Rh2BG408200

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018925
Physical Location & Seq
Reverse (-)
57871136 .. 57872880
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG408200.1

Sequence Viewer

Length: 936 bp
ATGTCCGTGACCTTGTTGAGGAAGCCAAGAAGCGAATTGTCTTCCTCGCCGTTTGTGTCGTTGGCCTCTCATATCTCATGTCCTATAATGACAAGCTCCAATGTTTTGGTCAACTTGCCTGATGCTGCTTCCTTGATTGTAATCCTTCGCTACTTATCTCTGGATTATGACATGCGAAGAAAAGCCGCAGCATACAACAATAAACCACCCCCAGCAAATAATGCTTTCCAAACCAAACCAATTCCATTGCCTAACACTGTTGGAAAGTCTGAGTGGAGAAGAAAAGTTAATTCTCCTGTTGTTGAGAAAGCTATAGAACACTTTACCAGGCATCTAGTTTCTGAGTTTGTGACAGATCTCTGGTATTCTCGTCTAACACCAGATAAACAAGGTCCAGAGGAACTGGTGTGCATTATCAATAGTGTTCTTGGGGAACTTGCAGCACGCATGAGGAATATAAATCTAATTGATCTTCTCACAAGGGACCTTATCAATCTCATATGCTCTCACTTGGTGCTTTTTCACATAACACAACCAAAGATTCCAAAGCAACAATCAGGATTTATGACAATTGAAAAACGAGATATGGAATTAAGACTCGTCTTGGATGCTGAAAACAAATTGCACCCTGCTCTATTTTCTGATGAAGCTGAGCACAAGGTTTTGCAGCATCTGATGGATGGCTTTATTTCTCTCACATTCAAGCGTGAAGATCTGCAATGCACTTTGTTCCGTTATATTGTCAGAGAGCTTCTTGCTTGTGCAGTAATGCGTCCTGTCCTAAACTTAGCTTGTCCAAGGTTTATTAATGAAAGAATTGAACAGTTGGTCATACAGATGAACGAATCTAAAGGTTTTACCACGGTACAAAGGAATCTCAATCCAAACAAGAGGAGTCGTCGAGTATTTCATCCAATCACTTCTCTAGGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

311

Amino Acids

35.56

Weight (kDa)

