Rw2G032570

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018925
Physical Location & Seq
Reverse (-)
53547826 .. 53550172
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032570.1

Sequence Viewer

Length: 1308 bp
ATGAGTACGCCAAGGCAGCTTGTGAATGTCCGTGACCTTGTTGAGGAAGCCAAGAAGCGAATTGTCTTCCTGGCCGTTTGCGTCGTTGGGCTGTCATATCTCATGTCCTTGACAAGCTCCAATGTTTTGGTCAACTTGCCTGCTGCTGCTTCCTTGATTGTAATCCTTCGCTACTTATCTCTGGACATGCGAAGAAAAGCCACAGCATATAACAATAAACCACCCCCAGCAAATAATGCTTTCCAAAGCAAACCAGTTCCATTGCCTAACACTATTGGAAAGTCTGAGTGGAGAAGAAAAGTTAATTCTACTGTTGAGAAAGCTATAGAAAACTTCACCAGGCATCTAGTTTCTGAGTTTGTGACAGATCTTTGGTATTCTCATCTAACACCAGATAAACAAGGTCCAGAGGAACTGGTGTGCATTATCCATAGTGTTCTTGGGGAACTTGTAGCACGCATAAGGAATATAAATCTAATTGATCTTCTCACAAGGGACCTTATCAATCTCATTTGCTCTCACTTGGAGCTTTTTTGCATAACACAACCAAAGATTCCAAAGCAACAATCAGGATTGATGACAATTGAAAAACGAGATATGGAATTAAGACTCGTCTTGGATGCTGAAAACAAATTGCACCCTGCTCTATTTTCTGCTGAAGCTGAGCACAAGGTTTTGCAGCATCTGATGGATGGCCTTATTTCTCTCACATTCAAGTGTGAAGACCTGCAATGCACTTTGTTCCGTTATATTGTCAGAGAGCTTCTTGCTTGTGCAGTAATGCTTCCTGTCCTAAACTTGGCTTGTCCAAGCATGAATGGATCCAAAGACCCATTGCTTTTGATTGATACTCCTTCTTGTCCATGGAACTCATTGCGAATGAACTCCCAAAGTATCAATGAAAGGGTTGCAGAACAGCATAACTCAGGAGGAGAATGGGGAGACATGTTAGATCTGATATCTCGCAGAAAGACTCAAGCCCTTGCTCCTGAAAATTTTGAAAATATGTGGGCAAAAGGGAGAAATTACAGAAGGAAGGAAGGTGAAAATTCGATGACGGCGCAAGTCCCAAAGGGTTTTTCCGGAGGGAAGTCGATTGCAGGGGATCATACTAGGGAAAAATCTAATCCCACCGATAAGCAAAATGTATCTAAGCTCAATCTTACCTCTCAGACAGGATATACCAATCAGGTTAAGGTAAACAACTCTTTCCGCTCGGAAGCTCAAAACATACCGAATCGCTCTCCAGTTGCTTTGTATCAGGAAGATGATCAACACAGTCCTATGCGGTTGGTGGAGACTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

435

Amino Acids

49.05

Weight (kDa)

