pycom09g11830

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0018397
Physical Location & Seq
Forward (+)
10017512 .. 10018078
567 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
ATGATACGCTCGACAATATGGGCTTTGCGTACAATGGAGTGTTGTATTGGTCAGGTCACCGTGATGGCTGTTTTCCGGTTCTTGGGTTGGATCCCTTCACTGATTTATGAATGTAGTTTCACTGTATTTGATGTGCCTGTACATGAGAAATTTGTAGTTGAGTGCCCAACAGTGAGTGGAGGGTTGGTGCGGATGAGTGACTATGACAGAGTTACTAGAACCTTGTTTGTTTGGAATTTGAAAGAACAAGATGTTGATTCTATAGTCGAGGGAGATAGCAAATTGTGTTTAAGTAAACAGGAGGTTTATTCCCCAGACCGAAAAATGTGTCCGGATGATGCTGAAATTGTTCAGAGGCTACCTTTCGACCCAAACAATGAGGATATTTTTTATCTACTGGTGGATGGTGATATTATCTTGTGCAAGATTCGTACAAGAAAGTGGTCAAAGATAGTTGAAAAGATTGCACTCAATGCCCCATTTTACTTCTACCCGTTCGTGCTCCCATGGTGGCCAACACCAGTTCCCAGATTACCACTCCATGCCCCGCCGTGGTGGAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

189

Amino Acids

22.0

Weight (kDa)

5.73

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 2 cut(s) 190, 548
AclWI GGATC 2 cut(s) 85, 98
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 2 cut(s) 149, 235
AfaI GTAC 3 cut(s) 31, 141, 433
AfiI CCNNNNNNNGG 2 cut(s) 82, 552
AgsI TTSAA 2 cut(s) 241, 458
AluBI AGCT 1 cut(s) 564
AluI AGCT 1 cut(s) 564
Alw21I GWGCWC 1 cut(s) 504
AlwI GGATC 2 cut(s) 85, 98
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 1 cut(s) 512
ApoI RAATTY 2 cut(s) 149, 235
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
Asp700I GAANNNNTTC 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 49, 419
BaeGI GKGCMC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 514
BamHI GGATCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 504
BccI CCATC 2 cut(s) 58, 398
BceAI ACGGC 1 cut(s) 535
BfaI CTAG 2 cut(s) 216, 565
BfmI CTRYAG 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 506, 551
BsaWI WCCGGW 2 cut(s) 75, 331
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 552
Bse1I ACTGG 2 cut(s) 402, 521
BseAI TCCGGA 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 506, 551
BseGI GGATG 3 cut(s) 198, 340, 409
BseLI CCNNNNNNNGG 2 cut(s) 82, 552
BseNI ACTGG 2 cut(s) 402, 521
BseSI GKGCMC 1 cut(s) 167
BshFI GGCC 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 2 cut(s) 76, 332
BslI CCNNNNNNNGG 2 cut(s) 82, 552
BsnI GGCC 1 cut(s) 514
Bsp1286I GDGCHC 2 cut(s) 167, 504
Bsp13I TCCGGA 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 506
BspACI CCGC 2 cut(s) 190, 548
BspANI GGCC 1 cut(s) 514
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 2 cut(s) 85, 98
BsrGI TGTACA 1 cut(s) 139
BsrI ACTGG 2 cut(s) 402, 521
BssECI CCNNGG 2 cut(s) 506, 551
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 506
Bst4CI ACNGT 3 cut(s) 61, 124, 172
BstAPI GCANNNNNTGC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 139
BstDSI CCRYGG 2 cut(s) 506, 551
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 3 cut(s) 198, 340, 409
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstPI GGTNACC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 514
BtgI CCRYGG 2 cut(s) 506, 551
BtsCI GGATG 3 cut(s) 198, 340, 409
BtsIMutI CAGTG 3 cut(s) 98, 120, 177
Csp6I GTAC 3 cut(s) 30, 140, 432
CviAII CATG 3 cut(s) 143, 507, 542
CviJI RGCY 5 cut(s) 23, 68, 358, 514, 564
CviKI_1 RGCY 5 cut(s) 23, 68, 358, 514, 564
CviQI GTAC 3 cut(s) 30, 140, 432
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 3 cut(s) 146, 510, 545
FaiI YATR 7 cut(s) 19, 108, 144, 204, 263, 508, 543
FatI CATG 3 cut(s) 142, 506, 541
FauI CCCGC 1 cut(s) 555
FokI GGATG 3 cut(s) 205, 347, 416
FspBI CTAG 2 cut(s) 216, 565
HaeIII GGCC 1 cut(s) 514
HapII CCGG 2 cut(s) 76, 332
Hin1II CATG 3 cut(s) 146, 510, 545
HinfI GANTC 2 cut(s) 257, 427
HpaII CCGG 2 cut(s) 76, 332
HphI GGTGA 2 cut(s) 49, 419
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 3 cut(s) 61, 124, 172
HpyCH4V TGCA 2 cut(s) 423, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
Hsp92II CATG 3 cut(s) 146, 510, 545
Kpn2I TCCGGA 1 cut(s) 331
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 507, 561
LpnPI CCDG 9 cut(s) 38, 89, 150, 284, 327, 345, 383, 534, 541
LweI GCATC 1 cut(s) 328
MaeI CTAG 2 cut(s) 216, 565
MaeIII GTNAC 3 cut(s) 55, 197, 211
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 167, 504
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 4 cut(s) 149, 235, 281, 345
MluNI TGGCCA 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 6 cut(s) 173, 262, 295, 348, 373, 552
Mox20I TGGCCA 1 cut(s) 514
MroI TCCGGA 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 514
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 514
MspI CCGG 2 cut(s) 76, 332
MwoI GCNNNNNNNGC 1 cut(s) 473
NcoI CCATGG 1 cut(s) 506
NdeII GATC 1 cut(s) 90
NlaIII CATG 3 cut(s) 146, 510, 545
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 55, 197
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 257, 427
PspEI GGTNACC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 3 cut(s) 31, 141, 433
RsaNI GTAC 3 cut(s) 30, 140, 432
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 290
Sau3AI GATC 1 cut(s) 90
SduI GDGCHC 2 cut(s) 167, 504
SetI ASST 5 cut(s) 57, 224, 306, 364, 566
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 62
Sse9I AATT 4 cut(s) 149, 235, 281, 345
SsiI CCGC 2 cut(s) 190, 548
SspMI CTAG 2 cut(s) 216, 565
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 3 cut(s) 61, 124, 172
TaqI TCGA 3 cut(s) 11, 267, 366
TaqII GACCGA 1 cut(s) 333
TasI AATT 4 cut(s) 149, 235, 281, 345
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 2 cut(s) 257, 427
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 3 cut(s) 105, 127, 177
TseFI GTSAC 2 cut(s) 55, 197
Tsp45I GTSAC 2 cut(s) 55, 197
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 3 cut(s) 105, 127, 177
XapI RAATTY 2 cut(s) 149, 235
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 216, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.