Rmu_sc0000193.1_g000021

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000193.1
OG0018925
Physical Location & Seq
Reverse (-)
98582 .. 100927
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000193.1_g000021.1.cds

Sequence Viewer

Length: 1383 bp
atgagtacgccaaggcagcttgtgaatgtccgtgaccttgttgaggaagccaagaagcgaattgtcttcctggccgtttgcgtcgttgggctgtcatatctcatgtccttgacaagctccaatgttttggtcaacttgcctgctgctgcttccttgattgtaatccttcgctacttatctctggacatgcgaagaaaagccacagcatataacaataaaccacccccagcaaataatgctttccaaagcaaaccagttccattgcctaacactattggaaagtctgagtggagaagaaaagttaattctactgttgagaaagctatagaaaacttcaccaggcatctagtttctgagtttgtgacagatctttggtattctcatctaacaccagataaacaaggtccagaggaactggtgtgcattatccatagtgttcttggggaacttgtagcacgcataaggaatataaatctaattgatcttctcacaagggaccttatcaatctcatttgctctcacttggagctttttcgcataacacaaccaaagattccaaagcaacaatcaggattgatgacaattgaaaaacgagatatggaattaagactcgtcttggatgctgaaaacaaattgcaccctgctctattttctgctgaagctgagcacaaggttttgcagcatctgatggatggccttatttctctcacattcaagtgtgaagatctgcaatgcactttgttccgttatattgtcagagagcttcttgcttgtgcagtaatgcttcctgtcctaaacttggcttgtccaaggtttattaatgaaagaattgaacagttggtcataaagatgaacaaattccagaacgtctgcggacagacctgcagcatgaatggatccaaagacccattgcttttgattgatactccttcttgtccatggaactcattgcgaatgaactcccaaagtatcaatgaaagggttgcagaacagcataactcaggaggagaatggggagacatgttagatctgatatctcgcagaaagactcaagcccttgctcctgaaaattttgaaaatatgtgggcaaaagggagaaattacagaaggaaggaaggtgaaaattcgatgacggcgcaagtcccaaagggtttttccggagggaagtcgattgcaggggatcatactagggaaaaatctaatcccaccgataagcaaaatgtatctaagctcaatcttacctctcagagaggatctaccaatcaggttaaggtaaacaactctttccgctcggaagctcaaaacataccgaatcgttctccagttgctttgtatcaggaagatgatcaacacagtcctatgcggttggtggagactgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

460

Amino Acids

52.08

Weight (kDa)

