RLG00000019142
TCP Family

assists the folding of proteins upon ATP hydrolysis

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
47253423 .. 47260079
6657 bp
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UTR
Exon/CDS
Intron
RLM00000019142

Sequence Viewer

Length: 1521 bp
ATGTCGCAGTACGGAATACAATCAATGCTGAAGGAGGGGCACAAGCACCTCTCCGGTTTGGATGAAGCGGTGGTGAAGAACATCGAGGCCTGCAAGCAACTCTCCACCATCATTCGCACTTCTCTCGGTCCCAACGGCATGAATAAGATGGTAATCAATCACTTGGACAAGCTCTTTGTCACGAATGACGGTGCCACCATTGTGAATGAACTCGAGGTTCAGCACCCTGCGGCCAAGCTTTTGGTTCTGGCAGGGAAGGCTCAACAGGAGGAGATTGGCGATGGTGCTAATCTCACCATTTCGTTCGCCGGAGAGCTGCTTTCGCATGCCGAGGAGCTTATCAGGATGGGCTTGCATCCAAGTGAGATCATTAGTGGATACACGAAAGCAATTAAGAAGACAATTGAAATCTTGGAAGAACTGGTTGAGGAAGGTTCTGAGACTATGGACGTGCGTAATAAAGAACAAGTGGTTAGAAGAATGAAAGCACCTGTTGCCAGCAAGCAGTTTGGACAAGAAGAGATTTTATCCTCACTTGTTGCCGATGCATGTATACAAGTATGCCCCAAGAACCCAGCAAACTTTAATGTGGATAATGTACGTGTGGCAAAGTTCTTGGGAGGGGGTTTGCATAACTGTACTGTAGTTCGAGGTATGGCGTTAAAGACTGATGCTGTTGGCAGCATAAAGAAAATGCAGAAGGCCAAGGTAGCTGTGTTTGCTGGTGGTGTTGATACCTCTGCAACTGAAACCAAGGGAACTGTCTTAATTCATACTGCCGAGCAGATGGCATTACATTTCTGTGAGCGTTACAAGCTCATGGTGCTGAAAATTAGTTCAAAATTTGAATTGAGACGATTTTGCCGTACAGTTGGTGCTGTTGCTATGTTGAAGCTTTGCCAGCCTAACCCAGATGATCTCGGATATGTTGACTCTGTCTCAGTTGAGGAAATTGGTGGTGTTAGGGTTACTATTGTGAAGAATGAAGAAGGTGGTAACTCTGTTGCTACTGTGCTTCTTAGGGCAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCGGTTGATGATGGGGTGAACACTTACAAGGCTATGTGCAGGGATAGCCGCATTGTTCCTGGAGCTGCAGCTACTGAAATTGAGTTAGCCAGGAGAGTCAAGGAGTTTTCTTTCAAAGAAACAGGGTTGGATCAGTATGCTATAGCAAAATTTGCTCACAGTTTCGAGATGGTGCCAAAAACTCTTGCTGAAAATGCGGGGCTTAATTCAATGGAGATAATATCTTCCCTATATGCTGAACATGCAGCTGGGAAAACCAAAGTTGGCATTGACTTGGAGGGAGGCGTTTGCAAAGATGTATCAACTCTACAAGTTTGGGACCTTCATGTTACTAAGTTCTTTGCTCTCAAGTATGCTGCAGATGCTGCCTGCACTGTACTACGAGTAGATCAAATTATAATGGCAAAGCCTGCTGGTGGCCCAAGGAGGGGGGACCAGCCTGCAGGCATGGATGAGGACTAA

Protein Analysis

507

Amino Acids

54.83

Weight (kDa)

