Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010112

Physical Location & Seq

Genomic Coordinates Forward (+)

15215313 .. 15218983

Gene Structure 3671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15360.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCAGCCCTATGGAATACAATCGATGTTGAAGGAGGGCCACAAGCACCTCTCCGGTTTGGACGAGGCGGTAGTGAAGAACATCGATGCCTGCAAGCAACTCTCCACCATCACCAGAACTTCTCTGGGTCCCAATGGTATGAATAAGATGGTAATCAATCACTTGGACAAGCTATTTGTGACGAATGATGCCGCCACGATTGTGAACGAACTGGAGGTTCAGCATCCTGCTGCCAAGATTTTGGTTTTGGCAGGCAGGGCTCAGCAGGAAGAAATCGGCGATGGTGCTAATCTCACCATTTCTTTTGCCGGAGAGCTCCTTCAAAACGCAGAGGAGCTTATAAGGATGGGCCTGCACCCAAGTGAGATAATTAGTGGATACAATAAAGCCATCAAAAAGACGATTGAAATCTTAGATGAATTGGTTGAGGAAGGTTCCGATATCATGGATGTGCGCAACAAAGAACAAGTGGTTTCTAGAATGAGAGCTGCTGTTGCCAGCAAGCAATTCGGCCAAGAAGATATCTTGTCCTCACTTGTTGCCGATGCATGTATACAAGTATGCCCCAAGAACCCAGCAAACTTCAATGTCGATAATGTACGTGTTGCGAAGATTGCAGGAGGAGGATTGCATAATTGTGCAGTAGTACGAGGTATGGTGTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAATGGAGAAGGCCAAGGTTGCTGTGTTTGCTGGTGGAGTTGATACCTCTGCAACTGAGACCAAAGGAACTGTTCTAATTCATACCGCTAACCAGCTTGAAAATTATGCAAAAACTGAAGAAGCTAAAATTGAGGAGCTCGTTAAAGCAGTTGCAGATTCAGGTGCCAAAGTAATTGTCAGTGGAGCTGCAGTTGGAGAGATGGCACTACATTTCTGTGAGCGGTACAATCCAGGCTCATGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

313

Amino Acids

33.49

Weight (kDa)

