Rh2DG421000

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018925
Physical Location & Seq
Reverse (-)
61040031 .. 61041856
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG421000.1

Sequence Viewer

Length: 999 bp
ATGAGTACGCCAAGGCAGCTTGTGAATGCCCGTGACCTTGTTGAGGAAGCCAAGAAGCGAATTGTCTTCCTCGCCGTTTGCGTTGTTGGCTTGTCATATCTCATGTCCTTGACAAGCTCCAATGTTTTGGTCAACTTGCCTGCTGCTGCTTCCTTGATTGTAATCCTTCGCTACTTATCTCTGGATTATGACATGCGAAGAAAAGCCGCAGCATATAACAATAAACCACCCCCAGCAAATAATGGTTTCCAAAGCAAACCAGTTCCATTGCCTAACACTATTGGAAAGTCCGAGTGGAGAAGAAAAGTTAATTCTCCTGTTGAGAAAGCTATAGAAAACTTCACCAGGCATCTAGTTTCTGAGTTTGTGACAGATCTCTGGTATTCTCATCTAACACCAGATAAACAAGGTCCAGAGGAACTGGTGTGCATTATCAATAGTGTTCTTGGGGAACTTGCAGCACGCATGAGGAATATAAATCTAATTGATCTTCTCACAAGGGACCTTATCAATCTCATATGCTCTCACTTGGAGCATTTTCGCATAACACAACCAAAGATTCCAAAGCAACAATCAGGATTGATGACAATTGAAAAACGAGATATGGAATTAAGGCTCGTCTTGGATGCTGAAAACAAATTGCACCCTGCTCTATTTTCTGCTGAAGCTGAGCACAAGGTTTTGCAGCATCTGATGGATGGCCTTATTTCTCTCACATTCAAGCGTGAAGATCTGCAGTGCACTTTGTTCCGTTATATTGTCAGAGAGCTTCTTGCTTGTGCAGTAATGCTTCCTGTCCTAAACTTGGCTTGTCCAAGGTTTATTAATGAAAGAATTGAACAGTTGGTCATAAAGATGAACGAATCTAAAGGTGTTACCACGGAACAAAAGGAATCTCAATCCAAACAAGAGGAGTCGTCGAGTATTTCATCCGATCACTTCTCTAGGTACTTAAGAGTTAAGACCCTTCTGTTACAGGTGTTGAACTTGTGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

332

Amino Acids

37.83

Weight (kDa)