6.02

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 34 - 264 1.1e-68 TCP-1/cpn60 chaperonin family
Cpn60_TCP1 PF00118 262 - 490 1.3e-70 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1457
AccB1I GGYRCC 2 cut(s) 191, 1231
AccBSI CCGCTC 1 cut(s) 1061
AccI GTMKAC 1 cut(s) 553
AciI CCGC 5 cut(s) 68, 230, 1061, 1108, 1256
AclWI GGATC 1 cut(s) 1197
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 842, 1208
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 6 cut(s) 11, 600, 640, 868, 1030, 1437
AfiI CCNNNNNNNGG 3 cut(s) 1475, 1486, 1487
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 7 cut(s) 407, 840, 848, 892, 1055, 1174, 1269
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 2 cut(s) 1117, 1148
AleI CACNNNNGTG 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 434, 847, 943
AlwI GGATC 1 cut(s) 1197
AlwNI CAGNNNCTG 2 cut(s) 1133, 1424
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 4 cut(s) 87, 231, 702, 1477
ApeKI GCWGC 7 cut(s) 316, 681, 1124, 1127, 1304, 1415, 1424
ApoI RAATTY 2 cut(s) 842, 1208
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 4 cut(s) 128, 1378, 1478, 1492
AsuHPI GGTGA 3 cut(s) 85, 286, 1087
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 3 cut(s) 128, 1378, 1492
BaeGI GKGCMC 1 cut(s) 42
BanI GGYRCC 2 cut(s) 191, 1231
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 7 cut(s) 303, 693, 1111, 1139, 1316, 1402, 1411
BccI CCATC 7 cut(s) 116, 142, 275, 340, 781, 1064, 1222
BceAI ACGGC 2 cut(s) 151, 849
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 2 cut(s) 1119, 1150
BciVI GTATCC 1 cut(s) 371
BcoDI GTCTC 3 cut(s) 434, 847, 943
BfmI CTRYAG 5 cut(s) 642, 1125, 1200, 1416, 1500
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 9 cut(s) 231, 317, 682, 1108, 1125, 1128, 1305, 1416, 1425
BlsI GCNGC 9 cut(s) 232, 318, 683, 1109, 1126, 1129, 1306, 1417, 1426
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 2 cut(s) 1119, 1150
Bme18I GGWCC 3 cut(s) 128, 1378, 1492
BmeT110I CYCGRG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 4 cut(s) 128, 1378, 1478, 1492
BmiI GGNNCC 5 cut(s) 130, 193, 1233, 1379, 1493
BmrFI CCNGG 2 cut(s) 1119, 1150
BmsI GCATC 4 cut(s) 364, 535, 661, 1411
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 1140
BpuEI CTTGAG 1 cut(s) 1391
BsaAI YACGTR 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 330, 705, 753, 1481
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 3 cut(s) 1475, 1486, 1487
Bse1I ACTGG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 2 cut(s) 1119, 1150
BseDI CCNNGG 4 cut(s) 330, 705, 753, 1481
BseGI GGATG 4 cut(s) 67, 351, 355, 1516
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 3 cut(s) 1475, 1486, 1487
BseMII CTCAG 2 cut(s) 429, 954
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 284, 347
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 7 cut(s) 303, 693, 1111, 1139, 1316, 1402, 1411
BseYI CCCAGC 2 cut(s) 574, 1307
BsgI GTGCAG 2 cut(s) 1117, 1414
BshFI GGCC 4 cut(s) 89, 233, 704, 1479
BshNI GGYRCC 2 cut(s) 191, 1231
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 54, 309
BslFI GGGAC 3 cut(s) 114, 1391, 1505
BslI CCNNNNNNNGG 3 cut(s) 1475, 1486, 1487
BsmAI GTCTC 3 cut(s) 434, 847, 943
BsmBI CGTCTC 1 cut(s) 847
BsmFI GGGAC 3 cut(s) 114, 1391, 1505
BsnI GGCC 4 cut(s) 89, 233, 704, 1479
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 366, 916, 1189, 1447
BspACI CCGC 5 cut(s) 68, 230, 1061, 1108, 1256
BspANI GGCC 4 cut(s) 89, 233, 704, 1479
BspCNI CTCAG 2 cut(s) 430, 953
BspLI GGNNCC 5 cut(s) 130, 193, 1233, 1379, 1493
BspMAI CTGCAG 3 cut(s) 1129, 1420, 1504
