Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Forward (+)

9242770 .. 9245374

Gene Structure 2605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCCTCATTAGAGGTAAAGCAAAAGGCAAAGCATAAGCTTATTTTTAGAGGAGCGTGCTGCATTGTTCGTGCGGCAACTTTTCAAAAAATGGAAAATTCACTGATTGTACTAATATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATCGTGTCGATCTTGTCCATAATATTCCTCTACAGAAACAACACCACCAACTCCAACTTTCTGAGGTTTTTTGCTGCTTCTGCTACTACTTCACTCATCGGATCAAAACACAGAAGAACCCAACTTCCTTTGGGAACTCTTGGGCTTCCTTTTCTTGGTGAAACCATTGAGTTTGTGACTTGTGCTTACTCCGACTGCCCTGAGAGCTTCATGGACAAGCGCCGCCACTTGTATGGGAAGGTGTTCAAGTCACACATATTTGGAAGTCCAACAATTGTATCAACAGATGCCGAAGTGAGTAAAATTGTTCTGCAGAGTGATGCAAAATCTTTTGTGCCATCTTACACAAAATCTCTCACCGAGCTGATGGGGAAGTCCTCTATTTTGCTCATCAATGGATCCCTGCAGAGAAGAATCCATGGACTCATTGGAGCCTTTTTAAAGTCCCCACACCTCAAAGCTCAAATCACCACAGACATGCAAAACTATGTCCAACAATCCATGGCAAATTGGACAGACGACCATCCCATTTACATACAAGATGAAACCAAACATATTGCTTTCCAAGTACTTGTCAAAGCATTGATTAGTTTGGATCCTGGTGAGGACATGGAGTTCCTAAAGAAACAGTTCCAAGAATTCATTGCAGGCCTCATGTCTATACCCATAAACATTCCTGGAAGTAGACTTTACAGATCATTACAGGCAAAGAAGAAAATGGTCAAGCTAGTACAGGAAATCATACAAGCTAAAAAAAAAGAGAGTGATATAATCTCCAACAAGGTTCCCAAAGATGTGGTAGATGTTCTGCTGAGAGACACAAGTGAGCAGTTAACAGGGGATCGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

335

Amino Acids

37.1

Weight (kDa)

