pycom09g12800

PXA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0018925
Physical Location & Seq
Forward (+)
11361416 .. 11363181
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGAGCACGCAGAGGCAGCATGTGGCCGTCCGGGACCTCGTTGAGGAAGCCAAGAAGCGGATTGTCTTTCTCGCCATTTGCGTCGTTGGCTTGTCATACCTTATGTCCTTGACGAGCTCCTCTGTCTGGGTGAACTTGCCTGCTGCCGCCTCGTTGATTGTCATAGTTCGTTATTTGTCACTAGATTATGACATGCGAAGAAAAGCTGCAGCATACAACAGCAAGCCACCATCAGCAAATACTACTTCTCAAAACAAACCTATTCAGTGGCCTAAAACTAGTCAAAAGTCTGAGTGGAGAAGGAAAGTTAATTCTCCTGTTGTCGAGGAAGCTATTGATCACTTCACCCGGCATCTAGTTTCTGAGTTTGTGACCGATCTCTGGTATTCTCGTCTAACACCGGATAGACAAGGTCCAGAAGAACTCGCGTGCATCATGAATGGTGTTCTTGGGGAAATTTCAGCACGCATGAGGAATATAAATCTGATCGATCTTCTCACAAGGGATCTTATTAATCTCATATGCTTTCACTTGGAGCTTTTCCGCATAGCTCAAGCAAAGATTCAAACGCAACAATCGGGATGCCTGACAGTTGAAAAACGAGATATGGAAATAAGACTTGTCTTGTCTGCTGAAAACAAATTGCACCCTGCTTTGTTTTCTGCTGAATCTGAGCACAAGGTCTTGCAGCATTTGATGGATGGCCTGATCTCATTCTCATTCAGGCCTGAAGATCTGCAATGCACTCTCTTCCGTTATATTGTCAGAGAACTACTTGCTTGTGCAGTAATGCGACCTGTCCTAAACTTGGCTAGTCCCAGGTTTATTAATGAAAGAATTGAATTGTTGGTCATTAAAATGACCGAGCCAAAAGGTGTTATTGCGGTACAAGAGGCATCTCAGTCCAAACCAGAGGGGCCCTCAAAGATATCATCTGATCGATCATCCCATACAACTTTTCTAGGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nexin_C PX PXA

Protein Analysis

324

Amino Acids

36.62

Weight (kDa)

9.0

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PXA PF02194 105 - 281 2.2e-41 PXA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018925)