5.81

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03960
fragaria_vesca	FvH4_6g27660 FvH4_6g27660
malus_domestica	MD09G1235600.v1.1 MD17G1264300.v1.1 MD17G1264600.v1.1
prunus_persica	Prupe.3G113600_v2.0.a1 Prupe.3G114000_v2.0.a1
pyrus_communis	pycom09g15360 pycom17g26410 pycom17g26440
rosa_chinensis	RchiOBHm_Chr2g0130701
rosa_laevigata	RLG00000019142
rosa_multiflora	Rmu_co8506905.1_g000001 Rmu_sc0002279.1_g000053
rosa_roxburghii	Rroxscaffold_2G00113700
rosa_rugosa	Rorug02G0292700
rosa_samantha	Rh2AG344300 Rh2BG352600 Rh2DG370700
rosa_wichuraiana	Rw2G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
Acc16I	TGCGCA	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	913
AccI	GTMKAC	1 cut(s)	553
AciI	CCGC	4 cut(s)	68, 192, 777, 913
AcoI	YGGCCR	1 cut(s)	511
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	3 cut(s)	600, 648, 917
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	6 cut(s)	31, 323, 407, 586, 664, 791
AjnI	CCWGG	1 cut(s)	922
AleI	CACNNNNGTG	2 cut(s)	200, 360
AluBI	AGCT	8 cut(s)	172, 316, 337, 488, 787, 815, 829, 878
AluI	AGCT	8 cut(s)	172, 316, 337, 488, 787, 815, 829, 878
Alw21I	GWGCWC	2 cut(s)	318, 831
Alw26I	GTCTC	1 cut(s)	743
AoxI	GGCC	4 cut(s)	37, 349, 511, 702
ApeKI	GCWGC	4 cut(s)	4, 230, 488, 878
ArsI	GACNNNNNNTTYG	4 cut(s)	158, 190, 852, 884
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	37, 128, 349
AsuHPI	GGTGA	2 cut(s)	103, 286
AvaII	GGWCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	3 cut(s)	262, 318, 831
Bbv12I	GWGCWC	2 cut(s)	318, 831
BbvI	GCAGC	4 cut(s)	16, 217, 475, 865
BccI	CCATC	6 cut(s)	116, 142, 275, 340, 398, 886
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	924
BciVI	GTATCC	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	879
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	5 cut(s)	5, 192, 231, 489, 879
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	5 cut(s)	6, 193, 232, 490, 880
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	3 cut(s)	37, 128, 349
BmiI	GGNNCC	4 cut(s)	129, 130, 436, 856
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	5 cut(s)	76, 178, 232, 535, 661
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	261
Bsa29I	ATCGAT	2 cut(s)	23, 84
BsaAI	YACGTR	1 cut(s)	602
BsaBI	GATNNNNATC	2 cut(s)	152, 407
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	705
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bse1I	ACTGG	1 cut(s)	216
Bse8I	GATNNNNATC	2 cut(s)	152, 407
BseBI	CCWGG	1 cut(s)	924
BseCI	ATCGAT	2 cut(s)	23, 84
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	3 cut(s)	223, 351, 454
BseJI	GATNNNNATC	2 cut(s)	152, 407
BseMII	CTCAG	2 cut(s)	275, 738
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	3 cut(s)	347, 636, 839
BseXI	GCAGC	4 cut(s)	16, 217, 475, 865
BseYI	CCCAGC	1 cut(s)	574
BsgI	GTGCAG	2 cut(s)	338, 660
BshFI	GGCC	4 cut(s)	39, 351, 513, 704
BshNI	GGYRCC	1 cut(s)	854
BshVI	ATCGAT	2 cut(s)	23, 84
BsiHKAI	GWGCWC	2 cut(s)	318, 831
BsiSI	CCGG	2 cut(s)	54, 309
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	4 cut(s)	39, 351, 513, 704
Bso31I	GGTCTC	1 cut(s)	743
Bsp1286I	GDGCHC	3 cut(s)	262, 318, 831
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	4 cut(s)	68, 192, 777, 913
BspANI	GGCC	4 cut(s)	39, 351, 513, 704
BspCNI	CTCAG	2 cut(s)	274, 739
BspDI	ATCGAT	2 cut(s)	23, 84
BspLI	GGNNCC	4 cut(s)	129, 130, 436, 856
BspMAI	CTGCAG	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	743
BsrBI	CCGCTC	1 cut(s)	913
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	705
BssNAI	GTATAC	1 cut(s)	554
BssT1I	CCWWGG	1 cut(s)	705
Bst1107I	GTATAC	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	1 cut(s)	763
BstBAI	YACGTR	1 cut(s)	602
BstC8I	GCNNGC	6 cut(s)	91, 95, 253, 353, 499, 503
BstDEI	CTNAG	3 cut(s)	261, 412, 747
BstF5I	GGATG	3 cut(s)	223, 351, 454
BstHHI	GCGC	1 cut(s)	456
BstMAI	GTCTC	1 cut(s)	743
BstMWI	GCNNNNNNNGC	6 cut(s)	257, 494, 614, 710, 719, 933
BstNI	CCWGG	1 cut(s)	924
BstNSI	RCATGY	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	922
BstSFI	CTRYAG	1 cut(s)	879
BstV1I	GCAGC	4 cut(s)	16, 217, 475, 865
BstXI	CCANNNNNNTGG	2 cut(s)	241, 930
BstZ17I	GTATAC	1 cut(s)	554
Bsu15I	ATCGAT	2 cut(s)	23, 84
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	39, 351, 513, 704
BsuTUI	ATCGAT	2 cut(s)	23, 84
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	223, 351, 454
BtsIMutI	CAGTG	1 cut(s)	877
Cac8I	GCNNGC	6 cut(s)	91, 95, 253, 353, 499, 503
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	3 cut(s)	37, 128, 349
ClaI	ATCGAT	2 cut(s)	23, 84