8.63

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PXA PF02194 103 - 269 1.4e-34 PXA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 735
AccBSI CCGCTC 1 cut(s) 1215
AccIII TCCGGA 1 cut(s) 1082
AciI CCGC 2 cut(s) 1213, 1288
AclWI GGATC 3 cut(s) 816, 829, 1113
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 2 cut(s) 994, 1048
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 43, 799
AflIII ACRYGT 1 cut(s) 945
AgsI TTSAA 3 cut(s) 587, 715, 1001
AjnI CCWGG 2 cut(s) 69, 338
AjuI GAANNNNNNNTTGG 2 cut(s) 1063, 1095
AluBI AGCT 8 cut(s) 19, 117, 323, 529, 662, 763, 1156, 1223
AluI AGCT 8 cut(s) 19, 117, 323, 529, 662, 763, 1156, 1223
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 2 cut(s) 936, 1292
AlwI GGATC 3 cut(s) 816, 829, 1113
AlwNI CAGNNNCTG 1 cut(s) 685
Aor13HI TCCGGA 1 cut(s) 1082
AoxI GGCC 2 cut(s) 72, 694
ApeKI GCWGC 4 cut(s) 16, 143, 146, 679
ApoI RAATTY 2 cut(s) 994, 1048
AspLEI GCGC 1 cut(s) 1063
AspS9I GGNCC 2 cut(s) 404, 496
AsuHPI GGTGA 2 cut(s) 328, 1055
AvaII GGWCC 2 cut(s) 404, 496
BamHI GGATCC 1 cut(s) 821
BbsI GAAGAC 2 cut(s) 58, 729
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 4 cut(s) 28, 130, 133, 691
BccI CCATC 2 cut(s) 682, 686
BceAI ACGGC 2 cut(s) 59, 1074
BciT130I CCWGG 2 cut(s) 71, 340
BclI TGATCA 1 cut(s) 1270
BcoDI GTCTC 2 cut(s) 936, 1292
BfaI CTAG 2 cut(s) 347, 1113
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 735
BglII AGATCT 2 cut(s) 367, 952
BisI GCNGC 4 cut(s) 17, 144, 147, 680
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 4 cut(s) 18, 145, 148, 681
Bme1390I CCNGG 2 cut(s) 71, 340
Bme18I GGWCC 2 cut(s) 404, 496
BmgT120I GGNCC 2 cut(s) 404, 496
BmiI GGNNCC 2 cut(s) 497, 823
BmrFI CCNGG 2 cut(s) 71, 340
BmsI GCATC 3 cut(s) 352, 610, 691
BpiI GAAGAC 2 cut(s) 58, 729
BpmI CTGGAG 1 cut(s) 1230
Bpu1102I GCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 960
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 11, 863
BsaWI WCCGGW 1 cut(s) 1082
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 799
Bse1I ACTGG 3 cut(s) 254, 420, 1247
Bse3DI GCAATG 4 cut(s) 260, 737, 833, 872
Bse8I GATNNNNATC 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 1082
BseBI CCWGG 2 cut(s) 71, 340
BseDI CCNNGG 2 cut(s) 11, 863
BseGI GGATG 2 cut(s) 625, 697
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 43, 799
BseMI GCAATG 4 cut(s) 260, 737, 833, 872
BseMII CTCAG 5 cut(s) 276, 345, 654, 939, 1184
BseNI ACTGG 3 cut(s) 254, 420, 1247
BseRI GAGGAG 1 cut(s) 945
BseXI GCAGC 4 cut(s) 28, 130, 133, 691
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 795
BshFI GGCC 2 cut(s) 74, 696
BsiHKAI GWGCWC 1 cut(s) 669
BsiSI CCGG 1 cut(s) 1083
BslFI GGGAC 2 cut(s) 509, 1052
BslI CCNNNNNNNGG 2 cut(s) 43, 799
BsmAI GTCTC 2 cut(s) 936, 1292
BsmFI GGGAC 2 cut(s) 509, 1052
BsnI GGCC 2 cut(s) 74, 696
Bsp1286I GDGCHC 1 cut(s) 669
Bsp13I TCCGGA 1 cut(s) 1082
Bsp143I GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
Bsp1720I GCTNAGC 1 cut(s) 663
Bsp19I CCATGG 1 cut(s) 863
BspACI CCGC 2 cut(s) 1213, 1288
BspANI GGCC 2 cut(s) 74, 696
BspCNI CTCAG 5 cut(s) 277, 346, 655, 938, 1183
BspEI TCCGGA 1 cut(s) 1082