Species Orthologous Gene IDs
pyrus_communis pycom09g12800
rosa_multiflora Rmu_co8200004.1_g000001 Rmu_sc0000193.1_g000021
rosa_roxburghii Rroxscaffold_2G00106170
rosa_samantha Rh2AG400500 Rh2BG408200 Rh2CG386800 Rh2DG421000
rosa_wichuraiana Rw2G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 428
AciI CCGC 4 cut(s) 58, 147, 544, 884
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 1 cut(s) 888
AfiI CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
AgsI TTSAA 3 cut(s) 566, 596, 842
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 818
AluBI AGCT 5 cut(s) 117, 206, 332, 538, 551
AluI AGCT 5 cut(s) 117, 206, 332, 538, 551
Alw21I GWGCWC 3 cut(s) 8, 119, 678
AlwI GGATC 1 cut(s) 513
AoxI GGCC 5 cut(s) 24, 269, 703, 725, 917
ApaI GGGCCC 1 cut(s) 921
ApeKI GCWGC 5 cut(s) 16, 143, 206, 209, 688
ApoI RAATTY 1 cut(s) 456
AseI ATTAAT 2 cut(s) 513, 828
AspS9I GGNCC 4 cut(s) 34, 413, 917, 918
AsuC2I CCSGG 2 cut(s) 32, 349
AsuHPI GGTGA 2 cut(s) 142, 337
AvaII GGWCC 2 cut(s) 34, 413
BaeGI GKGCMC 1 cut(s) 921
BanII GRGCYC 2 cut(s) 119, 921
Bbv12I GWGCWC 3 cut(s) 8, 119, 678
BbvI GCAGC 5 cut(s) 28, 130, 193, 221, 700
BccI CCATC 3 cut(s) 238, 691, 695
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 820
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 2 cut(s) 32, 349
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 5 cut(s) 182, 279, 356, 813, 962
BfmI CTRYAG 1 cut(s) 207
BglII AGATCT 1 cut(s) 733
BisI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
BlsI GCNGC 6 cut(s) 18, 145, 148, 208, 211, 690
Bme1390I CCNGG 3 cut(s) 32, 349, 820
Bme18I GGWCC 2 cut(s) 34, 413
BmgT120I GGNCC 4 cut(s) 34, 413, 917, 918
BmiI GGNNCC 3 cut(s) 35, 918, 919
BmrFI CCNGG 3 cut(s) 32, 349, 820
BmsI GCATC 4 cut(s) 361, 441, 572, 905
BplI GAGNNNNNCTC 2 cut(s) 905, 937
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 2 cut(s) 32, 349
Bsa29I ATCGAT 2 cut(s) 489, 940
BsaJI CCNNGG 1 cut(s) 818
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
Bse3DI GCAATG 1 cut(s) 746
BseBI CCWGG 1 cut(s) 820
BseCI ATCGAT 2 cut(s) 489, 940
BseDI CCNNGG 1 cut(s) 818
BseGI GGATG 3 cut(s) 587, 706, 944
BseLI CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
BseMI GCAATG 1 cut(s) 746
BseMII CTCAG 4 cut(s) 282, 354, 663, 914
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 921
BseXI GCAGC 5 cut(s) 28, 130, 193, 221, 700
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 5 cut(s) 26, 271, 705, 727, 919
BshVI ATCGAT 2 cut(s) 489, 940
BsiHKAI GWGCWC 3 cut(s) 8, 119, 678
BsiSI CCGG 3 cut(s) 31, 349, 401
BslFI GGGAC 2 cut(s) 47, 801
BslI CCNNNNNNNGG 5 cut(s) 43, 57, 126, 381, 808
BsmFI GGGAC 2 cut(s) 47, 801
BsnI GGCC 5 cut(s) 26, 271, 705, 727, 919
Bsp120I GGGCCC 1 cut(s) 917
Bsp1286I GDGCHC 4 cut(s) 8, 119, 678, 921
Bsp143I GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
BspACI CCGC 4 cut(s) 58, 147, 544, 884
BspANI GGCC 5 cut(s) 26, 271, 705, 727, 919
BspCNI CTCAG 4 cut(s) 283, 355, 664, 913
BspDI ATCGAT 2 cut(s) 489, 940
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 3 cut(s) 35, 918, 919
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 746
BssECI CCNNGG 1 cut(s) 818
BssMI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 1 cut(s) 755
BstC8I GCNNGC 5 cut(s) 8, 141, 224, 430, 466
BstDEI CTNAG 5 cut(s) 291, 363, 672, 900, 969
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 587, 706, 944
BstFNI CGCG 1 cut(s) 428
BstKTI GATC 9 cut(s) 340, 379, 489, 493, 508, 711, 736, 940, 944
BstMBI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
BstMWI GCNNNNNNNGC 2 cut(s) 16, 87
BstNI CCWGG 1 cut(s) 820
BstNSI RCATGY 2 cut(s) 23, 196
BstSCI CCNGG 3 cut(s) 30, 347, 818
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 921
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 5 cut(s) 28, 130, 193, 221, 700
BstX2I RGATCY 2 cut(s) 505, 733
BstYI RGATCY 2 cut(s) 505, 733
Bsu15I ATCGAT 2 cut(s) 489, 940
BsuRI GGCC 5 cut(s) 26, 271, 705, 727, 919
BsuTUI ATCGAT 2 cut(s) 489, 940
BtsCI GGATG 3 cut(s) 587, 706, 944
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 5 cut(s) 8, 141, 224, 430, 466
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 4 cut(s) 34, 413, 917, 918
ClaI ATCGAT 2 cut(s) 489, 940
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 887
CviAII CATG 4 cut(s) 20, 193, 436, 469
CviQI GTAC 1 cut(s) 887
DdeI CTNAG 5 cut(s) 291, 363, 672, 900, 969
DpnI GATC 9 cut(s) 339, 378, 488, 492, 507, 710, 735, 939, 943
DpnII GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 755
EarI CTCTTC 1 cut(s) 755
Ecl136II GAGCTC 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 727
