EcoT22I	ATGCAT	1 cut(s)	1314
EcoT38I	GRGCYC	3 cut(s)	727, 911, 1259
Esp3I	CGTCTC	1 cut(s)	894
FbaI	TGATCA	2 cut(s)	1467, 1474
FokI	GGATG	6 cut(s)	527, 622, 993, 1015, 1037, 1391
FriOI	GRGCYC	3 cut(s)	727, 911, 1259
FspBI	CTAG	4 cut(s)	197, 272, 1362, 1404
GlaI	GCGC	4 cut(s)	279, 448, 686, 1281
GsuI	CTGGAG	3 cut(s)	393, 1248, 1351
HaeII	RGCGCY	2 cut(s)	281, 450
HaeIII	GGCC	3 cut(s)	858, 1245, 1360
HgaI	GACGC	3 cut(s)	254, 995, 1185
HhaI	GCGC	4 cut(s)	280, 449, 687, 1282
Hin6I	GCGC	4 cut(s)	278, 447, 685, 1280
HinP1I	GCGC	4 cut(s)	278, 447, 685, 1280
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	5 cut(s)	97, 440, 585, 679, 845
HphI	GGTGA	2 cut(s)	1052, 1136
Hpy166II	GTNNAC	5 cut(s)	54, 626, 704, 966, 1189
Hpy188I	TCNGA	7 cut(s)	561, 570, 729, 874, 973, 994, 1378
Hpy188III	TCNNGA	2 cut(s)	272, 1010
Hpy8I	GTNNAC	5 cut(s)	54, 626, 704, 966, 1189
HpyAV	CCTTC	8 cut(s)	505, 641, 767, 944, 1115, 1170, 1267, 1334
HpyCH4III	ACNGT	4 cut(s)	167, 598, 661, 1442
HpyCH4IV	ACGT	4 cut(s)	401, 523, 748, 887
HpySE526I	ACGT	4 cut(s)	401, 523, 748, 887
HspAI	GCGC	4 cut(s)	278, 447, 685, 1280
Ksp22I	TGATCA	2 cut(s)	1467, 1474
Kzo9I	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
LguI	GCTCTTC	2 cut(s)	715, 1264
LmnI	GCTCC	3 cut(s)	412, 790, 1370
LweI	GCATC	5 cut(s)	515, 548, 971, 993, 1324
MaeI	CTAG	4 cut(s)	197, 272, 1362, 1404
MaeII	ACGT	4 cut(s)	401, 523, 748, 887
MaeIII	GTNAC	5 cut(s)	397, 532, 791, 1040, 1318
MalI	GATC	7 cut(s)	69, 195, 558, 1062, 1432, 1469, 1476
MboI	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
MfeI	CAATTG	1 cut(s)	1224
MflI	RGATCY	1 cut(s)	1430
MhlI	GDGCHC	5 cut(s)	492, 727, 748, 911, 1259
MlsI	TGGCCA	2 cut(s)	858, 1245
MluCI	AATT	7 cut(s)	57, 431, 817, 1079, 1224, 1342, 1523
MluNI	TGGCCA	2 cut(s)	858, 1245
MlyI	GAGTC	1 cut(s)	854
Mox20I	TGGCCA	2 cut(s)	858, 1245
Mph1103I	ATGCAT	1 cut(s)	1314
MscI	TGGCCA	2 cut(s)	858, 1245
MseI	TTAA	5 cut(s)	128, 306, 350, 471, 551
MslI	CAYNNNNRTG	3 cut(s)	165, 395, 1332
Msp20I	TGGCCA	2 cut(s)	858, 1245
MspA1I	CMGCKG	2 cut(s)	134, 413
MspCI	CTTAAG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	294, 1266
MunI	CAATTG	1 cut(s)	1224
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	294, 1266
MvnI	CGCG	2 cut(s)	230, 265
NdeII	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
NlaIV	GGNNCC	2 cut(s)	106, 786
