Rroxscaffold_2G00106170

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018925
Physical Location & Seq
Forward (+)
29765827 .. 29767362
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106170.1

Sequence Viewer

Length: 1041 bp
ATGAAGCTTAGTGTTGTTGTTTTTATTTCAGTGACAAGCTCCAATGTTTTGGTCAACTTGCCTGCTGCTGCTTCCTTGATTATAATCCTTCGCTACTTATCTCTGGACATGCGAAGAAAAGCCGCAGCATATAACAATAAACCACCCCCAGCAAATAATGCTTTCCAAAGCAAACCAGTTCCATTGCCTAACACTATTGGAAAGTCTGAGTGGAGAAGAAAAGTTAATTCTACTGTTGAGAAAGCTATAGAAAACTTCACCAGGCATCTAGTTTCTGAGTTTGTGACAGATCTTTGGTATTCTCGTCTAACACCAGATAAACAAGGTCCAAAGGAACTGGTGTGCATTATCCATAGTGTTCTTGGGGAACTTGTAGCACACATGAGGAATATAAATGTAATTGATCTTCTCACAAGGGACCTTATCAATCTCATTTGCTTTCACTTGGAGCTTTTTCGCATAACACAACCCAAGATTCCAAAGCAACAATCAGGATTGATGACAATTGAAAAACGAGATATGGAATTAAGACTCGTCTTGGATGCTGAAAACAAATTGCACCCTGCTCTATTTTCTGCTGAAGCTGAGCACAAGGTTTTCCAGCATCTGATGGATGGCCTTATTTCTCTCACATTCAAGCGTGAAGATCTGCAATGCACTTTGTTCCGTTATATTGTCAGAGAGCTTCTTGCTTGTGCAGTAATGCTTCCTGTCCTAAACTTGGCTTGTCCAAGCATGAATGGATCCAAAGACCCATTGCTTTTGATTGATACTCCTTCTTCTTGTCCATGGAACTCATTGCGAATGAACTCCCAAAGTATCAATGAAAGGGTTGTAGAACAGCATAACTCAGGAGGAGAATGGGGAGATATGTTAGATCTGATATCTCGCAGAAAGACTCAAGCACTTGCTCTTGAAAATTTTGAAAATATGTGGGCAAAAGGGGGAAATTACATAAAGAAGGAAGGTGAAAATCCAATATCGGAGCAAGTCCCAAAGGGTTCGTCTGGAGGGAAGTCGATTGCAGGGGATCAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

346

Amino Acids

38.87

Weight (kDa)