9.44

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PXA PF02194 98 - 276 9.2e-39 PXA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 2 cut(s) 867, 931
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 3 cut(s) 575, 703, 821
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 5 cut(s) 96, 311, 650, 751, 791
AluI AGCT 5 cut(s) 96, 311, 650, 751, 791
Alw21I GWGCWC 1 cut(s) 657
AlwNI CAGNNNCTG 1 cut(s) 673
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 4 cut(s) 125, 188, 440, 667
AseI ATTAAT 1 cut(s) 807
AspS9I GGNCC 2 cut(s) 392, 484
AvaII GGWCC 2 cut(s) 392, 484
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 4 cut(s) 112, 200, 452, 679
BccI CCATC 2 cut(s) 670, 674
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 328
BfaI CTAG 2 cut(s) 335, 926
BfmI CTRYAG 1 cut(s) 312
BglII AGATCT 2 cut(s) 355, 712
BisI GCNGC 5 cut(s) 126, 186, 189, 441, 668
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 5 cut(s) 127, 187, 190, 442, 669
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 2 cut(s) 392, 484
BmgT120I GGNCC 2 cut(s) 392, 484
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 4 cut(s) 112, 340, 598, 679
BpiI GAAGAC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 651
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 797, 861
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 408
Bse3DI GCAATG 2 cut(s) 245, 725
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 797, 861
BseGI GGATG 3 cut(s) 613, 685, 910
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 2 cut(s) 245, 725
BseMII CTCAG 3 cut(s) 261, 333, 642
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 907
BseXI GCAGC 4 cut(s) 112, 200, 452, 679
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 783
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 657
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 3 cut(s) 355, 469, 712
Bsp1720I GCTNAGC 1 cut(s) 651
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 3 cut(s) 262, 334, 643
BspLI GGNNCC 1 cut(s) 485
BsrDI GCAATG 2 cut(s) 245, 725
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 2 cut(s) 797, 861
BssMI GATC 3 cut(s) 355, 469, 712
BssT1I CCWWGG 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 259, 825, 865
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 5 cut(s) 270, 342, 651, 787, 933
BstDSI CCRYGG 1 cut(s) 861
BstENI CCTNNNNNAGG 1 cut(s) 16
BstF5I GGATG 3 cut(s) 613, 685, 910
BstKTI GATC 3 cut(s) 358, 472, 715
BstMBI GATC 3 cut(s) 355, 469, 712
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 4 cut(s) 112, 200, 452, 679
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 2 cut(s) 355, 712
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 2 cut(s) 355, 712
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 3 cut(s) 613, 685, 910
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 445
CaiI CAGNNNCTG 1 cut(s) 673
Cfr13I GGNCC 2 cut(s) 392, 484
CseI GACGC 1 cut(s) 761
Csp6I GTAC 2 cut(s) 866, 930
CviAII CATG 3 cut(s) 78, 172, 448
CviJI RGCY 9 cut(s) 25, 65, 96, 185, 311, 650, 684, 751, 791
CviKI_1 RGCY 9 cut(s) 25, 65, 96, 185, 311, 650, 684, 751, 791
CviQI GTAC 2 cut(s) 866, 930
DdeI CTNAG 5 cut(s) 270, 342, 651, 787, 933
DpnI GATC 3 cut(s) 357, 471, 714
DpnII GATC 3 cut(s) 355, 469, 712
DraIII CACNNNGTG 1 cut(s) 514
Eco130I CCWWGG 1 cut(s) 797
Eco47I GGWCC 2 cut(s) 392, 484
EcoNI CCTNNNNNAGG 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 797
ErhI CCWWGG 1 cut(s) 797
FaeI CATG 3 cut(s) 81, 175, 451
FaqI GGGAC 1 cut(s) 497
FatI CATG 3 cut(s) 77, 171, 447
FauNDI CATATG 1 cut(s) 500
Fnu4HI GCNGC 5 cut(s) 126, 186, 189, 441, 668
FokI GGATG 3 cut(s) 620, 692, 897
Fsp4HI GCNGC 5 cut(s) 126, 186, 189, 441, 668
FspBI CTAG 2 cut(s) 335, 926
GluI GCNGC 5 cut(s) 126, 186, 189, 441, 668
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 65
HgaI GACGC 1 cut(s) 761
Hin1II CATG 3 cut(s) 81, 175, 451
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 5 cut(s) 541, 597, 845, 874, 895
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 271, 343, 643, 675, 746
Hpy188III TCNNGA 3 cut(s) 161, 395, 558
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 903
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 259, 825, 865
HpyCH4V TGCA 7 cut(s) 411, 440, 625, 667, 718, 723, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 5 cut(s) 270, 342, 651, 787, 933
Hsp92II CATG 3 cut(s) 81, 175, 451
Kzo9I GATC 3 cut(s) 355, 469, 712
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 4 cut(s) 112, 200, 452, 679
LweI GCATC 4 cut(s) 112, 340, 598, 679
MaeI CTAG 2 cut(s) 335, 926
MaeIII GTNAC 2 cut(s) 7, 349
MalI GATC 3 cut(s) 357, 471, 714
MboI GATC 3 cut(s) 355, 469, 712
MboII GAAGA 5 cut(s) 33, 189, 291, 464, 722
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 2 cut(s) 355, 712
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 8 cut(s) 35, 240, 289, 465, 570, 590, 620, 816
MlyI GAGTC 2 cut(s) 591, 904
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 6 cut(s) 12, 55, 76, 391, 444, 885
MseI TTAA 3 cut(s) 288, 593, 807
MslI CAYNNNNRTG 1 cut(s) 836
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeI CATATG 1 cut(s) 500
NdeII GATC 3 cut(s) 355, 469, 712
NlaIII CATG 3 cut(s) 81, 175, 451
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 7, 349
NspI RCATGY 1 cut(s) 175
PfeI GAWTC 3 cut(s) 541, 845, 874
PkrI GCNGC 5 cut(s) 127, 187, 190, 442, 669
PleI GAGTC 2 cut(s) 591, 903
PpsI GAGTC 2 cut(s) 591, 903
PpuMI RGGWCCY 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 485
PspPI GGNCC 2 cut(s) 392, 484
PspPPI RGGWCCY 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 673
PsuI RGATCY 2 cut(s) 355, 712
RsaI GTAC 2 cut(s) 867, 931
RsaNI GTAC 2 cut(s) 866, 930
RseI CAYNNNNRTG 1 cut(s) 836
SaqAI TTAA 3 cut(s) 288, 593, 807
SatI GCNGC 5 cut(s) 126, 186, 189, 441, 668
Sau3AI GATC 3 cut(s) 355, 469, 712
Sau96I GGNCC 2 cut(s) 392, 484
SchI GAGTC 2 cut(s) 591, 904
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 657
SfaNI GCATC 4 cut(s) 112, 340, 598, 679
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 2 cut(s) 392, 484
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 8 cut(s) 35, 240, 289, 465, 570, 590, 620, 816
SsiI CCGC 1 cut(s) 186
SspMI CTAG 2 cut(s) 335, 926
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 797
TaaI ACNGT 3 cut(s) 259, 825, 865
TaqI TCGA 1 cut(s) 901
TasI AATT 8 cut(s) 35, 240, 289, 465, 570, 590, 620, 816
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 3 cut(s) 541, 845, 874
Tru1I TTAA 3 cut(s) 288, 593, 807
Tru9I TTAA 3 cut(s) 288, 593, 807
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 2 cut(s) 7, 349
TseI GCWGC 4 cut(s) 125, 188, 440, 667
Tsp45I GTSAC 2 cut(s) 7, 349
TspDTI ATGAA 4 cut(s) 660, 825, 854, 899
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 392, 484
VspI ATTAAT 1 cut(s) 807
XagI CCTNNNNNAGG 1 cut(s) 16
XceI RCATGY 1 cut(s) 175
XspI CTAG 2 cut(s) 335, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.