Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009310

Physical Location & Seq

Genomic Coordinates Reverse (-)

68264864 .. 68270598

Gene Structure 5735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG471100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCTGTTAGTGCTAACTCGGTATATAAATGCAGCTGCCTGTATGACATGGGAATTGGCAGAATCAGGCGCTAAGTTTATTACTTCCGTTGTTAATGGTGCTGACTTAGTGCCCACCTTCTCTGCTGCATCAGTGGATGATTTACGTGCTGAGGTAACTGCATCTGCCTGGCTAAATGATCTGAGAAATCAGATAGAGCAGACAAGAATCCTTAGCACTGTCTATCGTTCTGCTTCAGCTTTGGGTTCACGCCTTCCATCCATTGCGACTGCGAAAGCAACGGTCGCAGGGGCAGGGGCGATTCTGCGCCCTGTTTCCAGTGGTACACAGGTTGTTATGAGAAGAGCTCAGAGCATGGCAGCATGGGCACGTCCTAACCTTCGCTTATCATCATGGAACTGCATGGCTCCTCGTCACAGAACCTCAGCTGTCTGTTCAAATTCAAATGATGAGGCAAGTTCTGCAGAGTCCTCATGTGGCCACACTGAGACTTCTGAGCCTCTCCTTACGTCTCCTAAGACAAGGACGAGCTCAAGTGTCATTGAAAGCCTTGACCTTCCTGTATCTACATCTGTAAGAATGGAGTGGACTTCAGAGATTGGATGCTCTATTTCTGATAGTGGGATGCGTCCAGATATTGATGAGGATGTCAGTAATGAAGGTGACCATGATAGACATGAAGATCGCATGACTGAAGCTGAATTGTGGCAACAACTTGAGCATGAACTTTATGATAGAACAGAAGGTGAGGAGGCAGATGTAGCAAAAGAAATAAGGGAAGAAGAAGAAGAGGCAAGAAGGGAAGAAGTAAACGAAGCGTCAATAAGGGAAGAAGAAGAAGCGGCAATTGCAGAGGTAAGCAATGGCCAGCAGGAGAGCTCTTCTCCAGGAATGAAGGAAGCGCACAGATTTTTTCCTGCAGGCAAAATCATGCATATTGTTACCCTTCATAGTGGTGCTACTAATTGTGAAAGTGGCAGGCCTAGCTCCAGTGGCTCGGATGAGCAGCAGCAGCCAGAAGAGACTAGGATTGGTATTTTCCTCACTCCAAGATCTCTGTACAGTAAGCTGAGGTTGTCGCAAACAATGATCAGTGATCACTTCATGCCAGTCTATAGAAGACGGATTGAGAAGCTGATAAAAGAATTTGAGAAAGAAGCAGCTTCCATCGGAGAGGTAGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

395

Amino Acids

43.51

Weight (kDa)

