Rmu_co8200004.1_g000001

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8200004.1
OG0018925
Physical Location & Seq
Forward (+)
1 .. 710
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8200004.1_g000001.1.cds

Sequence Viewer

Length: 569 bp
cttagtgttgttgtttttatttcagtgacaagctccaatgttttggtcaacttgcctgctgctgcttccttgattgtaatccttcgctacttatctctggacatgcgaagaaaagccacagcatataacaataaaccacccccagcaaataatgctttccaaagcaaaccagttccattgcctaacactattggaaagtctgagtggagaagaaaagttaattctactgttgagaaagctatagaaaacttcaccaggcatctagtttctgagtttgtgacagatctttggtattctcatctaacaccagataaacaaggtccagaggaactggtgtgcattatccatagtgttcttggggaacttgtagcacgcataaggaatataaatctaattgatcttctcacaagggaccttatcaatctcatttgctctcacttggagctttttcgcataacacaaccaaagattccaaagcaacaatcaggattgatgacaattgaaaaacgagatatggaattaagactcgtcttggatgctgaaaacaaattgcaccctgctctattttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

190

Amino Acids

21.51

Weight (kDa)

9.36

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 503
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 33, 239, 445
AluI AGCT 3 cut(s) 33, 239, 445
ApeKI GCWGC 2 cut(s) 59, 62
AspS9I GGNCC 2 cut(s) 320, 412
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 2 cut(s) 320, 412
BbvI GCAGC 2 cut(s) 46, 49
BciT130I CCWGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 283
BisI GCNGC 2 cut(s) 60, 63
BlsI GCNGC 2 cut(s) 61, 64
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 2 cut(s) 320, 412
BmgT120I GGNCC 2 cut(s) 320, 412
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 2 cut(s) 268, 526
BsaBI GATNNNNATC 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 170, 336
Bse3DI GCAATG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 541
BseJI GATNNNNATC 1 cut(s) 77
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 192, 261
BseNI ACTGG 2 cut(s) 170, 336
BseXI GCAGC 2 cut(s) 46, 49
BseYI CCCAGC 1 cut(s) 142
BslFI GGGAC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 425
Bsp143I GATC 2 cut(s) 283, 397
BspCNI CTCAG 2 cut(s) 193, 262
BspLI GGNNCC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 2 cut(s) 170, 336
BssMI GATC 2 cut(s) 283, 397
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 57, 373
BstDEI CTNAG 3 cut(s) 2, 201, 270
BstF5I GGATG 1 cut(s) 541
BstKTI GATC 2 cut(s) 286, 400
BstMBI GATC 2 cut(s) 283, 397
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 46, 49
BstX2I RGATCY 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 283
BtsCI GGATG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 57, 373
Cfr13I GGNCC 2 cut(s) 320, 412
CviAII CATG 1 cut(s) 103
CviJI RGCY 4 cut(s) 33, 116, 239, 445
CviKI_1 RGCY 4 cut(s) 33, 116, 239, 445
DdeI CTNAG 3 cut(s) 2, 201, 270
DpnI GATC 2 cut(s) 285, 399
DpnII GATC 2 cut(s) 283, 397
Eco47I GGWCC 2 cut(s) 320, 412
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 106
FaiI YATR 9 cut(s) 104, 124, 126, 242, 348, 377, 386, 455, 515
FaqI GGGAC 1 cut(s) 425
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 60, 63
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 2 cut(s) 60, 63
FspBI CTAG 1 cut(s) 263
GluI GCNGC 2 cut(s) 60, 63
GsaI CCCAGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 106
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 469, 525
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 202, 271
Hpy188III TCNNGA 3 cut(s) 98, 323, 486
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 339, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 2, 201, 270
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 2 cut(s) 283, 397
LmnI GCTCC 2 cut(s) 38, 442
Lsp1109I GCAGC 2 cut(s) 46, 49
LweI GCATC 2 cut(s) 268, 526
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 25, 277
MalI GATC 2 cut(s) 285, 399
MboI GATC 2 cut(s) 283, 397
MboII GAAGA 3 cut(s) 120, 222, 392
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 283
MluCI AATT 5 cut(s) 220, 393, 498, 518, 548
MlyI GAGTC 1 cut(s) 519
MnlI CCTC 1 cut(s) 319
MseI TTAA 2 cut(s) 219, 521
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 283, 397
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 2 cut(s) 25, 277
NspI RCATGY 1 cut(s) 106
PfeI GAWTC 1 cut(s) 469
PkrI GCNGC 2 cut(s) 61, 64
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
PpuMI RGGWCCY 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 2 cut(s) 320, 412
PspPPI RGGWCCY 1 cut(s) 412
PsuI RGATCY 1 cut(s) 283
SaqAI TTAA 2 cut(s) 219, 521
SatI GCNGC 2 cut(s) 60, 63
Sau3AI GATC 2 cut(s) 283, 397
Sau96I GGNCC 2 cut(s) 320, 412
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 1 cut(s) 256
SetI ASST 5 cut(s) 35, 241, 322, 417, 447
SfaNI GCATC 2 cut(s) 268, 526
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 2 cut(s) 320, 412
Sse9I AATT 5 cut(s) 220, 393, 498, 518, 548
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 229
TasI AATT 5 cut(s) 220, 393, 498, 518, 548
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 2 cut(s) 219, 521
Tru9I TTAA 2 cut(s) 219, 521
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 2 cut(s) 25, 277
TseI GCWGC 2 cut(s) 59, 62
Tsp45I GTSAC 2 cut(s) 25, 277
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 320, 412
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.