pycom09g12800

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0018925
Physical Location & Seq
Forward (+)
11361416 .. 11363181
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12800.2

Sequence Viewer

Length: 972 bp
ATGAGCACGCAGAGGCAGCATGTGGCCGTCCGGGACCTCGTTGAGGAAGCCAAGAAGCGGATTGTCTTTCTCGCCATTTGCGTCGTTGGCTTGTCATACCTTATGTCCTTGACGAGCTCCTCTGTCTGGGTGAACTTGCCTGCTGCCGCCTCGTTGATTGTCATAGTTCGTTATTTGTCACTAGATTATGACATGCGAAGAAAAGCTGCAGCATACAACAGCAAGCCACCATCAGCAAATACTACTTCTCAAAACAAACCTATTCAGTGGCCTAAAACTAGTCAAAAGTCTGAGTGGAGAAGGAAAGTTAATTCTCCTGTTGTCGAGGAAGCTATTGATCACTTCACCCGGCATCTAGTTTCTGAGTTTGTGACCGATCTCTGGTATTCTCGTCTAACACCGGATAGACAAGGTCCAGAAGAACTCGCGTGCATCATGAATGGTGTTCTTGGGGAAATTTCAGCACGCATGAGGAATATAAATCTGATCGATCTTCTCACAAGGGATCTTATTAATCTCATATGCTTTCACTTGGAGCTTTTCCGCATAGCTCAAGCAAAGATTCAAACGCAACAATCGGGATGCCTGACAGTTGAAAAACGAGATATGGAAATAAGACTTGTCTTGTCTGCTGAAAACAAATTGCACCCTGCTTTGTTTTCTGCTGAATCTGAGCACAAGGTCTTGCAGCATTTGATGGATGGCCTGATCTCATTCTCATTCAGGCCTGAAGATCTGCAATGCACTCTCTTCCGTTATATTGTCAGAGAACTACTTGCTTGTGCAGTAATGCGACCTGTCCTAAACTTGGCTAGTCCCAGGTTTATTAATGAAAGAATTGAATTGTTGGTCATTAAAATGACCGAGCCAAAAGGTGTTATTGCGGTACAAGAGGCATCTCAGTCCAAACCAGAGGGGCCCTCAAAGATATCATCTGATCGATCATCCCATACAACTTTTCTAGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

324

Amino Acids

36.62

Weight (kDa)