8.99

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 890
AccBSI CCGCTC 1 cut(s) 1290
AccIII TCCGGA 1 cut(s) 1157
AciI CCGC 3 cut(s) 873, 1288, 1363
AclWI GGATC 4 cut(s) 891, 904, 1188, 1261
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 3 cut(s) 857, 1069, 1123
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 43, 799
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 4 cut(s) 587, 715, 833, 1076
AjnI CCWGG 2 cut(s) 69, 338
AjuI GAANNNNNNNTTGG 2 cut(s) 1138, 1170
AluBI AGCT 8 cut(s) 19, 117, 323, 529, 662, 763, 1231, 1298
AluI AGCT 8 cut(s) 19, 117, 323, 529, 662, 763, 1231, 1298
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 2 cut(s) 1011, 1367
AlwI GGATC 4 cut(s) 891, 904, 1188, 1261
AlwNI CAGNNNCTG 1 cut(s) 685
Aor13HI TCCGGA 1 cut(s) 1157
AoxI GGCC 2 cut(s) 72, 694
ApeKI GCWGC 5 cut(s) 16, 143, 146, 679, 885
ApoI RAATTY 3 cut(s) 857, 1069, 1123
AseI ATTAAT 1 cut(s) 819
Asp700I GAANNNNTTC 1 cut(s) 857
AspLEI GCGC 1 cut(s) 1138
AspS9I GGNCC 2 cut(s) 404, 496
AsuHPI GGTGA 2 cut(s) 328, 1130
AvaII GGWCC 2 cut(s) 404, 496
BamHI GGATCC 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 5 cut(s) 28, 130, 133, 691, 897
BccI CCATC 2 cut(s) 682, 686
BceAI ACGGC 2 cut(s) 59, 1149
BciT130I CCWGG 2 cut(s) 71, 340
BclI TGATCA 1 cut(s) 1345
BcoDI GTCTC 2 cut(s) 1011, 1367
BfaI CTAG 2 cut(s) 347, 1188
BfmI CTRYAG 2 cut(s) 324, 883
BfuAI ACCTGC 1 cut(s) 890
BglII AGATCT 3 cut(s) 367, 724, 1027
BisI GCNGC 5 cut(s) 17, 144, 147, 680, 886
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 5 cut(s) 18, 145, 148, 681, 887
Bme1390I CCNGG 2 cut(s) 71, 340
Bme18I GGWCC 2 cut(s) 404, 496
BmgT120I GGNCC 2 cut(s) 404, 496
BmiI GGNNCC 2 cut(s) 497, 898
BmrFI CCNGG 2 cut(s) 71, 340
BmsI GCATC 3 cut(s) 352, 610, 691
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 1305
Bpu1102I GCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 11, 809, 938
BsaWI WCCGGW 1 cut(s) 1157
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 799
Bse1I ACTGG 3 cut(s) 254, 420, 1322
Bse3DI GCAATG 4 cut(s) 260, 737, 908, 947
Bse8I GATNNNNATC 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 1157
BseBI CCWGG 2 cut(s) 71, 340
BseDI CCNNGG 3 cut(s) 11, 809, 938
BseGI GGATG 2 cut(s) 625, 697
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 43, 799
BseMI GCAATG 4 cut(s) 260, 737, 908, 947
BseMII CTCAG 5 cut(s) 276, 345, 654, 1014, 1259
BseNI ACTGG 3 cut(s) 254, 420, 1322
BseRI GAGGAG 1 cut(s) 1020
BseXI GCAGC 5 cut(s) 28, 130, 133, 691, 897
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 795
BshFI GGCC 2 cut(s) 74, 696
BsiHKAI GWGCWC 1 cut(s) 669
BsiSI CCGG 1 cut(s) 1158
BslFI GGGAC 2 cut(s) 509, 1127
BslI CCNNNNNNNGG 2 cut(s) 43, 799
BsmAI GTCTC 2 cut(s) 1011, 1367
BsmFI GGGAC 2 cut(s) 509, 1127
BsnI GGCC 2 cut(s) 74, 696
Bsp1286I GDGCHC 1 cut(s) 669
Bsp13I TCCGGA 1 cut(s) 1157
Bsp143I GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
Bsp1720I GCTNAGC 1 cut(s) 663
Bsp19I CCATGG 1 cut(s) 938
BspACI CCGC 3 cut(s) 873, 1288, 1363
BspANI GGCC 2 cut(s) 74, 696
BspCNI CTCAG 5 cut(s) 277, 346, 655, 1013, 1258
BspEI TCCGGA 1 cut(s) 1157
BspLI GGNNCC 2 cut(s) 497, 898
BspMAI CTGCAG 1 cut(s) 887
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 4 cut(s) 891, 904, 1188, 1261
