Rh2DG370700
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010112
Physical Location & Seq
Reverse (-)
52699019 .. 52705920
6902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG370700.1

Sequence Viewer

Length: 1293 bp
ATGTCGCAGTACGGAATACAATCAATGCTGAAGGAGGGGCACAAGCACCTCTCCGGTTTGGACGAAGCGGTGGTCAAGAACATCGAGGCCTGCAAGCAACTCTCCACCATCATTCGCACTTCTCTCGGTCCCAACGGCATGAATAAGATGGTAATCAATCACTTAGATAAGCTCTTTGTCACAAATGATGGTGCCACCATTGTTAATGAACTCGAGGTTCAGCACCCTGCCGCCAAGCTTTTGGTTTTGGCAGGCAAGGCTCAACAGGAGGAGATTGGCGATGGTGCTAATCTCACCATTTCGTTCGCCGGAGAGCTGCTTTCGCATGCCCAGGAGCTTATCAGGATGGGCTTGCACCCCAGTGAGATCATTAGTGGATACACGAAAGCAATTAAGAAGACAATTGAAATCTTGGAAGAACTGGTTGAGGAAGGTTCTGAGACTATGGACGTGCGTAATAAAGAACAAGTGGTTAAAAGAATGAAAGCACCGGTAGCCAGCAAGCAGTTTGGACAAGAAGAGATATTGTCCTCACTTGTTGCCGATGCATGTATACAAGTATGCCCCAAGAACCCAGCAAACTTTAATGTGGATAATGTACGTGTGGCAAAGTTCTTGGGAGGGGGTTTGCATAATTGTACTGTAGTTCGAGGTATGGCATTAAAGACTGATGCTGTTGGCAGCATCAAGAAAATGCAGAAGGCCAAGGTTGCTGTGTTTGCTGGTGGTGTTGATACCTCTGCAACTGAGACCAAGGGAACTGTCTTAATTCATACTGCTGATCAGCTAGAAAATTATGCAAAAACTGAAGAAGCTAAAGTTGAGGAGCTCATCAAAGCAGTTGCAGATTCAGGAGCCAAAGTAATTGTCAGTGGAGCAGCAGTTGGAGAAATGGCATTACATTTCTGTGAGCGTTACAAGCTCATGGTGCTGAAAATCAGTTCAAAATTTGAATTGAGACGATTTTGCCGTACAGTTGGTGCTGTTGCTATGTTGAAGCTTTGCCAGCCTAACCCAGATGATCTTGGATATGTTGACTCTGTCTCAGTTGAGGAAATTGCTGGTGTTAGGGTTACTATTGTGAAGAATGAAGAAGGTGGTAACTCTGTATCCACTGTGCTTCTAAGGGCAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTGATGATGGGGTGAACACTTACAAGGCTATGTGCAGGGATAGCCGTATTGTTCCTGGAGCTGCAGCTACTGAAATTGAGTTAGCCAGGAGGGTCAAGGAGTTCTCTTTCAAAGAAACAGGGTGA

Protein Analysis

430

Amino Acids

46.47

Weight (kDa)