Eco24I GRGCYC 2 cut(s) 119, 921
Eco32I GATATC 1 cut(s) 930
Eco47I GGWCC 2 cut(s) 34, 413
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 750
EcoICRI GAGCTC 1 cut(s) 117
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 3 cut(s) 34, 917, 918
EcoRII CCWGG 1 cut(s) 818
EcoRV GATATC 1 cut(s) 930
EcoT38I GRGCYC 2 cut(s) 119, 921
FaeI CATG 4 cut(s) 23, 196, 439, 472
FaqI GGGAC 2 cut(s) 47, 801
FatI CATG 4 cut(s) 19, 192, 435, 468
FauNDI CATATG 1 cut(s) 521
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
FokI GGATG 3 cut(s) 594, 713, 931
FriOI GRGCYC 2 cut(s) 119, 921
Fsp4HI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
FspBI CTAG 5 cut(s) 182, 279, 356, 813, 962
GluI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
HaeIII GGCC 5 cut(s) 26, 271, 705, 727, 919
HapII CCGG 3 cut(s) 31, 349, 401
HgaI GACGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 23, 196, 439, 472
HinfI GANTC 2 cut(s) 562, 668
HpaII CCGG 3 cut(s) 31, 349, 401
HphI GGTGA 2 cut(s) 142, 337
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 6 cut(s) 292, 364, 486, 673, 767, 937
Hpy188III TCNNGA 3 cut(s) 416, 436, 579
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4V TGCA 7 cut(s) 209, 432, 646, 688, 739, 744, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 87
HpyF3I CTNAG 5 cut(s) 291, 363, 672, 900, 969
Hsp92II CATG 4 cut(s) 23, 196, 439, 472
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
LmnI GCTCC 2 cut(s) 122, 535
Lsp1109I GCAGC 5 cut(s) 28, 130, 193, 221, 700
LweI GCATC 4 cut(s) 361, 441, 572, 905
MaeI CTAG 5 cut(s) 182, 279, 356, 813, 962
MaeIII GTNAC 2 cut(s) 177, 370
MalI GATC 9 cut(s) 339, 378, 488, 492, 507, 710, 735, 939, 943
MboI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
MboII GAAGA 5 cut(s) 210, 431, 485, 742, 743
MflI RGATCY 2 cut(s) 505, 733
MhlI GDGCHC 4 cut(s) 8, 119, 678, 921
MluCI AATT 5 cut(s) 310, 456, 641, 837, 842
MseI TTAA 4 cut(s) 309, 513, 828, 855
MslI CAYNNNNRTG 1 cut(s) 857
MspI CCGG 3 cut(s) 31, 349, 401
MspR9I CCNGG 3 cut(s) 32, 349, 820
MvaI CCWGG 1 cut(s) 820
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 16, 87
NciI CCSGG 2 cut(s) 32, 349
NdeI CATATG 1 cut(s) 521
NdeII GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
NlaIII CATG 4 cut(s) 23, 196, 439, 472
NlaIV GGNNCC 3 cut(s) 35, 918, 919
NmuCI GTSAC 2 cut(s) 177, 370
NspI RCATGY 2 cut(s) 23, 196
PagI TCATGA 1 cut(s) 435
PceI AGGCCT 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 2 cut(s) 562, 668
PflFI GACNNNGTC 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 6 cut(s) 18, 145, 148, 208, 211, 690
PpuMI RGGWCCY 1 cut(s) 34
PshBI ATTAAT 2 cut(s) 513, 828
Psp124BI GAGCTC 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 818
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 3 cut(s) 35, 918, 919
PspOMI GGGCCC 1 cut(s) 917
PspPI GGNCC 4 cut(s) 34, 413, 917, 918
PspPPI RGGWCCY 1 cut(s) 34
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 2 cut(s) 505, 733
PsyI GACNNNGTC 1 cut(s) 411
RsaI GTAC 1 cut(s) 888
RsaNI GTAC 1 cut(s) 887
RseI CAYNNNNRTG 1 cut(s) 857
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 4 cut(s) 309, 513, 828, 855
SatI GCNGC 6 cut(s) 17, 144, 147, 207, 210, 689
Sau3AI GATC 9 cut(s) 337, 376, 486, 490, 505, 708, 733, 937, 941
Sau96I GGNCC 4 cut(s) 34, 413, 917, 918
ScrFI CCNGG 3 cut(s) 32, 349, 820
SduI GDGCHC 4 cut(s) 8, 119, 678, 921
SfaNI GCATC 4 cut(s) 361, 441, 572, 905
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 2 cut(s) 34, 413
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 5 cut(s) 310, 456, 641, 837, 842
SseBI AGGCCT 1 cut(s) 727
SsiI CCGC 4 cut(s) 58, 147, 544, 884
SspMI CTAG 5 cut(s) 182, 279, 356, 813, 962
SstI GAGCTC 1 cut(s) 119
StuI AGGCCT 1 cut(s) 727
StyD4I CCNGG 3 cut(s) 30, 347, 818
TaaI ACNGT 1 cut(s) 592
TaqI TCGA 3 cut(s) 324, 489, 940
TaqII GACCGA 2 cut(s) 389, 878
TasI AATT 5 cut(s) 310, 456, 641, 837, 842
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 562, 668
Tru1I TTAA 4 cut(s) 309, 513, 828, 855
Tru9I TTAA 4 cut(s) 309, 513, 828, 855
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 2 cut(s) 177, 370
TseI GCWGC 5 cut(s) 16, 143, 206, 209, 688
Tsp45I GTSAC 2 cut(s) 177, 370
TspDTI ATGAA 2 cut(s) 452, 846
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 272
Tth111I GACNNNGTC 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 34, 413
VspI ATTAAT 2 cut(s) 513, 828
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 1 cut(s) 456
XceI RCATGY 2 cut(s) 23, 196
XspI CTAG 5 cut(s) 182, 279, 356, 813, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.