BsrBI CCGCTC 1 cut(s) 1290
BsrDI GCAATG 4 cut(s) 260, 737, 908, 947
BsrI ACTGG 3 cut(s) 254, 420, 1322
BssECI CCNNGG 3 cut(s) 11, 809, 938
BssMI GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
BssT1I CCWWGG 3 cut(s) 11, 809, 938
Bst2UI CCWGG 2 cut(s) 71, 340
Bst4CI ACNGT 3 cut(s) 313, 837, 1355
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 141, 457
BstDEI CTNAG 6 cut(s) 285, 354, 663, 1000, 1227, 1245
BstDSI CCRYGG 1 cut(s) 938
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 625, 697
BstHHI GCGC 1 cut(s) 1138
BstKTI GATC 8 cut(s) 370, 484, 727, 899, 1030, 1183, 1256, 1348
BstMAI GTCTC 2 cut(s) 1011, 1367
BstMBI GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
BstMWI GCNNNNNNNGC 2 cut(s) 16, 236
BstNI CCWGG 2 cut(s) 71, 340
BstNSI RCATGY 2 cut(s) 190, 1024
BstSCI CCNGG 2 cut(s) 69, 338
BstSFI CTRYAG 2 cut(s) 324, 883
BstV1I GCAGC 5 cut(s) 28, 130, 133, 691, 897
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 5 cut(s) 367, 724, 896, 1027, 1253
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 5 cut(s) 367, 724, 896, 1027, 1253
BsuRI GGCC 2 cut(s) 74, 696
BtgI CCRYGG 1 cut(s) 938
BtsCI GGATG 2 cut(s) 625, 697
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 2 cut(s) 141, 457
CaiI CAGNNNCTG 1 cut(s) 685
CfoI GCGC 1 cut(s) 1138
Cfr13I GGNCC 2 cut(s) 404, 496
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 6
CviAII CATG 5 cut(s) 103, 187, 889, 939, 1021
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 6 cut(s) 285, 354, 663, 1000, 1227, 1245
DpnI GATC 8 cut(s) 369, 483, 726, 898, 1029, 1182, 1255, 1347
DpnII GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
EaeI YGGCCR 1 cut(s) 72
Eco130I CCWWGG 3 cut(s) 11, 809, 938
Eco32I GATATC 1 cut(s) 1035
Eco47I GGWCC 2 cut(s) 404, 496
Eco57I CTGAAG 1 cut(s) 678
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 69, 338
EcoRV GATATC 1 cut(s) 1035
EcoT14I CCWWGG 3 cut(s) 11, 809, 938
ErhI CCWWGG 3 cut(s) 11, 809, 938
FaeI CATG 5 cut(s) 106, 190, 892, 942, 1024
FaqI GGGAC 2 cut(s) 509, 1127
FatI CATG 5 cut(s) 102, 186, 888, 938, 1020
FbaI TGATCA 1 cut(s) 1345
Fnu4HI GCNGC 5 cut(s) 17, 144, 147, 680, 886
FokI GGATG 2 cut(s) 632, 704
Fsp4HI GCNGC 5 cut(s) 17, 144, 147, 680, 886
FspBI CTAG 2 cut(s) 347, 1188
GlaI GCGC 1 cut(s) 1137
GluI GCNGC 5 cut(s) 17, 144, 147, 680, 886
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 1305
HaeIII GGCC 2 cut(s) 74, 696
HapII CCGG 1 cut(s) 1158
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 1138
Hin1II CATG 5 cut(s) 106, 190, 892, 942, 1024
Hin6I GCGC 1 cut(s) 1136
HinP1I GCGC 1 cut(s) 1136
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 553, 609, 1048, 1312
HpaII CCGG 1 cut(s) 1158
HphI GGTGA 2 cut(s) 328, 1130
Hpy166II GTNNAC 2 cut(s) 133, 1276
Hpy188I TCNGA 7 cut(s) 286, 355, 687, 758, 1032, 1248, 1294
Hpy188III TCNNGA 8 cut(s) 182, 407, 570, 862, 1002, 1064, 1158, 1337
Hpy8I GTNNAC 2 cut(s) 133, 1276
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 176, 939, 1101, 1105, 1109
HpyCH4III ACNGT 3 cut(s) 313, 837, 1355
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 9 cut(s) 423, 637, 679, 730, 735, 776, 885, 986, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 236
HpyF3I CTNAG 6 cut(s) 285, 354, 663, 1000, 1227, 1245