6.07

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 34 - 428 1.2e-118 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 553
AciI CCGC 2 cut(s) 68, 231
AcsI RAATTY 1 cut(s) 947
AcuI CTGAAG 2 cut(s) 50, 828
AfaI GTAC 5 cut(s) 11, 600, 640, 973, 1135
AflIII ACRYGT 1 cut(s) 601
AgeI ACCGGT 1 cut(s) 490
AgsI TTSAA 6 cut(s) 407, 945, 953, 997, 1160, 1279
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 3 cut(s) 330, 1222, 1253
AleI CACNNNNGTG 1 cut(s) 360
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 4 cut(s) 434, 743, 952, 1048
AlwNI CAGNNNCTG 1 cut(s) 1238
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 2 cut(s) 87, 702
ApeKI GCWGC 5 cut(s) 316, 681, 878, 1229, 1232
ApoI RAATTY 1 cut(s) 947
ArsI GACNNNNNNTTYG 4 cut(s) 57, 89, 852, 884
AsiGI ACCGGT 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 286, 1192
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 42
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 831
BbvI GCAGC 5 cut(s) 303, 693, 890, 1216, 1244
BccI CCATC 6 cut(s) 116, 142, 182, 275, 340, 1169
BceAI ACGGC 3 cut(s) 151, 954, 1197
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 3 cut(s) 332, 1224, 1255
BciVI GTATCC 2 cut(s) 371, 1120
BclI TGATCA 1 cut(s) 781
BcoDI GTCTC 4 cut(s) 434, 743, 952, 1048
BfaI CTAG 1 cut(s) 788
BfmI CTRYAG 2 cut(s) 642, 1230
BfuI GTATCC 2 cut(s) 371, 1120
BisI GCNGC 6 cut(s) 231, 317, 682, 879, 1230, 1233
BlsI GCNGC 6 cut(s) 232, 318, 683, 880, 1231, 1234
BmcAI AGTACT 1 cut(s) 1135
Bme1390I CCNGG 3 cut(s) 332, 1224, 1255
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 3 cut(s) 130, 193, 856
BmrFI CCNGG 3 cut(s) 332, 1224, 1255
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 3 cut(s) 535, 661, 693
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 1245
BsaAI YACGTR 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 330, 705, 753
BsaWI WCCGGW 2 cut(s) 53, 490
BsaXI ACNNNNNCTCC 4 cut(s) 846, 867, 876, 897
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 2 cut(s) 360, 426
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 3 cut(s) 332, 1224, 1255
BseDI CCNNGG 3 cut(s) 330, 705, 753
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 152
BseMII CTCAG 3 cut(s) 429, 738, 1059
BseNI ACTGG 2 cut(s) 360, 426
BseRI GAGGAG 2 cut(s) 284, 839
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 5 cut(s) 303, 693, 890, 1216, 1244
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 1222
BshFI GGCC 2 cut(s) 89, 704
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 831
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 3 cut(s) 54, 309, 491
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 4 cut(s) 434, 743, 952, 1048
BsmBI CGTCTC 1 cut(s) 952
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 89, 704
Bso31I GGTCTC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 42, 831
Bsp143I GATC 3 cut(s) 366, 781, 1021
BspACI CCGC 2 cut(s) 68, 231
BspANI GGCC 2 cut(s) 89, 704
BspCNI CTCAG 3 cut(s) 430, 739, 1058
BspLI GGNNCC 3 cut(s) 130, 193, 856
BspMAI CTGCAG 1 cut(s) 1234
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 743
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 2 cut(s) 360, 426
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 330, 705, 753
BssMI GATC 3 cut(s) 366, 781, 1021
BssNAI GTATAC 1 cut(s) 554
BssT1I CCWWGG 2 cut(s) 705, 753