BspLI GGNNCC 2 cut(s) 497, 823
BspMI ACCTGC 1 cut(s) 735
BspPI GGATC 3 cut(s) 816, 829, 1113
BsrBI CCGCTC 1 cut(s) 1215
BsrDI GCAATG 4 cut(s) 260, 737, 833, 872
BsrI ACTGG 3 cut(s) 254, 420, 1247
BssECI CCNNGG 2 cut(s) 11, 863
BssMI GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
BssT1I CCWWGG 2 cut(s) 11, 863
Bst2UI CCWGG 2 cut(s) 71, 340
Bst4CI ACNGT 2 cut(s) 313, 1280
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 141, 457
BstDEI CTNAG 6 cut(s) 285, 354, 663, 925, 1152, 1170
BstDSI CCRYGG 1 cut(s) 863
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 625, 697
BstHHI GCGC 1 cut(s) 1063
BstKTI GATC 6 cut(s) 370, 484, 824, 955, 1108, 1273
BstMAI GTCTC 2 cut(s) 936, 1292
BstMBI GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
BstMWI GCNNNNNNNGC 2 cut(s) 16, 236
BstNI CCWGG 2 cut(s) 71, 340
BstNSI RCATGY 2 cut(s) 190, 949
BstSCI CCNGG 2 cut(s) 69, 338
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 28, 130, 133, 691
BstV2I GAAGAC 2 cut(s) 58, 729
BstX2I RGATCY 3 cut(s) 367, 821, 952
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 3 cut(s) 367, 821, 952
BsuRI GGCC 2 cut(s) 74, 696
BtgI CCRYGG 1 cut(s) 863
BtsCI GGATG 2 cut(s) 625, 697
BveI ACCTGC 1 cut(s) 735
Cac8I GCNNGC 2 cut(s) 141, 457
CaiI CAGNNNCTG 1 cut(s) 685
CfoI GCGC 1 cut(s) 1063
Cfr13I GGNCC 2 cut(s) 404, 496
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 6
CviAII CATG 5 cut(s) 103, 187, 814, 864, 946
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 6 cut(s) 285, 354, 663, 925, 1152, 1170
DpnI GATC 6 cut(s) 369, 483, 823, 954, 1107, 1272
DpnII GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
EaeI YGGCCR 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 11, 863
Eco32I GATATC 1 cut(s) 960
Eco47I GGWCC 2 cut(s) 404, 496
Eco57I CTGAAG 1 cut(s) 678
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 69, 338
EcoRV GATATC 1 cut(s) 960
EcoT14I CCWWGG 2 cut(s) 11, 863
ErhI CCWWGG 2 cut(s) 11, 863
FaeI CATG 5 cut(s) 106, 190, 817, 867, 949
FaqI GGGAC 2 cut(s) 509, 1052
FatI CATG 5 cut(s) 102, 186, 813, 863, 945
FbaI TGATCA 1 cut(s) 1270
Fnu4HI GCNGC 4 cut(s) 17, 144, 147, 680
FokI GGATG 2 cut(s) 632, 704
Fsp4HI GCNGC 4 cut(s) 17, 144, 147, 680
FspBI CTAG 2 cut(s) 347, 1113
GlaI GCGC 1 cut(s) 1062
GluI GCNGC 4 cut(s) 17, 144, 147, 680
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 1230
HaeIII GGCC 2 cut(s) 74, 696
HapII CCGG 1 cut(s) 1083
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 1063
Hin1II CATG 5 cut(s) 106, 190, 817, 867, 949
Hin6I GCGC 1 cut(s) 1061
HinP1I GCGC 1 cut(s) 1061
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 553, 609, 973, 1237
HpaII CCGG 1 cut(s) 1083
HphI GGTGA 2 cut(s) 328, 1055
Hpy166II GTNNAC 2 cut(s) 133, 1201
Hpy188I TCNGA 7 cut(s) 286, 355, 687, 758, 957, 1173, 1219
Hpy188III TCNNGA 7 cut(s) 182, 407, 570, 927, 989, 1083, 1262
Hpy8I GTNNAC 2 cut(s) 133, 1201
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 176, 864, 1026, 1030, 1034
HpyCH4III ACNGT 2 cut(s) 313, 1280
HpyCH4V TGCA 9 cut(s) 423, 537, 637, 679, 730, 735, 776, 911, 1100
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 236
