Rh2AG400500

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018925
Physical Location & Seq
Reverse (-)
59771885 .. 59773538
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG400500.1

Sequence Viewer

Length: 792 bp
ATGAGTACGCCAAGGCAGCTTGTGAATGCCCGTGACCTTGTTGAGGAAGCCAAGAAGCGAATTGTCTTCCTCGCCGTTTGCGTTGTTGGCTTGTCATATCTCATGTCCTTGACAAGCTCCAATGTTTTGGTCAACTTGCCTGCTGCTGCTTCCTTGATTGTAATCCTTCACTACTTATCGGTGGATTATGACATGCGAAGAAAAGCCGCAGCATATAACAATAAACCACCCCCAGCAAATAATGCTTTCCAAAGCAAACCAGCTCCATTGCCTAACACTATTGGAAAGTCCGAGTGGAGAAGAAAAGTTAATTCTCCTGTTGAGAAAGCTATAGAAAACTTCACCAGGCATCTAGTTTCTGAGTTTGTGACAGATCTCTGGTATTCTCATCTAACACCAGGTAAACAAGGTCCAGAGGAACTGGTGTGCATTATCAATAGTGTTCTTGGGGAACTTGCAGCATGCATGAGGAATATAAATCTAATTGATCTTCTCACAAGGGAACTTATCAATCTCATATGCTCTCACTTGGAGCATTTTCGCATAACACAACCAAAGATTCCAAAGCAACAATCAGGATTGATGACAATTGAAAAACGAGATATGGAATTAAGACTCGTCTTGGATGCTGAAAACAAATTGCACCCTGCTCTATTTTCTGCTGAAGCTGAGCACAAGGTTTTGCAGCATCTGATGGATGGCCTTATTTCTCTCACATTCAAGCGTGAAGATCTGCAGTGCACTTTGTTCCGTTATATTGTCAGAGAGCTTCTTGCTTGTGCAGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

263

Amino Acids

29.8

Weight (kDa)