NmuCI	GTSAC	3 cut(s)	397, 791, 1040
NsiI	ATGCAT	1 cut(s)	1314
OliI	CACNNNNGTG	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	1360
PciSI	GCTCTTC	2 cut(s)	715, 1264
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	4 cut(s)	97, 440, 585, 679
PfoI	TCCNGGA	1 cut(s)	1264
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
Ppu21I	YACGTR	1 cut(s)	524
Psp124BI	GAGCTC	3 cut(s)	727, 911, 1259
Psp6I	CCWGG	2 cut(s)	292, 1264
PspEI	GGTNACC	1 cut(s)	1040
PspGI	CCWGG	2 cut(s)	292, 1264
PspN4I	GGNNCC	2 cut(s)	106, 786
PstI	CTGCAG	3 cut(s)	343, 844, 1300
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	1430
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	4 cut(s)	22, 153, 703, 1439
RsaNI	GTAC	4 cut(s)	21, 152, 702, 1438
RseI	CAYNNNNRTG	3 cut(s)	165, 395, 1332
SacI	GAGCTC	3 cut(s)	727, 911, 1259
SapI	GCTCTTC	2 cut(s)	715, 1264
SaqAI	TTAA	5 cut(s)	128, 306, 350, 471, 551
Sau3AI	GATC	7 cut(s)	67, 193, 556, 1060, 1430, 1467, 1474
SbfI	CCTGCAGG	1 cut(s)	1300
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	2 cut(s)	294, 1266
SdaI	CCTGCAGG	1 cut(s)	1300
SduI	GDGCHC	5 cut(s)	492, 727, 748, 911, 1259
SfaNI	GCATC	5 cut(s)	515, 548, 971, 993, 1324
SfcI	CTRYAG	4 cut(s)	339, 840, 1296, 1492
SmiMI	CAYNNNNRTG	3 cut(s)	165, 395, 1332
SmlI	CTYRAG	3 cut(s)	305, 910, 1094
SmoI	CTYRAG	3 cut(s)	305, 910, 1094
Sse8387I	CCTGCAGG	1 cut(s)	1300
Sse9I	AATT	7 cut(s)	57, 431, 817, 1079, 1224, 1342, 1523
SseBI	AGGCCT	1 cut(s)	1360
SsiI	CCGC	4 cut(s)	134, 230, 263, 1220
SspMI	CTAG	4 cut(s)	197, 272, 1362, 1404
SstI	GAGCTC	3 cut(s)	727, 911, 1259
StuI	AGGCCT	1 cut(s)	1360
StyD4I	CCNGG	2 cut(s)	292, 1264
TaaI	ACNGT	4 cut(s)	167, 598, 661, 1442
TaiI	ACGT	4 cut(s)	404, 526, 751, 890
TaqI	TCGA	1 cut(s)	66
TasI	AATT	7 cut(s)	57, 431, 817, 1079, 1224, 1342, 1523
TatI	WGTACW	2 cut(s)	20, 1437
TauI	GCSGC	3 cut(s)	137, 233, 1223
TfiI	GAWTC	4 cut(s)	97, 440, 585, 679
Tru1I	TTAA	5 cut(s)	128, 306, 350, 471, 551
Tru9I	TTAA	5 cut(s)	128, 306, 350, 471, 551
TseFI	GTSAC	3 cut(s)	397, 791, 1040
Tsp45I	GTSAC	3 cut(s)	397, 791, 1040
TspDTI	ATGAA	7 cut(s)	315, 1071, 1116, 1286, 1316, 1362, 1471
TspGWI	ACGGA	2 cut(s)	454, 1516
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	2 cut(s)	817, 1523
XbaI	TCTAGA	1 cut(s)	271
XspI	CTAG	4 cut(s)	197, 272, 1362, 1404
Zsp2I	ATGCAT	1 cut(s)	1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.