HpyF3I CTNAG 6 cut(s) 285, 354, 663, 925, 1152, 1170
Hsp92II CATG 5 cut(s) 106, 190, 817, 867, 949
HspAI GCGC 1 cut(s) 1061
Kpn2I TCCGGA 1 cut(s) 1082
Ksp22I TGATCA 1 cut(s) 1270
Kzo9I GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
LmnI GCTCC 3 cut(s) 122, 526, 991
Lsp1109I GCAGC 4 cut(s) 28, 130, 133, 691
LweI GCATC 3 cut(s) 352, 610, 691
MaeI CTAG 2 cut(s) 347, 1113
MaeIII GTNAC 2 cut(s) 32, 361
MalI GATC 6 cut(s) 369, 483, 823, 954, 1107, 1272
MbiI CCGCTC 1 cut(s) 1215
MboI GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
MboII GAAGA 6 cut(s) 58, 204, 306, 476, 734, 1277
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 3 cut(s) 367, 821, 952
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 9 cut(s) 60, 304, 477, 582, 602, 632, 994, 1024, 1048
MlyI GAGTC 2 cut(s) 603, 967
MnlI CCTC 5 cut(s) 37, 403, 923, 1079, 1177
MroI TCCGGA 1 cut(s) 1082
MseI TTAA 3 cut(s) 303, 605, 1194
MslI CAYNNNNRTG 1 cut(s) 715
MspI CCGG 1 cut(s) 1083
MspR9I CCNGG 2 cut(s) 71, 340
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 2 cut(s) 71, 340
MwoI GCNNNNNNNGC 2 cut(s) 16, 236
NcoI CCATGG 1 cut(s) 863
NdeII GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
NlaIII CATG 5 cut(s) 106, 190, 817, 867, 949
NlaIV GGNNCC 2 cut(s) 497, 823
NmuCI GTSAC 2 cut(s) 32, 361
NspI RCATGY 2 cut(s) 190, 949
PciI ACATGT 1 cut(s) 945
PfeI GAWTC 2 cut(s) 553, 1237
PkrI GCNGC 4 cut(s) 18, 145, 148, 681
PleI GAGTC 2 cut(s) 603, 967
PpsI GAGTC 2 cut(s) 603, 967
PpuMI RGGWCCY 1 cut(s) 496
PscI ACATGT 1 cut(s) 945
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 69, 338
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 69, 338
PspN4I GGNNCC 2 cut(s) 497, 823
PspPI GGNCC 2 cut(s) 404, 496
PspPPI RGGWCCY 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 685
PsuI RGATCY 3 cut(s) 367, 821, 952
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 715
SaqAI TTAA 3 cut(s) 303, 605, 1194
SatI GCNGC 4 cut(s) 17, 144, 147, 680
Sau3AI GATC 6 cut(s) 367, 481, 821, 952, 1105, 1270
Sau96I GGNCC 2 cut(s) 404, 496
SchI GAGTC 2 cut(s) 603, 967
ScrFI CCNGG 2 cut(s) 71, 340
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 3 cut(s) 352, 610, 691
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 2 cut(s) 404, 496
SmiMI CAYNNNNRTG 1 cut(s) 715
SmlI CTYRAG 1 cut(s) 975
SmoI CTYRAG 1 cut(s) 975
Sse9I AATT 9 cut(s) 60, 304, 477, 582, 602, 632, 994, 1024, 1048
SsiI CCGC 2 cut(s) 1213, 1288
SspMI CTAG 2 cut(s) 347, 1113
StyD4I CCNGG 2 cut(s) 69, 338
StyI CCWWGG 2 cut(s) 11, 863
TaaI ACNGT 2 cut(s) 313, 1280
TaqI TCGA 2 cut(s) 1052, 1094
TasI AATT 9 cut(s) 60, 304, 477, 582, 602, 632, 994, 1024, 1048
TfiI GAWTC 2 cut(s) 553, 1237
Tru1I TTAA 3 cut(s) 303, 605, 1194
Tru9I TTAA 3 cut(s) 303, 605, 1194
TseFI GTSAC 2 cut(s) 32, 361
TseI GCWGC 4 cut(s) 16, 143, 146, 679
Tsp45I GTSAC 2 cut(s) 32, 361
TspDTI ATGAA 3 cut(s) 830, 896, 915
TspGWI ACGGA 2 cut(s) 20, 734
VpaK11BI GGWCC 2 cut(s) 404, 496
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 2 cut(s) 994, 1048
XceI RCATGY 2 cut(s) 190, 949
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 2 cut(s) 347, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.