8.89

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PXA PF02194 105 - 282 2.9e-40 PXA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 2 cut(s) 7, 950
AfiI CCNNNNNNNGG 2 cut(s) 43, 805
AflII CTTAAG 1 cut(s) 952
AgsI TTSAA 4 cut(s) 593, 721, 839, 985
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 5 cut(s) 19, 117, 329, 668, 769
AluI AGCT 5 cut(s) 19, 117, 329, 668, 769
Alw21I GWGCWC 2 cut(s) 675, 743
Alw44I GTGCAC 1 cut(s) 739
AlwNI CAGNNNCTG 1 cut(s) 691
AoxI GGCC 1 cut(s) 700
ApaLI GTGCAC 1 cut(s) 739
ApeKI GCWGC 6 cut(s) 16, 143, 146, 209, 458, 685
AseI ATTAAT 1 cut(s) 825
AspS9I GGNCC 2 cut(s) 410, 502
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 2 cut(s) 410, 502
BaeGI GKGCMC 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 675, 743
BbvI GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
BccI CCATC 2 cut(s) 688, 692
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 346
BfaI CTAG 2 cut(s) 353, 945
BfmI CTRYAG 2 cut(s) 330, 734
BfrI CTTAAG 1 cut(s) 952
BglII AGATCT 2 cut(s) 373, 730
BisI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 7 cut(s) 18, 145, 148, 208, 211, 460, 687
Bme1390I CCNGG 1 cut(s) 346
Bme18I GGWCC 2 cut(s) 410, 502
BmgT120I GGNCC 2 cut(s) 410, 502
BmiI GGNNCC 1 cut(s) 503
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 3 cut(s) 358, 616, 697
BpiI GAAGAC 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 11, 815, 879
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 805
Bse1I ACTGG 2 cut(s) 260, 426
Bse3DI GCAATG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 3 cut(s) 11, 815, 879
BseGI GGATG 3 cut(s) 631, 703, 929
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 43, 805
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 351, 660
BseNI ACTGG 2 cut(s) 260, 426
BseRI GAGGAG 1 cut(s) 926
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
BseYI CCCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 801
BshFI GGCC 1 cut(s) 702
BsiHKAI GWGCWC 2 cut(s) 675, 743
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 43, 805
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 702
Bsp1286I GDGCHC 2 cut(s) 675, 743
Bsp143I GATC 4 cut(s) 373, 487, 730, 934
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 702
BspCNI CTCAG 2 cut(s) 352, 661
BspLI GGNNCC 1 cut(s) 503
BspMAI CTGCAG 1 cut(s) 738
BspTI CTTAAG 1 cut(s) 952
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 2 cut(s) 260, 426
BssECI CCNNGG 3 cut(s) 11, 815, 879
BssMI GATC 4 cut(s) 373, 487, 730, 934
BssT1I CCWWGG 2 cut(s) 11, 815
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 1 cut(s) 843
BstAFI CTTAAG 1 cut(s) 952
BstC8I GCNNGC 2 cut(s) 141, 463
BstDEI CTNAG 2 cut(s) 360, 669
BstDSI CCRYGG 1 cut(s) 879
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 631, 703, 929
BstKTI GATC 4 cut(s) 376, 490, 733, 937
BstMBI GATC 4 cut(s) 373, 487, 730, 934
BstMWI GCNNNNNNNGC 2 cut(s) 16, 87
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 344
BstSFI CTRYAG 2 cut(s) 330, 734
BstSLI GKGCMC 1 cut(s) 743
BstV1I GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 2 cut(s) 373, 730
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 2 cut(s) 373, 730
BsuRI GGCC 1 cut(s) 702
BtgI CCRYGG 1 cut(s) 879
BtsCI GGATG 3 cut(s) 631, 703, 929
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 141, 463
CaiI CAGNNNCTG 1 cut(s) 691
Cfr13I GGNCC 2 cut(s) 410, 502
Csp6I GTAC 2 cut(s) 6, 949
CviAII CATG 3 cut(s) 103, 193, 466
CviQI GTAC 2 cut(s) 6, 949
DdeI CTNAG 2 cut(s) 360, 669
DpnI GATC 4 cut(s) 375, 489, 732, 936
DpnII GATC 4 cut(s) 373, 487, 730, 934
Eco130I CCWWGG 2 cut(s) 11, 815
Eco47I GGWCC 2 cut(s) 410, 502
Eco57I CTGAAG 1 cut(s) 684
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 11, 815
ErhI CCWWGG 2 cut(s) 11, 815