Bst1107I GTATAC 1 cut(s) 554
Bst2UI CCWGG 3 cut(s) 332, 1224, 1255
Bst4CI ACNGT 4 cut(s) 643, 763, 976, 1117
Bst6I CTCTTC 1 cut(s) 513
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 8 cut(s) 91, 95, 253, 327, 353, 499, 503, 1007
BstDEI CTNAG 5 cut(s) 163, 438, 747, 1045, 1124
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 3 cut(s) 369, 784, 1024
BstMAI GTCTC 4 cut(s) 434, 743, 952, 1048
BstMBI GATC 3 cut(s) 366, 781, 1021
BstMWI GCNNNNNNNGC 9 cut(s) 257, 322, 494, 710, 719, 919, 928, 1006, 1209
BstNI CCWGG 3 cut(s) 332, 1224, 1255
BstNSI RCATGY 2 cut(s) 329, 552
BstSCI CCNGG 3 cut(s) 330, 1222, 1253
BstSFI CTRYAG 2 cut(s) 642, 1230
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 5 cut(s) 303, 693, 890, 1216, 1244
BstV2I GAAGAC 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 554
BsuI GTATCC 2 cut(s) 371, 1120
BsuRI GGCC 2 cut(s) 89, 704
BtgZI GCGATG 1 cut(s) 294
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 3 cut(s) 367, 877, 1113
Cac8I GCNNGC 8 cut(s) 91, 95, 253, 327, 353, 499, 503, 1007
CaiI CAGNNNCTG 1 cut(s) 1238
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 5 cut(s) 10, 599, 639, 972, 1134
CspAI ACCGGT 1 cut(s) 490
CviAII CATG 4 cut(s) 139, 326, 549, 925
CviQI GTAC 5 cut(s) 10, 599, 639, 972, 1134
DdeI CTNAG 5 cut(s) 163, 438, 747, 1045, 1124
DpnI GATC 3 cut(s) 368, 783, 1023
DpnII GATC 3 cut(s) 366, 781, 1021
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Ecl136II GAGCTC 1 cut(s) 829
Eco130I CCWWGG 2 cut(s) 705, 753
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 831
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 829
Eco57I CTGAAG 2 cut(s) 50, 828
Eco88I CYCGRG 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 829
EcoRII CCWGG 3 cut(s) 330, 1222, 1253
EcoT14I CCWWGG 2 cut(s) 705, 753
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 2 cut(s) 705, 753
Esp3I CGTCTC 1 cut(s) 952
FaeI CATG 4 cut(s) 142, 329, 552, 928
FaqI GGGAC 1 cut(s) 114
FatI CATG 4 cut(s) 138, 325, 548, 924
FbaI TGATCA 1 cut(s) 781
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 6 cut(s) 231, 317, 682, 879, 1230, 1233
FokI GGATG 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 831
Fsp4HI GCNGC 6 cut(s) 231, 317, 682, 879, 1230, 1233
FspBI CTAG 1 cut(s) 788
GluI GCNGC 6 cut(s) 231, 317, 682, 879, 1230, 1233
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 1245
HaeIII GGCC 2 cut(s) 89, 704
HapII CCGG 3 cut(s) 54, 309, 491
Hin1II CATG 4 cut(s) 142, 329, 552, 928
HincII GTYRAC 1 cut(s) 1036
HindII GTYRAC 1 cut(s) 1036
HindIII AAGCTT 2 cut(s) 236, 998
HinfI GANTC 2 cut(s) 848, 1037
HpaII CCGG 3 cut(s) 54, 309, 491
HphI GGTGA 2 cut(s) 286, 1192
Hpy166II GTNNAC 3 cut(s) 554, 1036, 1183
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 4 cut(s) 76, 343, 688, 852
Hpy8I GTNNAC 3 cut(s) 554, 1036, 1183
HpyAV CCTTC 4 cut(s) 25, 425, 694, 1088
HpyCH4III ACNGT 4 cut(s) 643, 763, 976, 1117
HpyCH4IV ACGT 2 cut(s) 450, 601
HpyF10VI GCNNNNNNNGC 9 cut(s) 257, 322, 494, 710, 719, 919, 928, 1006, 1209
HpyF3I CTNAG 5 cut(s) 163, 438, 747, 1045, 1124
HpySE526I ACGT 2 cut(s) 450, 601
Hsp92II CATG 4 cut(s) 142, 329, 552, 928
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 3 cut(s) 366, 781, 1021
LmnI GCTCC 5 cut(s) 334, 826, 854, 875, 1226
Lsp1109I GCAGC 5 cut(s) 303, 693, 890, 1216, 1244
LweI GCATC 3 cut(s) 535, 661, 693