4.92

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14075 AT3G14075 AT3G14075
fragaria_vesca	FvH4_6g35030
malus_domestica	MD09G1180000.v1.1 MD17G1165600.v1.1
prunus_persica	Prupe.3G038800_v2.0.a1 Prupe.3G038800_v2.0.a1
pyrus_communis	pycom09g09770 pycom17g15830
rosa_chinensis	RchiOBHm_Chr2g0146191
rosa_laevigata	RLG00000020185
rosa_multiflora	Rmu_sc0010454.1_g000013
rosa_roxburghii	Rroxscaffold_152G00434890 Rroxscaffold_2G00100260
rosa_rugosa	Rorug02G0393700 Rorug02G0393700
rosa_samantha	Rh2AG449400 Rh2BG461900 Rh2CG436300 Rh2DG471100
rosa_wichuraiana	Rw2G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	842
AcoI	YGGCCR	2 cut(s)	478, 865
AcsI	RAATTY	2 cut(s)	439, 1145
AcuI	CTGAAG	3 cut(s)	219, 576, 714
AfaI	GTAC	2 cut(s)	325, 1061
AgsI	TTSAA	3 cut(s)	438, 444, 545
AjiI	CACGTC	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	167, 886
Alw21I	GWGCWC	3 cut(s)	349, 533, 881
Alw26I	GTCTC	3 cut(s)	482, 516, 1016
AoxI	GGCC	3 cut(s)	478, 865, 980
ApeKI	GCWGC	8 cut(s)	32, 35, 125, 359, 1006, 1009, 1012, 1160
ApoI	RAATTY	2 cut(s)	439, 1145
AspLEI	GCGC	3 cut(s)	71, 309, 904
AsuHPI	GGTGA	2 cut(s)	674, 758
BaeGI	GKGCMC	2 cut(s)	114, 370
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BalI	TGGCCA	2 cut(s)	480, 867
BanII	GRGCYC	3 cut(s)	349, 533, 881
BbsI	GAAGAC	1 cut(s)	1126
Bbv12I	GWGCWC	3 cut(s)	349, 533, 881
BbvCI	CCTCAGC	3 cut(s)	150, 424, 1070
BbvI	GCAGC	8 cut(s)	22, 44, 112, 371, 1018, 1021, 1024, 1172
BccI	CCATC	2 cut(s)	265, 1175
BciT130I	CCWGG	2 cut(s)	169, 888
BclI	TGATCA	2 cut(s)	1089, 1096
BcoDI	GTCTC	3 cut(s)	482, 516, 1016
BfaI	CTAG	2 cut(s)	984, 1026
BfmI	CTRYAG	3 cut(s)	462, 918, 1114
BfoI	RGCGCY	1 cut(s)	72
BglII	AGATCT	1 cut(s)	1052
BisI	GCNGC	9 cut(s)	33, 36, 126, 360, 843, 1007, 1010, 1013, 1161
BlsI	GCNGC	9 cut(s)	34, 37, 127, 361, 844, 1008, 1011, 1014, 1162
Bme1390I	CCNGG	2 cut(s)	169, 888
BmgBI	CACGTC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	169, 888
BmsI	GCATC	4 cut(s)	137, 170, 593, 615
BpiI	GAAGAC	1 cut(s)	1126
BplI	GAGNNNNNCTC	4 cut(s)	331, 363, 868, 900
BpmI	CTGGAG	2 cut(s)	870, 973
Bpu10I	CCTNAGC	4 cut(s)	150, 212, 424, 1070
BpuEI	CTTGAG	2 cut(s)	517, 737
BsaAI	YACGTR	1 cut(s)	146
BsaXI	ACNNNNNCTCC	1 cut(s)	1164
Bse1I	ACTGG	3 cut(s)	318, 990, 1109
Bse3DI	GCAATG	2 cut(s)	261, 868
BseBI	CCWGG	2 cut(s)	169, 888
BseGI	GGATG	6 cut(s)	142, 257, 608, 630, 652, 1006
BseMI	GCAATG	2 cut(s)	261, 868
BseMII	CTCAG	7 cut(s)	141, 173, 362, 438, 477, 486, 1061
BseNI	ACTGG	3 cut(s)	318, 990, 1109
BseRI	GAGGAG	2 cut(s)	399, 764
BseSI	GKGCMC	2 cut(s)	114, 370
BseXI	GCAGC	8 cut(s)	22, 44, 112, 371, 1018, 1021, 1024, 1172
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	480, 867, 982
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	3 cut(s)	349, 533, 881
BsmAI	GTCTC	3 cut(s)	482, 516, 1016
BsmBI	CGTCTC	1 cut(s)	516
BsnI	GGCC	3 cut(s)	480, 867, 982
Bsp1286I	GDGCHC	5 cut(s)	114, 349, 370, 533, 881
Bsp1407I	TGTACA	1 cut(s)	1059
Bsp143I	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
BspACI	CCGC	1 cut(s)	842
BspANI	GGCC	3 cut(s)	480, 867, 982
BspCNI	CTCAG	7 cut(s)	142, 174, 361, 437, 478, 487, 1062
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	2 cut(s)	466, 922
BspQI	GCTCTTC	2 cut(s)	337, 886