FaeI CATG 3 cut(s) 106, 196, 469
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 102, 192, 465
FauNDI CATATG 1 cut(s) 518
Fnu4HI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
FokI GGATG 3 cut(s) 638, 710, 916
Fsp4HI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
FspBI CTAG 2 cut(s) 353, 945
GluI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
GsaI CCCAGC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 702
Hin1II CATG 3 cut(s) 106, 196, 469
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 559, 863, 893, 914
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 133, 741
Hpy188I TCNGA 5 cut(s) 292, 361, 693, 764, 934
Hpy188III TCNNGA 3 cut(s) 182, 413, 576
Hpy8I GTNNAC 2 cut(s) 133, 741
Hpy99I CGWCG 1 cut(s) 922
HpyAV CCTTC 2 cut(s) 176, 977
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4V TGCA 8 cut(s) 429, 458, 643, 685, 736, 741, 782, 993
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 87
HpyF3I CTNAG 2 cut(s) 360, 669
Hsp92II CATG 3 cut(s) 106, 196, 469
Kzo9I GATC 4 cut(s) 373, 487, 730, 934
LmnI GCTCC 2 cut(s) 122, 532
Lsp1109I GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
LweI GCATC 3 cut(s) 358, 616, 697
MaeI CTAG 2 cut(s) 353, 945
MaeIII GTNAC 4 cut(s) 32, 367, 874, 972
MalI GATC 4 cut(s) 375, 489, 732, 936
MboI GATC 4 cut(s) 373, 487, 730, 934
MboII GAAGA 5 cut(s) 58, 210, 312, 482, 740
MfeI CAATTG 2 cut(s) 588, 994
MflI RGATCY 2 cut(s) 373, 730
MhlI GDGCHC 2 cut(s) 675, 743
MluCI AATT 8 cut(s) 60, 310, 483, 588, 608, 638, 834, 994
MlyI GAGTC 1 cut(s) 923
MnlI CCTC 5 cut(s) 37, 80, 409, 462, 904
MseI TTAA 5 cut(s) 309, 611, 825, 953, 960
MslI CAYNNNNRTG 1 cut(s) 854
MspCI CTTAAG 1 cut(s) 952
MspR9I CCNGG 1 cut(s) 346
MunI CAATTG 2 cut(s) 588, 994
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 16, 87
NdeI CATATG 1 cut(s) 518
NdeII GATC 4 cut(s) 373, 487, 730, 934
NlaIII CATG 3 cut(s) 106, 196, 469
NlaIV GGNNCC 1 cut(s) 503
NmuCI GTSAC 2 cut(s) 32, 367
NspI RCATGY 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 559, 863, 893
PkrI GCNGC 7 cut(s) 18, 145, 148, 208, 211, 460, 687
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
PpuMI RGGWCCY 1 cut(s) 502
PshBI ATTAAT 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 503
PspPI GGNCC 2 cut(s) 410, 502
PspPPI RGGWCCY 1 cut(s) 502
PstI CTGCAG 1 cut(s) 738
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 373, 730
RsaI GTAC 2 cut(s) 7, 950
RsaNI GTAC 2 cut(s) 6, 949
RseI CAYNNNNRTG 1 cut(s) 854
SaqAI TTAA 5 cut(s) 309, 611, 825, 953, 960
SatI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
Sau3AI GATC 4 cut(s) 373, 487, 730, 934
Sau96I GGNCC 2 cut(s) 410, 502
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 2 cut(s) 675, 743
SfaNI GCATC 3 cut(s) 358, 616, 697
SfcI CTRYAG 2 cut(s) 330, 734
SinI GGWCC 2 cut(s) 410, 502
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
Sse9I AATT 8 cut(s) 60, 310, 483, 588, 608, 638, 834, 994
SsiI CCGC 1 cut(s) 207
SspMI CTAG 2 cut(s) 353, 945
StyD4I CCNGG 1 cut(s) 344
StyI CCWWGG 2 cut(s) 11, 815
TaaI ACNGT 1 cut(s) 843
TaqI TCGA 1 cut(s) 920
TasI AATT 8 cut(s) 60, 310, 483, 588, 608, 638, 834, 994
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 3 cut(s) 559, 863, 893
Tru1I TTAA 5 cut(s) 309, 611, 825, 953, 960
Tru9I TTAA 5 cut(s) 309, 611, 825, 953, 960
TscAI CASTG 1 cut(s) 743
TseFI GTSAC 2 cut(s) 32, 367
TseI GCWGC 6 cut(s) 16, 143, 146, 209, 458, 685
Tsp45I GTSAC 2 cut(s) 32, 367
TspDTI ATGAA 3 cut(s) 843, 872, 918
TspGWI ACGGA 2 cut(s) 740, 896
TspRI CASTG 1 cut(s) 743
Vha464I CTTAAG 1 cut(s) 952
VneI GTGCAC 1 cut(s) 739
VpaK11BI GGWCC 2 cut(s) 410, 502
VspI ATTAAT 1 cut(s) 825
XagI CCTNNNNNAGG 1 cut(s) 41
XceI RCATGY 1 cut(s) 196
XspI CTAG 2 cut(s) 353, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.