9.53

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	95 - 325	1.4e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	838
AciI	CCGC	2 cut(s)	74, 376
AclWI	GGATC	6 cut(s)	262, 546, 559, 743, 756, 1002
AcsI	RAATTY	2 cut(s)	97, 791
AfaI	GTAC	3 cut(s)	111, 723, 885
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	86, 400
AjnI	CCWGG	2 cut(s)	751, 829
AloI	GAACNNNNNNTCC	4 cut(s)	262, 294, 752, 784
AluBI	AGCT	6 cut(s)	40, 360, 517, 614, 880, 902
AluI	AGCT	6 cut(s)	40, 360, 517, 614, 880, 902
Alw26I	GTCTC	1 cut(s)	963
AlwI	GGATC	6 cut(s)	262, 546, 559, 743, 756, 1002
AoxI	GGCC	1 cut(s)	802
ApoI	RAATTY	2 cut(s)	97, 791
Asp700I	GAANNNNTTC	2 cut(s)	395, 782
AspLEI	GCGC	1 cut(s)	375
AsuHPI	GGTGA	4 cut(s)	323, 502, 613, 767
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BamHI	GGATCC	2 cut(s)	551, 748
BccI	CCATC	3 cut(s)	499, 514, 684
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	2 cut(s)	753, 831
BcoDI	GTCTC	1 cut(s)	963
BfaI	CTAG	1 cut(s)	881
BfmI	CTRYAG	3 cut(s)	184, 464, 557
BfoI	RGCGCY	1 cut(s)	376
BmcAI	AGTACT	1 cut(s)	723
Bme1390I	CCNGG	2 cut(s)	753, 831
BmiI	GGNNCC	4 cut(s)	553, 586, 750, 939
BmrFI	CCNGG	2 cut(s)	753, 831
BmsI	GCATC	2 cut(s)	430, 463
BsaJI	CCNNGG	2 cut(s)	571, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	753, 831
BseDI	CCNNGG	2 cut(s)	571, 654
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	3 cut(s)	206, 345, 956
BseRI	GAGGAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	963
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	804
Bsp143I	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
Bsp19I	CCATGG	2 cut(s)	571, 654
BspACI	CCGC	2 cut(s)	74, 376
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	3 cut(s)	207, 346, 957
BspLI	GGNNCC	4 cut(s)	553, 586, 750, 939
BspMAI	CTGCAG	2 cut(s)	468, 561
BspPI	GGATC	6 cut(s)	262, 546, 559, 743, 756, 1002
BsrDI	GCAATG	1 cut(s)	795
BssECI	CCNNGG	2 cut(s)	571, 654
BssMI	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
BssT1I	CCWWGG	2 cut(s)	571, 654
Bst2UI	CCWGG	2 cut(s)	753, 831
Bst4CI	ACNGT	1 cut(s)	783
BstC8I	GCNNGC	2 cut(s)	58, 802
BstDEI	CTNAG	3 cut(s)	215, 354, 965
BstDSI	CCRYGG	2 cut(s)	571, 654
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	6 cut(s)	165, 257, 554, 751, 851, 997
BstMAI	GTCTC	1 cut(s)	963
BstMBI	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
BstMWI	GCNNNNNNNGC	9 cut(s)	128, 131, 134, 137, 140, 143, 149, 233, 357
BstNI	CCWGG	2 cut(s)	753, 831
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	2 cut(s)	751, 829
BstSFI	CTRYAG	3 cut(s)	184, 464, 557
BstX2I	RGATCY	2 cut(s)	551, 748
BstXI	CCANNNNNNTGG	2 cut(s)	386, 949
BstYI	RGATCY	2 cut(s)	551, 748
BsuRI	GGCC	1 cut(s)	804
BtgI	CCRYGG	2 cut(s)	571, 654
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	58, 802
CfoI	GCGC	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	110, 722, 884
CviAII	CATG	6 cut(s)	364, 572, 631, 655, 763, 808
CviJI	RGCY	9 cut(s)	40, 298, 360, 517, 587, 614, 804, 880, 902
CviKI_1	RGCY	9 cut(s)	40, 298, 360, 517, 587, 614, 804, 880, 902
CviQI	GTAC	3 cut(s)	110, 722, 884
DdeI	CTNAG	3 cut(s)	215, 354, 965
DpnI	GATC	6 cut(s)	164, 256, 553, 750, 850, 996
DpnII	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
DraI	TTTAAA	1 cut(s)	594
Eco130I	CCWWGG	2 cut(s)	571, 654
Eco147I	AGGCCT	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	791
EcoRII	CCWGG	2 cut(s)	751, 829
EcoT14I	CCWWGG	2 cut(s)	571, 654
ErhI	CCWWGG	2 cut(s)	571, 654
FaeI	CATG	6 cut(s)	367, 575, 634, 658, 766, 811
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	6 cut(s)	363, 571, 630, 654, 762, 807