MaeI CTAG 1 cut(s) 788
MaeII ACGT 2 cut(s) 450, 601
MaeIII GTNAC 4 cut(s) 178, 914, 1072, 1100
MalI GATC 3 cut(s) 368, 783, 1023
MboI GATC 3 cut(s) 366, 781, 1021
MboII GAAGA 6 cut(s) 409, 428, 530, 821, 1096, 1103
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 2 cut(s) 42, 831
MlyI GAGTC 1 cut(s) 1031
MmeI TCCRAC 1 cut(s) 865
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 6 cut(s) 204, 393, 474, 585, 662, 767
MslI CAYNNNNRTG 2 cut(s) 360, 906
MspI CCGG 3 cut(s) 54, 309, 491
MspR9I CCNGG 3 cut(s) 332, 1224, 1255
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 3 cut(s) 332, 1224, 1255
MwoI GCNNNNNNNGC 9 cut(s) 257, 322, 494, 710, 719, 919, 928, 1006, 1209
NdeII GATC 3 cut(s) 366, 781, 1021
NlaIII CATG 4 cut(s) 142, 329, 552, 928
NlaIV GGNNCC 3 cut(s) 130, 193, 856
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 2 cut(s) 329, 552
OliI CACNNNNGTG 1 cut(s) 360
PaeI GCATGC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 212
PceI AGGCCT 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 967
PfeI GAWTC 1 cut(s) 848
PflFI GACNNNGTC 1 cut(s) 1040
PfoI TCCNGGA 1 cut(s) 1222
PinAI ACCGGT 1 cut(s) 490
PkrI GCNGC 6 cut(s) 232, 318, 683, 880, 1231, 1234
PleI GAGTC 1 cut(s) 1031
PpsI GAGTC 1 cut(s) 1031
Ppu21I YACGTR 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 831
Psp6I CCWGG 3 cut(s) 330, 1222, 1253
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 3 cut(s) 330, 1222, 1253
PspN4I GGNNCC 3 cut(s) 130, 193, 856
PspPI GGNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 212
PstI CTGCAG 1 cut(s) 1234
PstNI CAGNNNCTG 1 cut(s) 1238
PsyI GACNNNGTC 1 cut(s) 1040
RsaI GTAC 5 cut(s) 11, 600, 640, 973, 1135
RsaNI GTAC 5 cut(s) 10, 599, 639, 972, 1134
RseI CAYNNNNRTG 2 cut(s) 360, 906
SacI GAGCTC 1 cut(s) 831
SaqAI TTAA 6 cut(s) 204, 393, 474, 585, 662, 767
SatI GCNGC 6 cut(s) 231, 317, 682, 879, 1230, 1233
Sau3AI GATC 3 cut(s) 366, 781, 1021
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 1135
SchI GAGTC 1 cut(s) 1031
ScrFI CCNGG 3 cut(s) 332, 1224, 1255
SduI GDGCHC 2 cut(s) 42, 831
SfaNI GCATC 3 cut(s) 535, 661, 693
SfcI CTRYAG 2 cut(s) 642, 1230
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 360, 906
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 329
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 68, 231
SspMI CTAG 1 cut(s) 788
SstI GAGCTC 1 cut(s) 831
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 330, 1222, 1253
StyI CCWWGG 2 cut(s) 705, 753
TaaI ACNGT 4 cut(s) 643, 763, 976, 1117
TaiI ACGT 2 cut(s) 453, 604
TaqI TCGA 3 cut(s) 84, 213, 649
TaqII GACCGA 1 cut(s) 116
TatI WGTACW 2 cut(s) 638, 1133
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 6 cut(s) 204, 393, 474, 585, 662, 767
Tru9I TTAA 6 cut(s) 204, 393, 474, 585, 662, 767
TscAI CASTG 3 cut(s) 367, 877, 1120
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 5 cut(s) 316, 681, 878, 1229, 1232
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 5 cut(s) 155, 222, 497, 761, 1104
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 3 cut(s) 367, 877, 1120
Tth111I GACNNNGTC 1 cut(s) 1040
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 947
XceI RCATGY 2 cut(s) 329, 552
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 553
XspI CTAG 1 cut(s) 788
ZrmI AGTACT 1 cut(s) 1135
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.