BspPI GGATC 1 cut(s) 1197
BspT107I GGYRCC 2 cut(s) 191, 1231
BsrBI CCGCTC 1 cut(s) 1061
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 4 cut(s) 330, 705, 753, 1481
BssMI GATC 4 cut(s) 366, 916, 1189, 1447
BssNAI GTATAC 1 cut(s) 554
BssT1I CCWWGG 3 cut(s) 705, 753, 1481
Bst1107I GTATAC 1 cut(s) 554
Bst2UI CCWGG 2 cut(s) 1119, 1150
Bst4CI ACNGT 8 cut(s) 191, 638, 643, 763, 871, 1012, 1220, 1435
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 4 cut(s) 494, 1211, 1424, 1469
BstBAI YACGTR 1 cut(s) 602
BstDEI CTNAG 4 cut(s) 438, 940, 1019, 1392
BstF5I GGATG 4 cut(s) 67, 351, 355, 1516
BstKTI GATC 4 cut(s) 369, 919, 1192, 1450
BstMAI GTCTC 3 cut(s) 434, 847, 943
BstMBI GATC 4 cut(s) 366, 916, 1189, 1447
BstNI CCWGG 2 cut(s) 1119, 1150
BstNSI RCATGY 3 cut(s) 329, 552, 1304
BstSCI CCNGG 2 cut(s) 1117, 1148
BstSFI CTRYAG 5 cut(s) 642, 1125, 1200, 1416, 1500
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 7 cut(s) 303, 693, 1111, 1139, 1316, 1402, 1411
BstV2I GAAGAC 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 554
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 4 cut(s) 89, 233, 704, 1479
BtgZI GCGATG 1 cut(s) 294
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 4 cut(s) 67, 351, 355, 1516
BtsIMutI CAGTG 1 cut(s) 1431
CaiI CAGNNNCTG 2 cut(s) 1133, 1424
Cfr13I GGNCC 4 cut(s) 128, 1378, 1478, 1492
Csp6I GTAC 6 cut(s) 10, 599, 639, 867, 1029, 1436
CviAII CATG 7 cut(s) 139, 326, 549, 820, 1301, 1385, 1507
CviQI GTAC 6 cut(s) 10, 599, 639, 867, 1029, 1436
DdeI CTNAG 4 cut(s) 438, 940, 1019, 1392
DpnI GATC 4 cut(s) 368, 918, 1191, 1449
DpnII GATC 4 cut(s) 366, 916, 1189, 1447
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 3 cut(s) 705, 753, 1481
Eco147I AGGCCT 1 cut(s) 89
Eco47I GGWCC 3 cut(s) 128, 1378, 1492
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 1378
EcoRII CCWGG 2 cut(s) 1117, 1148
EcoT14I CCWWGG 3 cut(s) 705, 753, 1481
EcoT22I ATGCAT 1 cut(s) 550
ErhI CCWWGG 3 cut(s) 705, 753, 1481
Esp3I CGTCTC 1 cut(s) 847
FaeI CATG 7 cut(s) 142, 329, 552, 823, 1304, 1388, 1510
FaqI GGGAC 3 cut(s) 114, 1391, 1505
FatI CATG 7 cut(s) 138, 325, 548, 819, 1300, 1384, 1506
FauI CCCGC 1 cut(s) 1249
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 9 cut(s) 231, 317, 682, 1108, 1125, 1128, 1305, 1416, 1425
FokI GGATG 3 cut(s) 74, 342, 358
Fsp4HI GCNGC 9 cut(s) 231, 317, 682, 1108, 1125, 1128, 1305, 1416, 1425
GluI GCNGC 9 cut(s) 231, 317, 682, 1108, 1125, 1128, 1305, 1416, 1425
GsaI CCCAGC 2 cut(s) 578, 1311
GsuI CTGGAG 1 cut(s) 1140
HaeIII GGCC 4 cut(s) 89, 233, 704, 1479
HapII CCGG 2 cut(s) 54, 309
Hin1II CATG 7 cut(s) 142, 329, 552, 823, 1304, 1388, 1510
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 2 cut(s) 236, 893
HinfI GANTC 2 cut(s) 932, 1155
HpaII CCGG 2 cut(s) 54, 309
HphI GGTGA 3 cut(s) 85, 286, 1087
Hpy166II GTNNAC 3 cut(s) 554, 931, 1078
Hpy188I TCNGA 2 cut(s) 439, 923
Hpy188III TCNNGA 3 cut(s) 181, 343, 1225
Hpy8I GTNNAC 3 cut(s) 554, 931, 1078
HpyAV CCTTC 6 cut(s) 25, 250, 425, 694, 983, 1391
HpyCH4III ACNGT 8 cut(s) 191, 638, 643, 763, 871, 1012, 1220, 1435
HpyCH4IV ACGT 2 cut(s) 450, 601
HpyF3I CTNAG 4 cut(s) 438, 940, 1019, 1392
HpySE526I ACGT 2 cut(s) 450, 601
Hsp92II CATG 7 cut(s) 142, 329, 552, 823, 1304, 1388, 1510
Kzo9I GATC 4 cut(s) 366, 916, 1189, 1447
LmnI GCTCC 2 cut(s) 334, 1121
Lsp1109I GCAGC 7 cut(s) 303, 693, 1111, 1139, 1316, 1402, 1411
LweI GCATC 4 cut(s) 364, 535, 661, 1411
MaeII ACGT 2 cut(s) 450, 601
MaeIII GTNAC 5 cut(s) 178, 809, 967, 995, 1387
MalI GATC 4 cut(s) 368, 918, 1191, 1449
MbiI CCGCTC 1 cut(s) 1061