FblI	GTMKAC	1 cut(s)	838
FokI	GGATG	1 cut(s)	663
FspBI	CTAG	1 cut(s)	881
GlaI	GCGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	804
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	6 cut(s)	367, 575, 634, 658, 766, 811
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HincII	GTYRAC	1 cut(s)	987
HindII	GTYRAC	1 cut(s)	987
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	567, 576
HpaI	GTTAAC	1 cut(s)	987
HphI	GGTGA	4 cut(s)	323, 502, 613, 767
Hpy166II	GTNNAC	2 cut(s)	839, 987
Hpy188I	TCNGA	3 cut(s)	216, 254, 346
Hpy188III	TCNNGA	1 cut(s)	1002
Hpy8I	GTNNAC	2 cut(s)	839, 987
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	783
HpyCH4V	TGCA	6 cut(s)	63, 466, 476, 559, 634, 800
HpyF10VI	GCNNNNNNNGC	9 cut(s)	128, 131, 134, 137, 140, 143, 149, 233, 357
HpyF3I	CTNAG	3 cut(s)	215, 354, 965
Hsp92II	CATG	6 cut(s)	367, 575, 634, 658, 766, 811
HspAI	GCGC	1 cut(s)	373
KspAI	GTTAAC	1 cut(s)	987
Kzo9I	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
LmnI	GCTCC	2 cut(s)	53, 584
LweI	GCATC	2 cut(s)	430, 463
MaeI	CTAG	1 cut(s)	881
MaeIII	GTNAC	2 cut(s)	328, 402
MalI	GATC	6 cut(s)	164, 256, 553, 750, 850, 996
MboI	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
MboII	GAAGA	3 cut(s)	279, 576, 877
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	2 cut(s)	551, 748
MluCI	AATT	5 cut(s)	97, 426, 456, 661, 791
MlyI	GAGTC	1 cut(s)	570
MmeI	TCCRAC	5 cut(s)	231, 369, 446, 670, 954
MnlI	CCTC	9 cut(s)	7, 16, 44, 191, 210, 541, 617, 751, 815
MroXI	GAANNNNTTC	2 cut(s)	395, 782
MseI	TTAA	2 cut(s)	593, 986
MslI	CAYNNNNRTG	2 cut(s)	384, 629
MspR9I	CCNGG	2 cut(s)	753, 831
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	2 cut(s)	753, 831
MwoI	GCNNNNNNNGC	9 cut(s)	128, 131, 134, 137, 140, 143, 149, 233, 357
NcoI	CCATGG	2 cut(s)	571, 654
NdeII	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
NlaIII	CATG	6 cut(s)	367, 575, 634, 658, 766, 811
NlaIV	GGNNCC	4 cut(s)	553, 586, 750, 939
NmuCI	GTSAC	2 cut(s)	328, 402
NspI	RCATGY	1 cut(s)	634
PceI	AGGCCT	1 cut(s)	804
PdmI	GAANNNNTTC	2 cut(s)	395, 782
PfeI	GAWTC	1 cut(s)	567
PfoI	TCCNGGA	1 cut(s)	829
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	751, 829
PspGI	CCWGG	2 cut(s)	751, 829
PspN4I	GGNNCC	4 cut(s)	553, 586, 750, 939
PstI	CTGCAG	2 cut(s)	468, 561
PsuI	RGATCY	2 cut(s)	551, 748
RsaI	GTAC	3 cut(s)	111, 723, 885
RsaNI	GTAC	3 cut(s)	110, 722, 884
RseI	CAYNNNNRTG	2 cut(s)	384, 629
SaqAI	TTAA	2 cut(s)	593, 986
Sau3AI	GATC	6 cut(s)	162, 254, 551, 748, 848, 994
ScaI	AGTACT	1 cut(s)	723
SchI	GAGTC	1 cut(s)	570
ScrFI	CCNGG	2 cut(s)	753, 831
SfaNI	GCATC	2 cut(s)	430, 463
SfcI	CTRYAG	3 cut(s)	184, 464, 557
SmiMI	CAYNNNNRTG	2 cut(s)	384, 629
Sse9I	AATT	5 cut(s)	97, 426, 456, 661, 791
SseBI	AGGCCT	1 cut(s)	804
SsiI	CCGC	2 cut(s)	74, 376
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	1 cut(s)	881
StuI	AGGCCT	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	751, 829
StyI	CCWWGG	2 cut(s)	571, 654
TaaI	ACNGT	1 cut(s)	783
TaqI	TCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	97, 426, 456, 661, 791
TatI	WGTACW	3 cut(s)	109, 721, 883
TauI	GCSGC	2 cut(s)	77, 378
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	593, 986
Tru9I	TTAA	2 cut(s)	593, 986
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	2 cut(s)	328, 402
Tsp45I	GTSAC	2 cut(s)	328, 402
TspDTI	ATGAA	3 cut(s)	352, 711, 784
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	2 cut(s)	97, 791
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	838
XmnI	GAANNNNTTC	2 cut(s)	395, 782
XspI	CTAG	1 cut(s)	881
ZrmI	AGTACT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.