HpySE526I ACGT 1 cut(s) 867
Hsp92II CATG 5 cut(s) 106, 190, 892, 942, 1024
HspAI GCGC 1 cut(s) 1136
Kpn2I TCCGGA 1 cut(s) 1157
Ksp22I TGATCA 1 cut(s) 1345
Kzo9I GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
LmnI GCTCC 3 cut(s) 122, 526, 1066
Lsp1109I GCAGC 5 cut(s) 28, 130, 133, 691, 897
LweI GCATC 3 cut(s) 352, 610, 691
MaeI CTAG 2 cut(s) 347, 1188
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 2 cut(s) 32, 361
MalI GATC 8 cut(s) 369, 483, 726, 898, 1029, 1182, 1255, 1347
MbiI CCGCTC 1 cut(s) 1290
MboI GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
MboII GAAGA 6 cut(s) 58, 204, 306, 476, 734, 1352
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 5 cut(s) 367, 724, 896, 1027, 1253
MhlI GDGCHC 1 cut(s) 669
MlyI GAGTC 2 cut(s) 603, 1042
MnlI CCTC 6 cut(s) 37, 403, 998, 1154, 1244, 1252
MroI TCCGGA 1 cut(s) 1157
MroXI GAANNNNTTC 1 cut(s) 857
MseI TTAA 4 cut(s) 303, 605, 819, 1269
MslI CAYNNNNRTG 2 cut(s) 715, 848
MspI CCGG 1 cut(s) 1158
MspR9I CCNGG 2 cut(s) 71, 340
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 2 cut(s) 71, 340
MwoI GCNNNNNNNGC 2 cut(s) 16, 236
NcoI CCATGG 1 cut(s) 938
NdeII GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
NlaIII CATG 5 cut(s) 106, 190, 892, 942, 1024
NlaIV GGNNCC 2 cut(s) 497, 898
NmuCI GTSAC 2 cut(s) 32, 361
NspI RCATGY 2 cut(s) 190, 1024
PciI ACATGT 1 cut(s) 1020
PdmI GAANNNNTTC 1 cut(s) 857
PfeI GAWTC 2 cut(s) 553, 1312
PkrI GCNGC 5 cut(s) 18, 145, 148, 681, 887
PleI GAGTC 2 cut(s) 603, 1042
PpsI GAGTC 2 cut(s) 603, 1042
PpuMI RGGWCCY 1 cut(s) 496
PscI ACATGT 1 cut(s) 1020
PshBI ATTAAT 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 69, 338
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 69, 338
PspN4I GGNNCC 2 cut(s) 497, 898
PspPI GGNCC 2 cut(s) 404, 496
PspPPI RGGWCCY 1 cut(s) 496
PstI CTGCAG 1 cut(s) 887
PstNI CAGNNNCTG 1 cut(s) 685
PsuI RGATCY 5 cut(s) 367, 724, 896, 1027, 1253
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 715, 848
SaqAI TTAA 4 cut(s) 303, 605, 819, 1269
SatI GCNGC 5 cut(s) 17, 144, 147, 680, 886
Sau3AI GATC 8 cut(s) 367, 481, 724, 896, 1027, 1180, 1253, 1345
Sau96I GGNCC 2 cut(s) 404, 496
SchI GAGTC 2 cut(s) 603, 1042
ScrFI CCNGG 2 cut(s) 71, 340
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 3 cut(s) 352, 610, 691
SfcI CTRYAG 2 cut(s) 324, 883
SinI GGWCC 2 cut(s) 404, 496
SmiMI CAYNNNNRTG 2 cut(s) 715, 848
SmlI CTYRAG 1 cut(s) 1050
SmoI CTYRAG 1 cut(s) 1050
SsiI CCGC 3 cut(s) 873, 1288, 1363
SspMI CTAG 2 cut(s) 347, 1188
StyD4I CCNGG 2 cut(s) 69, 338
StyI CCWWGG 3 cut(s) 11, 809, 938
TaaI ACNGT 3 cut(s) 313, 837, 1355
TaiI ACGT 1 cut(s) 870
TaqI TCGA 2 cut(s) 1127, 1169
TfiI GAWTC 2 cut(s) 553, 1312
Tru1I TTAA 4 cut(s) 303, 605, 819, 1269
Tru9I TTAA 4 cut(s) 303, 605, 819, 1269
TseFI GTSAC 2 cut(s) 32, 361
TseI GCWGC 5 cut(s) 16, 143, 146, 679, 885
Tsp45I GTSAC 2 cut(s) 32, 361
TspDTI ATGAA 5 cut(s) 837, 866, 905, 971, 990
TspGWI ACGGA 2 cut(s) 20, 734
VpaK11BI GGWCC 2 cut(s) 404, 496
VspI ATTAAT 1 cut(s) 819
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 3 cut(s) 857, 1069, 1123
XceI RCATGY 2 cut(s) 190, 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 857
XspI CTAG 2 cut(s) 347, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.