MboI GATC 4 cut(s) 366, 916, 1189, 1447
MboII GAAGA 8 cut(s) 88, 409, 428, 489, 530, 991, 998, 1275
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 42
MlyI GAGTC 2 cut(s) 926, 1164
MmeI TCCRAC 1 cut(s) 1167
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 5 cut(s) 393, 585, 662, 767, 1263
MslI CAYNNNNRTG 3 cut(s) 200, 360, 801
MspA1I CMGCKG 1 cut(s) 1307
MspI CCGG 2 cut(s) 54, 309
MspR9I CCNGG 2 cut(s) 1119, 1150
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 2 cut(s) 1119, 1150
NdeII GATC 4 cut(s) 366, 916, 1189, 1447
NlaIII CATG 7 cut(s) 142, 329, 552, 823, 1304, 1388, 1510
NlaIV GGNNCC 5 cut(s) 130, 193, 1233, 1379, 1493
NmeAIII GCCGAG 2 cut(s) 355, 805
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 3 cut(s) 329, 552, 1304
OliI CACNNNNGTG 1 cut(s) 200
PaeI GCATGC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 212
PceI AGGCCT 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 862
PflFI GACNNNGTC 1 cut(s) 935
PfoI TCCNGGA 1 cut(s) 1117
PkrI GCNGC 9 cut(s) 232, 318, 683, 1109, 1126, 1129, 1306, 1417, 1426
PleI GAGTC 2 cut(s) 926, 1163
PpsI GAGTC 2 cut(s) 926, 1163
Ppu21I YACGTR 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 1378
PsiI TTATAA 1 cut(s) 1457
Psp5II RGGWCCY 1 cut(s) 1378
Psp6I CCWGG 2 cut(s) 1117, 1148
PspFI CCCAGC 2 cut(s) 574, 1307
PspGI CCWGG 2 cut(s) 1117, 1148
PspN4I GGNNCC 5 cut(s) 130, 193, 1233, 1379, 1493
PspPI GGNCC 4 cut(s) 128, 1378, 1478, 1492
PspPPI RGGWCCY 1 cut(s) 1378
PspXI VCTCGAGB 1 cut(s) 212
PstI CTGCAG 3 cut(s) 1129, 1420, 1504
PstNI CAGNNNCTG 2 cut(s) 1133, 1424
PsyI GACNNNGTC 1 cut(s) 935
PvuII CAGCTG 1 cut(s) 1307
RsaI GTAC 6 cut(s) 11, 600, 640, 868, 1030, 1437
RsaNI GTAC 6 cut(s) 10, 599, 639, 867, 1029, 1436
RseI CAYNNNNRTG 3 cut(s) 200, 360, 801
SaqAI TTAA 5 cut(s) 393, 585, 662, 767, 1263
SatI GCNGC 9 cut(s) 231, 317, 682, 1108, 1125, 1128, 1305, 1416, 1425
Sau3AI GATC 4 cut(s) 366, 916, 1189, 1447
Sau96I GGNCC 4 cut(s) 128, 1378, 1478, 1492
SbfI CCTGCAGG 1 cut(s) 1504
ScaI AGTACT 1 cut(s) 1030
SchI GAGTC 2 cut(s) 926, 1164
ScrFI CCNGG 2 cut(s) 1119, 1150
SdaI CCTGCAGG 1 cut(s) 1504
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 4 cut(s) 364, 535, 661, 1411
SfcI CTRYAG 5 cut(s) 642, 1125, 1200, 1416, 1500
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 3 cut(s) 128, 1378, 1492
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 3 cut(s) 200, 360, 801
SmlI CTYRAG 2 cut(s) 212, 1406
SmoI CTYRAG 2 cut(s) 212, 1406
SphI GCATGC 1 cut(s) 329
Sse8387I CCTGCAGG 1 cut(s) 1504
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 5 cut(s) 68, 230, 1061, 1108, 1256
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 1117, 1148
StyI CCWWGG 3 cut(s) 705, 753, 1481
TaaI ACNGT 8 cut(s) 191, 638, 643, 763, 871, 1012, 1220, 1435
TaiI ACGT 2 cut(s) 453, 604
TaqI TCGA 4 cut(s) 84, 213, 649, 1224
TaqII GACCGA 1 cut(s) 116
TatI WGTACW 3 cut(s) 638, 1028, 1435
TauI GCSGC 2 cut(s) 233, 1110
Tru1I TTAA 5 cut(s) 393, 585, 662, 767, 1263
Tru9I TTAA 5 cut(s) 393, 585, 662, 767, 1263
TscAI CASTG 1 cut(s) 1438
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 7 cut(s) 316, 681, 1124, 1127, 1304, 1415, 1424
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 7 cut(s) 78, 155, 222, 497, 761, 999, 1373
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 1438
Tth111I GACNNNGTC 1 cut(s) 935
VpaK11BI GGWCC 3 cut(s) 128, 1378, 1492
XapI RAATTY 2 cut(s) 842, 1208
XceI RCATGY 3 cut(s) 329, 552, 1304
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 553
ZrmI AGTACT 1 cut(s) 1030
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.