8.81

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PXA PF02194 77 - 243 5.1e-34 PXA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AciI CCGC 1 cut(s) 123
AclWI GGATC 3 cut(s) 738, 751, 1038
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 1 cut(s) 600
AfiI CCNNNNNNNGG 1 cut(s) 721
AgsI TTSAA 4 cut(s) 509, 637, 917, 926
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 6 cut(s) 7, 39, 245, 451, 584, 685
AluI AGCT 6 cut(s) 7, 39, 245, 451, 584, 685
Alw21I GWGCWC 1 cut(s) 591
AlwI GGATC 3 cut(s) 738, 751, 1038
AlwNI CAGNNNCTG 1 cut(s) 607
AoxI GGCC 1 cut(s) 616
ApeKI GCWGC 3 cut(s) 65, 68, 125
ApoI RAATTY 1 cut(s) 919
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
AspS9I GGNCC 2 cut(s) 326, 418
AsuHPI GGTGA 2 cut(s) 250, 980
AvaII GGWCC 2 cut(s) 326, 418
BamHI GGATCC 1 cut(s) 743
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 52, 55, 137
BccI CCATC 2 cut(s) 604, 608
BciT130I CCWGG 1 cut(s) 262
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 246
BglII AGATCT 3 cut(s) 289, 646, 877
BisI GCNGC 4 cut(s) 66, 69, 123, 126
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 4 cut(s) 67, 70, 124, 127
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 2 cut(s) 326, 418
BmgT120I GGNCC 2 cut(s) 326, 418
BmiI GGNNCC 2 cut(s) 419, 745
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 3 cut(s) 274, 532, 613
BpmI CTGGAG 1 cut(s) 1029
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 885
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 788
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 176, 342
Bse3DI GCAATG 4 cut(s) 182, 659, 755, 797
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 788
BseGI GGATG 2 cut(s) 547, 619
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 721
BseMI GCAATG 4 cut(s) 182, 659, 755, 797
BseMII CTCAG 4 cut(s) 198, 267, 576, 864
BseNI ACTGG 2 cut(s) 176, 342
BseRI GAGGAG 1 cut(s) 870
BseXI GCAGC 3 cut(s) 52, 55, 137
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 1 cut(s) 618
BsiHKAI GWGCWC 1 cut(s) 591
BslFI GGGAC 2 cut(s) 431, 977
BslI CCNNNNNNNGG 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 431, 977
BsnI GGCC 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
Bsp1720I GCTNAGC 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 788
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 618
BspCNI CTCAG 4 cut(s) 199, 268, 577, 863
BspLI GGNNCC 2 cut(s) 419, 745
BspPI GGATC 3 cut(s) 738, 751, 1038
BsrDI GCAATG 4 cut(s) 182, 659, 755, 797
BsrI ACTGG 2 cut(s) 176, 342
BssECI CCNNGG 1 cut(s) 788
BssMI GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
BssT1I CCWWGG 1 cut(s) 788
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 5 cut(s) 8, 207, 276, 585, 850
BstDSI CCRYGG 1 cut(s) 788
BstF5I GGATG 2 cut(s) 547, 619
BstKTI GATC 6 cut(s) 292, 406, 649, 746, 880, 1033
BstMBI GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 52, 55, 137
BstX2I RGATCY 4 cut(s) 289, 646, 743, 877
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 4 cut(s) 289, 646, 743, 877
BsuRI GGCC 1 cut(s) 618
BtgI CCRYGG 1 cut(s) 788
BtsCI GGATG 2 cut(s) 547, 619
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 326, 418
CviAII CATG 4 cut(s) 109, 382, 736, 789
CviJI RGCY 9 cut(s) 7, 39, 122, 245, 451, 584, 618, 685, 725
CviKI_1 RGCY 9 cut(s) 7, 39, 122, 245, 451, 584, 618, 685, 725
DdeI CTNAG 5 cut(s) 8, 207, 276, 585, 850
DpnI GATC 6 cut(s) 291, 405, 648, 745, 879, 1032
DpnII GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
Eco130I CCWWGG 1 cut(s) 788
Eco32I GATATC 1 cut(s) 885
Eco47I GGWCC 2 cut(s) 326, 418
Eco57I CTGAAG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 260
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 1 cut(s) 788
ErhI CCWWGG 1 cut(s) 788
FaeI CATG 4 cut(s) 112, 385, 739, 792
FaqI GGGAC 2 cut(s) 431, 977
FatI CATG 4 cut(s) 108, 381, 735, 788
Fnu4HI GCNGC 4 cut(s) 66, 69, 123, 126
FokI GGATG 2 cut(s) 554, 626
Fsp4HI GCNGC 4 cut(s) 66, 69, 123, 126
FspBI CTAG 1 cut(s) 269
GluI GCNGC 4 cut(s) 66, 69, 123, 126
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 1029
HaeIII GGCC 1 cut(s) 618
Hin1II CATG 4 cut(s) 112, 385, 739, 792
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 3 cut(s) 475, 531, 898
HphI GGTGA 2 cut(s) 250, 980
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 6 cut(s) 208, 277, 609, 680, 882, 985
Hpy188III TCNNGA 5 cut(s) 104, 492, 852, 914, 1008
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 98, 786, 955, 959
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 6 cut(s) 345, 559, 652, 657, 698, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 5 cut(s) 8, 207, 276, 585, 850
Hsp92II CATG 4 cut(s) 112, 385, 739, 792
Kzo9I GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
LmnI GCTCC 3 cut(s) 44, 448, 985
Lsp1109I GCAGC 3 cut(s) 52, 55, 137
LweI GCATC 3 cut(s) 274, 532, 613
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 31, 283
MalI GATC 6 cut(s) 291, 405, 648, 745, 879, 1032
MboI GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
MboII GAAGA 5 cut(s) 126, 228, 398, 656, 771
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 4 cut(s) 289, 646, 743, 877
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 7 cut(s) 226, 399, 504, 524, 554, 919, 949
MlyI GAGTC 2 cut(s) 525, 892
MnlI CCTC 3 cut(s) 378, 848, 1004
MseI TTAA 2 cut(s) 225, 527
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 788
NdeII GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
NlaIII CATG 4 cut(s) 112, 385, 739, 792
NlaIV GGNNCC 2 cut(s) 419, 745
NmuCI GTSAC 2 cut(s) 31, 283
NspI RCATGY 1 cut(s) 112
PfeI GAWTC 1 cut(s) 475
PkrI GCNGC 4 cut(s) 67, 70, 124, 127
PleI GAGTC 2 cut(s) 525, 892
PpsI GAGTC 2 cut(s) 525, 892
PpuMI RGGWCCY 1 cut(s) 418
PsiI TTATAA 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 419, 745
PspPI GGNCC 2 cut(s) 326, 418
PspPPI RGGWCCY 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 607
PsuI RGATCY 4 cut(s) 289, 646, 743, 877
SaqAI TTAA 2 cut(s) 225, 527
SatI GCNGC 4 cut(s) 66, 69, 123, 126
Sau3AI GATC 6 cut(s) 289, 403, 646, 743, 877, 1030
Sau96I GGNCC 2 cut(s) 326, 418
SchI GAGTC 2 cut(s) 525, 892
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 3 cut(s) 274, 532, 613
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 2 cut(s) 326, 418
SmlI CTYRAG 1 cut(s) 900
SmoI CTYRAG 1 cut(s) 900
Sse9I AATT 7 cut(s) 226, 399, 504, 524, 554, 919, 949
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 788
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 1019
TasI AATT 7 cut(s) 226, 399, 504, 524, 554, 919, 949
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 2 cut(s) 225, 527
Tru9I TTAA 2 cut(s) 225, 527
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 2 cut(s) 31, 283
TseI GCWGC 3 cut(s) 65, 68, 125
Tsp45I GTSAC 2 cut(s) 31, 283
TspDTI ATGAA 4 cut(s) 17, 752, 821, 840
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 326, 418
XapI RAATTY 1 cut(s) 919
XceI RCATGY 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.