BsrDI	GCAATG	2 cut(s)	261, 868
BsrGI	TGTACA	1 cut(s)	1059
BsrI	ACTGG	3 cut(s)	318, 990, 1109
BssMI	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
Bst2UI	CCWGG	2 cut(s)	169, 888
Bst4CI	ACNGT	3 cut(s)	220, 283, 1064
Bst6I	CTCTTC	4 cut(s)	337, 783, 886, 1014
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	1059
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	869, 922, 980
BstEII	GGTNACC	1 cut(s)	662
BstF5I	GGATG	6 cut(s)	142, 257, 608, 630, 652, 1006
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 309, 904
BstKTI	GATC	5 cut(s)	181, 685, 1055, 1092, 1099
BstMAI	GTCTC	3 cut(s)	482, 516, 1016
BstMBI	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 284, 365, 461, 761, 848, 984, 993, 1012
BstNI	CCWGG	2 cut(s)	169, 888
BstPI	GGTNACC	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	167, 886
BstSFI	CTRYAG	3 cut(s)	462, 918, 1114
BstSLI	GKGCMC	2 cut(s)	114, 370
BstV1I	GCAGC	8 cut(s)	22, 44, 112, 371, 1018, 1021, 1024, 1172
BstV2I	GAAGAC	1 cut(s)	1126
BstX2I	RGATCY	1 cut(s)	1052
BstYI	RGATCY	1 cut(s)	1052
BsuRI	GGCC	3 cut(s)	480, 867, 982
BtrI	CACGTC	1 cut(s)	371
BtsCI	GGATG	6 cut(s)	142, 257, 608, 630, 652, 1006
BtsIMutI	CAGTG	6 cut(s)	138, 216, 325, 483, 997, 1099
Cac8I	GCNNGC	3 cut(s)	869, 922, 980
CfoI	GCGC	3 cut(s)	71, 309, 904
CseI	GACGC	2 cut(s)	617, 807
Csp6I	GTAC	2 cut(s)	324, 1060
CviQI	GTAC	2 cut(s)	324, 1060
DpnI	GATC	5 cut(s)	180, 684, 1054, 1091, 1098
DpnII	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
EaeI	YGGCCR	2 cut(s)	478, 865
Eam1104I	CTCTTC	4 cut(s)	337, 783, 886, 1014
EarI	CTCTTC	4 cut(s)	337, 783, 886, 1014
Ecl136II	GAGCTC	3 cut(s)	347, 531, 879
Eco147I	AGGCCT	1 cut(s)	982
Eco24I	GRGCYC	3 cut(s)	349, 533, 881
Eco53kI	GAGCTC	3 cut(s)	347, 531, 879
Eco57I	CTGAAG	3 cut(s)	219, 576, 714
Eco91I	GGTNACC	1 cut(s)	662
EcoICRI	GAGCTC	3 cut(s)	347, 531, 879
EcoO65I	GGTNACC	1 cut(s)	662
EcoRII	CCWGG	2 cut(s)	167, 886
EcoT22I	ATGCAT	1 cut(s)	936
EcoT38I	GRGCYC	3 cut(s)	349, 533, 881
Esp3I	CGTCTC	1 cut(s)	516
FbaI	TGATCA	2 cut(s)	1089, 1096
Fnu4HI	GCNGC	9 cut(s)	33, 36, 126, 360, 843, 1007, 1010, 1013, 1161
FokI	GGATG	6 cut(s)	149, 244, 615, 637, 659, 1013
FriOI	GRGCYC	3 cut(s)	349, 533, 881
Fsp4HI	GCNGC	9 cut(s)	33, 36, 126, 360, 843, 1007, 1010, 1013, 1161
FspBI	CTAG	2 cut(s)	984, 1026
GlaI	GCGC	3 cut(s)	70, 308, 903
GluI	GCNGC	9 cut(s)	33, 36, 126, 360, 843, 1007, 1010, 1013, 1161
GsuI	CTGGAG	2 cut(s)	870, 973
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	480, 867, 982
HgaI	GACGC	2 cut(s)	617, 807
HhaI	GCGC	3 cut(s)	71, 309, 904
Hin6I	GCGC	3 cut(s)	69, 307, 902
HinP1I	GCGC	3 cut(s)	69, 307, 902
HinfI	GANTC	4 cut(s)	62, 207, 301, 467
HphI	GGTGA	2 cut(s)	674, 758
Hpy166II	GTNNAC	4 cut(s)	248, 326, 588, 811
Hpy188I	TCNGA	8 cut(s)	183, 192, 351, 496, 595, 616, 1000, 1172
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	4 cut(s)	248, 326, 588, 811
HpyAV	CCTTC	9 cut(s)	127, 263, 389, 566, 653, 737, 792, 889, 956
HpyCH4III	ACNGT	3 cut(s)	220, 283, 1064
HpyCH4IV	ACGT	3 cut(s)	145, 370, 509
HpyCH4V	TGCA	8 cut(s)	32, 128, 161, 402, 464, 851, 920, 934
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 284, 365, 461, 761, 848, 984, 993, 1012
HpySE526I	ACGT	3 cut(s)	145, 370, 509