9.0

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 428
AciI CCGC 4 cut(s) 58, 147, 544, 884
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 1 cut(s) 888
AfiI CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
AgsI TTSAA 3 cut(s) 566, 596, 842
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 818
AluBI AGCT 5 cut(s) 117, 206, 332, 538, 551
AluI AGCT 5 cut(s) 117, 206, 332, 538, 551
Alw21I GWGCWC 3 cut(s) 8, 119, 678
AlwI GGATC 1 cut(s) 513
AoxI GGCC 5 cut(s) 24, 269, 703, 725, 917
ApaI GGGCCC 1 cut(s) 921
ApeKI GCWGC 5 cut(s) 16, 143, 206, 209, 688
ApoI RAATTY 1 cut(s) 456
AseI ATTAAT 2 cut(s) 513, 828
AspS9I GGNCC 4 cut(s) 34, 413, 917, 918
AsuC2I CCSGG 2 cut(s) 32, 349
AsuHPI GGTGA 2 cut(s) 142, 337
AvaII GGWCC 2 cut(s) 34, 413
BaeGI GKGCMC 1 cut(s) 921
BanII GRGCYC 2 cut(s) 119, 921
Bbv12I GWGCWC 3 cut(s) 8, 119, 678
BbvI GCAGC 5 cut(s) 28, 130, 193, 221, 700
BccI CCATC 3 cut(s) 238, 691, 695
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 820
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 2 cut(s) 32, 349
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 5 cut(s) 182, 279, 356, 813, 962
BfmI CTRYAG 1 cut(s) 207
BglII AGATCT 1 cut(s) 733
BisI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
BlsI GCNGC 6 cut(s) 18, 145, 148, 208, 211, 690
Bme1390I CCNGG 3 cut(s) 32, 349, 820
Bme18I GGWCC 2 cut(s) 34, 413
BmgT120I GGNCC 4 cut(s) 34, 413, 917, 918
BmiI GGNNCC 3 cut(s) 35, 918, 919
BmrFI CCNGG 3 cut(s) 32, 349, 820
BmsI GCATC 4 cut(s) 361, 441, 572, 905
BplI GAGNNNNNCTC 2 cut(s) 905, 937
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 2 cut(s) 32, 349
Bsa29I ATCGAT 2 cut(s) 489, 940
BsaJI CCNNGG 1 cut(s) 818
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
Bse3DI GCAATG 1 cut(s) 746
BseBI CCWGG 1 cut(s) 820
BseCI ATCGAT 2 cut(s) 489, 940
BseDI CCNNGG 1 cut(s) 818
BseGI GGATG 3 cut(s) 587, 706, 944
BseLI CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
BseMI GCAATG 1 cut(s) 746
BseMII CTCAG 4 cut(s) 282, 354, 663, 914
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 921
BseXI GCAGC 5 cut(s) 28, 130, 193, 221, 700
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 5 cut(s) 26, 271, 705, 727, 919
BshVI ATCGAT 2 cut(s) 489, 940
BsiHKAI GWGCWC 3 cut(s) 8, 119, 678
BsiSI CCGG 3 cut(s) 31, 349, 401
BslFI GGGAC 2 cut(s) 47, 801
BslI CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
BsmFI GGGAC 2 cut(s) 47, 801
BsnI GGCC 5 cut(s) 26, 271, 705, 727, 919
Bsp120I GGGCCC 1 cut(s) 917
Bsp1286I GDGCHC 4 cut(s) 8, 119, 678, 921
Bsp143I GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
BspACI CCGC 4 cut(s) 58, 147, 544, 884
BspANI GGCC 5 cut(s) 26, 271, 705, 727, 919
BspCNI CTCAG 4 cut(s) 283, 355, 664, 913
BspDI ATCGAT 2 cut(s) 489, 940
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 3 cut(s) 35, 918, 919
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 746
BssECI CCNNGG 1 cut(s) 818
BssMI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 1 cut(s) 755
BstC8I GCNNGC 5 cut(s) 8, 141, 224, 430, 466
BstDEI CTNAG 5 cut(s) 291, 363, 672, 900, 969
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 587, 706, 944
BstFNI CGCG 1 cut(s) 428
BstKTI GATC 9 cut(s) 340, 379, 489, 493, 508, 711, 736, 940, 944
BstMBI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
BstMWI GCNNNNNNNGC 2 cut(s) 16, 87
BstNI CCWGG 1 cut(s) 820
BstNSI RCATGY 2 cut(s) 23, 196
BstSCI CCNGG 3 cut(s) 30, 347, 818
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 921
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 5 cut(s) 28, 130, 193, 221, 700
BstX2I RGATCY 2 cut(s) 505, 733
BstYI RGATCY 2 cut(s) 505, 733
Bsu15I ATCGAT 2 cut(s) 489, 940
BsuRI GGCC 5 cut(s) 26, 271, 705, 727, 919
BsuTUI ATCGAT 2 cut(s) 489, 940
BtsCI GGATG 3 cut(s) 587, 706, 944
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 5 cut(s) 8, 141, 224, 430, 466
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 4 cut(s) 34, 413, 917, 918
ClaI ATCGAT 2 cut(s) 489, 940
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 887
CviAII CATG 4 cut(s) 20, 193, 436, 469
CviQI GTAC 1 cut(s) 887
DdeI CTNAG 5 cut(s) 291, 363, 672, 900, 969
DpnI GATC 9 cut(s) 339, 378, 488, 492, 507, 710, 735, 939, 943
DpnII GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 755
EarI CTCTTC 1 cut(s) 755
Ecl136II GAGCTC 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 727
Eco24I GRGCYC 2 cut(s) 119, 921
Eco32I GATATC 1 cut(s) 930
Eco47I GGWCC 2 cut(s) 34, 413