8.7

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PXA PF02194 105 - 262 3.2e-31 PXA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 593, 721
AjnI CCWGG 2 cut(s) 344, 397
AluBI AGCT 6 cut(s) 19, 117, 263, 329, 668, 769
AluI AGCT 6 cut(s) 19, 117, 263, 329, 668, 769
Alw21I GWGCWC 2 cut(s) 675, 743
Alw44I GTGCAC 1 cut(s) 739
AlwNI CAGNNNCTG 1 cut(s) 691
AoxI GGCC 1 cut(s) 700
ApaLI GTGCAC 1 cut(s) 739
ApeKI GCWGC 6 cut(s) 16, 143, 146, 209, 458, 685
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 2 cut(s) 675, 743
BbvI GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
BccI CCATC 2 cut(s) 688, 692
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 346, 399
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 2 cut(s) 330, 734
BglII AGATCT 2 cut(s) 373, 730
BisI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 7 cut(s) 18, 145, 148, 208, 211, 460, 687
Bme1390I CCNGG 2 cut(s) 346, 399
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 346, 399
BmsI GCATC 3 cut(s) 358, 616, 697
BpiI GAAGAC 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 2 cut(s) 346, 399
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 631, 703
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 351, 660
BseNI ACTGG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
BseYI CCCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 702
BsiHKAI GWGCWC 2 cut(s) 675, 743
BslI CCNNNNNNNGG 1 cut(s) 43
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 702
Bsp1286I GDGCHC 2 cut(s) 675, 743
Bsp143I GATC 3 cut(s) 373, 487, 730
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 702
BspCNI CTCAG 2 cut(s) 352, 661
BspMAI CTGCAG 1 cut(s) 738
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 3 cut(s) 373, 487, 730
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 346, 399
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 141, 463
BstDEI CTNAG 2 cut(s) 360, 669
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 631, 703
BstKTI GATC 3 cut(s) 376, 490, 733
BstMBI GATC 3 cut(s) 373, 487, 730
BstMWI GCNNNNNNNGC 3 cut(s) 16, 87, 242
BstNI CCWGG 2 cut(s) 346, 399
BstNSI RCATGY 2 cut(s) 196, 465
BstSCI CCNGG 2 cut(s) 344, 397
BstSFI CTRYAG 2 cut(s) 330, 734
BstSLI GKGCMC 1 cut(s) 743
BstV1I GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 2 cut(s) 373, 730
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 2 cut(s) 373, 730
BsuRI GGCC 1 cut(s) 702
BtsCI GGATG 2 cut(s) 631, 703
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 141, 463
CaiI CAGNNNCTG 1 cut(s) 691
Cfr13I GGNCC 1 cut(s) 410
CsiI ACCWGGT 1 cut(s) 397
Csp6I GTAC 1 cut(s) 6
CviAII CATG 4 cut(s) 103, 193, 462, 466
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 2 cut(s) 360, 669
DpnI GATC 3 cut(s) 375, 489, 732
DpnII GATC 3 cut(s) 373, 487, 730
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 684
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 344, 397
EcoT14I CCWWGG 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 4 cut(s) 106, 196, 465, 469
FatI CATG 4 cut(s) 102, 192, 461, 465
FauNDI CATATG 1 cut(s) 518
Fnu4HI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
FokI GGATG 2 cut(s) 638, 710
Fsp4HI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
FspBI CTAG 1 cut(s) 353
GluI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
GsaI CCCAGC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 702
Hin1II CATG 4 cut(s) 106, 196, 465, 469
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 559, 615
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 133, 404, 741
Hpy188I TCNGA 4 cut(s) 292, 361, 693, 764
Hpy188III TCNNGA 2 cut(s) 413, 576
Hpy8I GTNNAC 3 cut(s) 133, 404, 741
HpyAV CCTTC 1 cut(s) 176
HpyCH4V TGCA 8 cut(s) 429, 458, 465, 643, 685, 736, 741, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 87, 242
HpyF3I CTNAG 2 cut(s) 360, 669
Hsp92II CATG 4 cut(s) 106, 196, 465, 469
Kzo9I GATC 3 cut(s) 373, 487, 730
LmnI GCTCC 3 cut(s) 122, 268, 532
Lsp1109I GCAGC 6 cut(s) 28, 130, 133, 221, 470, 697
LweI GCATC 3 cut(s) 358, 616, 697
MabI ACCWGGT 1 cut(s) 397
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 32, 367
MalI GATC 3 cut(s) 375, 489, 732
MboI GATC 3 cut(s) 373, 487, 730
MboII GAAGA 5 cut(s) 58, 210, 312, 482, 740
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 2 cut(s) 373, 730
MhlI GDGCHC 2 cut(s) 675, 743
MluCI AATT 6 cut(s) 60, 310, 483, 588, 608, 638
MlyI GAGTC 1 cut(s) 609
MnlI CCTC 4 cut(s) 37, 80, 409, 462
Mph1103I ATGCAT 1 cut(s) 467
MseI TTAA 3 cut(s) 309, 611, 790
MspR9I CCNGG 2 cut(s) 346, 399
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 2 cut(s) 346, 399
MwoI GCNNNNNNNGC 3 cut(s) 16, 87, 242
NdeI CATATG 1 cut(s) 518
NdeII GATC 3 cut(s) 373, 487, 730
NlaIII CATG 4 cut(s) 106, 196, 465, 469
NmuCI GTSAC 2 cut(s) 32, 367
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 2 cut(s) 196, 465
PaeI GCATGC 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 559
PkrI GCNGC 7 cut(s) 18, 145, 148, 208, 211, 460, 687
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 344, 397
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 344, 397
PspPI GGNCC 1 cut(s) 410
PstI CTGCAG 1 cut(s) 738
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 373, 730
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 3 cut(s) 309, 611, 790
SatI GCNGC 7 cut(s) 17, 144, 147, 207, 210, 459, 686
Sau3AI GATC 3 cut(s) 373, 487, 730
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 2 cut(s) 346, 399
SduI GDGCHC 2 cut(s) 675, 743
SexAI ACCWGGT 1 cut(s) 397
SfaNI GCATC 3 cut(s) 358, 616, 697
SfcI CTRYAG 2 cut(s) 330, 734
SinI GGWCC 1 cut(s) 410
SphI GCATGC 1 cut(s) 465
Sse9I AATT 6 cut(s) 60, 310, 483, 588, 608, 638
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 344, 397
StyI CCWWGG 1 cut(s) 11
TasI AATT 6 cut(s) 60, 310, 483, 588, 608, 638
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 3 cut(s) 309, 611, 790
Tru9I TTAA 3 cut(s) 309, 611, 790
TscAI CASTG 1 cut(s) 743
TseFI GTSAC 2 cut(s) 32, 367
TseI GCWGC 6 cut(s) 16, 143, 146, 209, 458, 685
Tsp45I GTSAC 2 cut(s) 32, 367
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 1 cut(s) 743
VneI GTGCAC 1 cut(s) 739
VpaK11BI GGWCC 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 41
XceI RCATGY 2 cut(s) 196, 465
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.