HspAI	GCGC	3 cut(s)	69, 307, 902
Ksp22I	TGATCA	2 cut(s)	1089, 1096
Kzo9I	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
LguI	GCTCTTC	2 cut(s)	337, 886
LmnI	GCTCC	2 cut(s)	412, 992
Lsp1109I	GCAGC	8 cut(s)	22, 44, 112, 371, 1018, 1021, 1024, 1172
LweI	GCATC	4 cut(s)	137, 170, 593, 615
MaeI	CTAG	2 cut(s)	984, 1026
MaeII	ACGT	3 cut(s)	145, 370, 509
MaeIII	GTNAC	4 cut(s)	154, 413, 662, 940
MalI	GATC	5 cut(s)	180, 684, 1054, 1091, 1098
MboI	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	1052
MhlI	GDGCHC	5 cut(s)	114, 349, 370, 533, 881
MlsI	TGGCCA	2 cut(s)	480, 867
MluCI	AATT	6 cut(s)	53, 439, 701, 846, 964, 1145
MluNI	TGGCCA	2 cut(s)	480, 867
MlyI	GAGTC	1 cut(s)	476
Mox20I	TGGCCA	2 cut(s)	480, 867
Mph1103I	ATGCAT	1 cut(s)	936
MscI	TGGCCA	2 cut(s)	480, 867
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	954
Msp20I	TGGCCA	2 cut(s)	480, 867
MspA1I	CMGCKG	2 cut(s)	35, 428
MspR9I	CCNGG	2 cut(s)	169, 888
MunI	CAATTG	1 cut(s)	846
MvaI	CCWGG	2 cut(s)	169, 888
MwoI	GCNNNNNNNGC	9 cut(s)	10, 284, 365, 461, 761, 848, 984, 993, 1012
NdeII	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	413, 662
NsiI	ATGCAT	1 cut(s)	936
PceI	AGGCCT	1 cut(s)	982
PciSI	GCTCTTC	2 cut(s)	337, 886
PfeI	GAWTC	3 cut(s)	62, 207, 301
PfoI	TCCNGGA	1 cut(s)	886
PkrI	GCNGC	9 cut(s)	34, 37, 127, 361, 844, 1008, 1011, 1014, 1162
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	146
Psp124BI	GAGCTC	3 cut(s)	349, 533, 881
Psp6I	CCWGG	2 cut(s)	167, 886
PspEI	GGTNACC	1 cut(s)	662
PspGI	CCWGG	2 cut(s)	167, 886
PspN4I	GGNNCC	1 cut(s)	408
PstI	CTGCAG	2 cut(s)	466, 922
PsuI	RGATCY	1 cut(s)	1052
PvuII	CAGCTG	2 cut(s)	35, 428
RsaI	GTAC	2 cut(s)	325, 1061
RsaNI	GTAC	2 cut(s)	324, 1060
RseI	CAYNNNNRTG	1 cut(s)	954
SacI	GAGCTC	3 cut(s)	349, 533, 881
SapI	GCTCTTC	2 cut(s)	337, 886
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	9 cut(s)	33, 36, 126, 360, 843, 1007, 1010, 1013, 1161
Sau3AI	GATC	5 cut(s)	178, 682, 1052, 1089, 1096
SbfI	CCTGCAGG	1 cut(s)	922
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	169, 888
SdaI	CCTGCAGG	1 cut(s)	922
SduI	GDGCHC	5 cut(s)	114, 349, 370, 533, 881
SfaNI	GCATC	4 cut(s)	137, 170, 593, 615
SfcI	CTRYAG	3 cut(s)	462, 918, 1114
SmiMI	CAYNNNNRTG	1 cut(s)	954
SmlI	CTYRAG	2 cut(s)	532, 716
SmoI	CTYRAG	2 cut(s)	532, 716
Sse8387I	CCTGCAGG	1 cut(s)	922
Sse9I	AATT	6 cut(s)	53, 439, 701, 846, 964, 1145
SseBI	AGGCCT	1 cut(s)	982
SsiI	CCGC	1 cut(s)	842
SspMI	CTAG	2 cut(s)	984, 1026
SstI	GAGCTC	3 cut(s)	349, 533, 881
StuI	AGGCCT	1 cut(s)	982
StyD4I	CCNGG	2 cut(s)	167, 886
TaaI	ACNGT	3 cut(s)	220, 283, 1064
TaiI	ACGT	3 cut(s)	148, 373, 512
TasI	AATT	6 cut(s)	53, 439, 701, 846, 964, 1145
TatI	WGTACW	1 cut(s)	1059
TauI	GCSGC	1 cut(s)	845
TfiI	GAWTC	3 cut(s)	62, 207, 301
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	6 cut(s)	138, 223, 325, 490, 997, 1099
TseFI	GTSAC	2 cut(s)	413, 662
TseI	GCWGC	8 cut(s)	32, 35, 125, 359, 1006, 1009, 1012, 1160
Tsp45I	GTSAC	2 cut(s)	413, 662
TspDTI	ATGAA	6 cut(s)	672, 693, 738, 908, 938, 1093
TspGWI	ACGGA	2 cut(s)	76, 1138
TspRI	CASTG	6 cut(s)	138, 223, 325, 490, 997, 1099
XapI	RAATTY	2 cut(s)	439, 1145
XspI	CTAG	2 cut(s)	984, 1026
Zsp2I	ATGCAT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.