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 750
EcoICRI GAGCTC 1 cut(s) 117
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 3 cut(s) 34, 917, 918
EcoRII CCWGG 1 cut(s) 818
EcoRV GATATC 1 cut(s) 930
EcoT38I GRGCYC 2 cut(s) 119, 921
FaeI CATG 4 cut(s) 23, 196, 439, 472
FaqI GGGAC 2 cut(s) 47, 801
FatI CATG 4 cut(s) 19, 192, 435, 468
FauNDI CATATG 1 cut(s) 521
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
FokI GGATG 3 cut(s) 594, 713, 931
FriOI GRGCYC 2 cut(s) 119, 921
Fsp4HI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
FspBI CTAG 5 cut(s) 182, 279, 356, 813, 962
GluI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
HaeIII GGCC 5 cut(s) 26, 271, 705, 727, 919
HapII CCGG 3 cut(s) 31, 349, 401
HgaI GACGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 23, 196, 439, 472
HinfI GANTC 2 cut(s) 562, 668
HpaII CCGG 3 cut(s) 31, 349, 401
HphI GGTGA 2 cut(s) 142, 337
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 6 cut(s) 292, 364, 486, 673, 767, 937
Hpy188III TCNNGA 3 cut(s) 416, 436, 579
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4V TGCA 7 cut(s) 209, 432, 646, 688, 739, 744, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 87
HpyF3I CTNAG 5 cut(s) 291, 363, 672, 900, 969
Hsp92II CATG 4 cut(s) 23, 196, 439, 472
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
LmnI GCTCC 2 cut(s) 122, 535
Lsp1109I GCAGC 5 cut(s) 28, 130, 193, 221, 700
LweI GCATC 4 cut(s) 361, 441, 572, 905
MaeI CTAG 5 cut(s) 182, 279, 356, 813, 962
MaeIII GTNAC 2 cut(s) 177, 370
MalI GATC 9 cut(s) 339, 378, 488, 492, 507, 710, 735, 939, 943
MboI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
MboII GAAGA 5 cut(s) 210, 431, 485, 742, 743
MflI RGATCY 2 cut(s) 505, 733
MhlI GDGCHC 4 cut(s) 8, 119, 678, 921
MluCI AATT 5 cut(s) 310, 456, 641, 837, 842
MseI TTAA 4 cut(s) 309, 513, 828, 855
MslI CAYNNNNRTG 1 cut(s) 857
MspI CCGG 3 cut(s) 31, 349, 401
MspR9I CCNGG 3 cut(s) 32, 349, 820
MvaI CCWGG 1 cut(s) 820
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 16, 87
NciI CCSGG 2 cut(s) 32, 349
NdeI CATATG 1 cut(s) 521
NdeII GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
NlaIII CATG 4 cut(s) 23, 196, 439, 472
NlaIV GGNNCC 3 cut(s) 35, 918, 919
NmuCI GTSAC 2 cut(s) 177, 370
NspI RCATGY 2 cut(s) 23, 196
PagI TCATGA 1 cut(s) 435
PceI AGGCCT 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 2 cut(s) 562, 668
PflFI GACNNNGTC 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 6 cut(s) 18, 145, 148, 208, 211, 690
PpuMI RGGWCCY 1 cut(s) 34
PshBI ATTAAT 2 cut(s) 513, 828
Psp124BI GAGCTC 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 818
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 3 cut(s) 35, 918, 919
PspOMI GGGCCC 1 cut(s) 917
PspPI GGNCC 4 cut(s) 34, 413, 917, 918
PspPPI RGGWCCY 1 cut(s) 34
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 2 cut(s) 505, 733
PsyI GACNNNGTC 1 cut(s) 411
RsaI GTAC 1 cut(s) 888
RsaNI GTAC 1 cut(s) 887
RseI CAYNNNNRTG 1 cut(s) 857
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 4 cut(s) 309, 513, 828, 855
SatI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
Sau3AI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
Sau96I GGNCC 4 cut(s) 34, 413, 917, 918
ScrFI CCNGG 3 cut(s) 32, 349, 820
SduI GDGCHC 4 cut(s) 8, 119, 678, 921
SfaNI GCATC 4 cut(s) 361, 441, 572, 905
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 2 cut(s) 34, 413
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 5 cut(s) 310, 456, 641, 837, 842
SseBI AGGCCT 1 cut(s) 727
SsiI CCGC 4 cut(s) 58, 147, 544, 884
SspMI CTAG 5 cut(s) 182, 279, 356, 813, 962
SstI GAGCTC 1 cut(s) 119
StuI AGGCCT 1 cut(s) 727
StyD4I CCNGG 3 cut(s) 30, 347, 818
TaaI ACNGT 1 cut(s) 592
TaqI TCGA 3 cut(s) 324, 489, 940
TaqII GACCGA 2 cut(s) 389, 878
TasI AATT 5 cut(s) 310, 456, 641, 837, 842
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 562, 668
Tru1I TTAA 4 cut(s) 309, 513, 828, 855
Tru9I TTAA 4 cut(s) 309, 513, 828, 855
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 2 cut(s) 177, 370
TseI GCWGC 5 cut(s) 16, 143, 206, 209, 688
Tsp45I GTSAC 2 cut(s) 177, 370
TspDTI ATGAA 2 cut(s) 452, 846
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 272
Tth111I GACNNNGTC 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 34, 413
VspI ATTAAT 2 cut(s) 513, 828
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 1 cut(s) 456
XceI RCATGY 2 cut(s) 23, 196
XspI CTAG 5 cut(s) 182, 279, 356, 813, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.