Csp6I	GTAC	3 cut(s)	599, 647, 916
CviAII	CATG	3 cut(s)	445, 549, 930
CviQI	GTAC	3 cut(s)	599, 647, 916
DdeI	CTNAG	3 cut(s)	261, 412, 747
EaeI	YGGCCR	1 cut(s)	511
Ecl136II	GAGCTC	2 cut(s)	316, 829
Eco130I	CCWWGG	1 cut(s)	705
Eco24I	GRGCYC	3 cut(s)	262, 318, 831
Eco31I	GGTCTC	1 cut(s)	743
Eco32I	GATATC	2 cut(s)	442, 523
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	2 cut(s)	316, 829
Eco57I	CTGAAG	1 cut(s)	828
EcoICRI	GAGCTC	2 cut(s)	316, 829
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	922
EcoRV	GATATC	2 cut(s)	442, 523
EcoT14I	CCWWGG	1 cut(s)	705
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	3 cut(s)	262, 318, 831
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	3 cut(s)	448, 552, 933
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	444, 548, 929
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	5, 192, 231, 489, 879
FokI	GGATG	3 cut(s)	210, 358, 461
FriOI	GRGCYC	3 cut(s)	262, 318, 831
Fsp4HI	GCNGC	5 cut(s)	5, 192, 231, 489, 879
FspBI	CTAG	1 cut(s)	477
FspI	TGCGCA	1 cut(s)	455
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	5 cut(s)	5, 192, 231, 489, 879
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	4 cut(s)	39, 351, 513, 704
HapII	CCGG	2 cut(s)	54, 309
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	3 cut(s)	448, 552, 933
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	1 cut(s)	848
HpaII	CCGG	2 cut(s)	54, 309
HphI	GGTGA	2 cut(s)	103, 286
Hpy166II	GTNNAC	2 cut(s)	205, 554
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	2 cut(s)	205, 554
HpyAV	CCTTC	4 cut(s)	25, 329, 425, 694
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4IV	ACGT	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	6 cut(s)	257, 494, 614, 710, 719, 933
HpyF3I	CTNAG	3 cut(s)	261, 412, 747
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	3 cut(s)	448, 552, 933
HspAI	GCGC	1 cut(s)	454
KflI	GGGWCCC	1 cut(s)	128
LmnI	GCTCC	4 cut(s)	321, 334, 826, 875
Lsp1109I	GCAGC	4 cut(s)	16, 217, 475, 865
LweI	GCATC	5 cut(s)	76, 178, 232, 535, 661
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	1 cut(s)	178
MbiI	CCGCTC	1 cut(s)	913
MboII	GAAGA	5 cut(s)	88, 281, 530, 622, 821
MhlI	GDGCHC	3 cut(s)	262, 318, 831
MluCI	AATT	8 cut(s)	369, 419, 506, 634, 768, 793, 819, 864
MmeI	TCCRAC	1 cut(s)	865
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	1 cut(s)	834
MslI	CAYNNNNRTG	5 cut(s)	200, 360, 449, 636, 906
MspI	CCGG	2 cut(s)	54, 309
MspR9I	CCNGG	1 cut(s)	924
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	6 cut(s)	257, 494, 614, 710, 719, 933
NlaIII	CATG	3 cut(s)	448, 552, 933
NlaIV	GGNNCC	4 cut(s)	129, 130, 436, 856
NmuCI	GTSAC	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	455
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	552
OliI	CACNNNNGTG	2 cut(s)	200, 360
PfeI	GAWTC	1 cut(s)	848
PkrI	GCNGC	5 cut(s)	6, 193, 232, 490, 880
Ppu21I	YACGTR	1 cut(s)	602
PpuMI	RGGWCCY	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	341
Psp124BI	GAGCTC	2 cut(s)	318, 831
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	922
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	4 cut(s)	129, 130, 436, 856
PspPI	GGNCC	3 cut(s)	37, 128, 349
PspPPI	RGGWCCY	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	883
RsaI	GTAC	3 cut(s)	600, 648, 917
RsaNI	GTAC	3 cut(s)	599, 647, 916
RseI	CAYNNNNRTG	5 cut(s)	200, 360, 449, 636, 906
SacI	GAGCTC	2 cut(s)	318, 831
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	5 cut(s)	5, 192, 231, 489, 879
Sau96I	GGNCC	3 cut(s)	37, 128, 349
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	3 cut(s)	262, 318, 831
SfaNI	GCATC	5 cut(s)	76, 178, 232, 535, 661
SfcI	CTRYAG	1 cut(s)	879
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	5 cut(s)	200, 360, 449, 636, 906
Sse9I	AATT	8 cut(s)	369, 419, 506, 634, 768, 793, 819, 864
SsiI	CCGC	4 cut(s)	68, 192, 777, 913
SspMI	CTAG	1 cut(s)	477
SstI	GAGCTC	2 cut(s)	318, 831
StyD4I	CCNGG	1 cut(s)	922
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	1 cut(s)	763
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	3 cut(s)	23, 84, 591
TasI	AATT	8 cut(s)	369, 419, 506, 634, 768, 793, 819, 864
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	848
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	4, 230, 488, 878
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	155, 432, 761
TspRI	CASTG	1 cut(s)	877
VpaK11BI	GGWCC	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	476
XceI	RCATGY	1 cut(s)	552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.