Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010112

Physical Location & Seq

Genomic Coordinates Reverse (-)

32317623 .. 32318633

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCAGAATACTCTCACTTCTACATCCAATGGAGATCCATACAAAGACCTCTGGAAGAATATCTGGAAGGCCAAAGTGCCTGGTAAGGTAAGCATTTGTGTTTGGAGAGCTTGTCATAATTTGCTCCCCACAAGAGAGAGGCTGCTTACTAAGGGTTATGATGGTACCACCAACTGTTTACTCTGCAATCATCAAGTGGAAGATGTGGTCCACCTTTTCTGCAAATGTCCCATAGCAACAACTATACTCTCAGCAGCTCCTTTTAATCTGCAGGGCACTATTTTACCATCACTCCACTTCAAAGAATGGATGCTAGAAAGAGCCTTAACACTGAGTGCTGAAAACTTGGCACGTCTAATGATGATAATATGGGCTATATGGAAAAACAGGAATAACATGCTATGGTCAGGAACACAACAAACTGCTCAAGATGTATTACTGAGCAGCTTCTCATGGCTCGAAGAGTTTCAGAAAGCTCGGGGTGGAATCAAACAACCGAAAGCGCATCCGCGACCTCGATGGAAACCTGCTGAAAATAGAGCGTTTAAATTGAATGTTGATGCGGCTTTCTTGTCATCAACAACCAAGGGAGGCATTGGCGGAATTTTACGGGATGCATCAGGAAGATTTGTAGCAGCATTTGCCAGTCCAGTGCCATATGCTGCATCTCCGAAACAATGTGAGCTTATGGCAATTAGAGCCGGCATTGATTTCCTTGTTTCCCTTCATATACAGCATGTGGTTGTAGAAAGCGACAGCACCATGGCCATAGCTGAGGCTCTGTGCACAGACCATACTCTCTTGGCCAATGGGGGTTTAATTGATGACATACAGAGGGCCATGCAGACAATTCCAAACGTTCAAATACGCCATCAACCACGCTCCAGCAATATGGTAGCACATAGGCTTGCTGGCATAGGCTTTGAAGCAATTAATAGTTGTATCTGGATAGGTCTAGCACCTACTTGTATTCGTGATGTTCTCCGTCACGATTCTCAGTACCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

336

Amino Acids

37.45

Weight (kDa)

9.12

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	12 - 81	5.1e-18	zinc-binding in reverse transcriptase
RVT_3	PF13456	185 - 304	2e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03960
fragaria_vesca	FvH4_6g27660 FvH4_6g27660
malus_domestica	MD09G1235600.v1.1 MD17G1264300.v1.1 MD17G1264600.v1.1
prunus_persica	Prupe.3G113600_v2.0.a1 Prupe.3G114000_v2.0.a1
pyrus_communis	pycom09g15360 pycom17g26410 pycom17g26440
rosa_chinensis	RchiOBHm_Chr2g0130701
rosa_laevigata	RLG00000019142
rosa_multiflora	Rmu_co8506905.1_g000001 Rmu_sc0002279.1_g000053
rosa_roxburghii	Rroxscaffold_2G00113700
rosa_rugosa	Rorug02G0292700
rosa_samantha	Rh2AG344300 Rh2BG352600 Rh2DG370700
rosa_wichuraiana	Rw2G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	1 cut(s)	511
AciI	CCGC	3 cut(s)	509, 563, 600
AclI	AACGTT	1 cut(s)	858
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	2 cut(s)	765, 804
AcsI	RAATTY	1 cut(s)	603
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	166, 1001
AgsI	TTSAA	4 cut(s)	301, 553, 863, 926
AjiI	CACGTC	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	6 cut(s)	110, 257, 447, 476, 685, 773
AluI	AGCT	6 cut(s)	110, 257, 447, 476, 685, 773
Alw21I	GWGCWC	1 cut(s)	788
Alw44I	GTGCAC	1 cut(s)	784
AlwI	GGATC	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	4 cut(s)	69, 765, 804, 837
ApaLI	GTGCAC	1 cut(s)	784
ApeKI	GCWGC	5 cut(s)	142, 254, 444, 635, 662
ApoI	RAATTY	1 cut(s)	603
AseI	ATTAAT	1 cut(s)	933
Asp700I	GAANNNNTTC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	208, 837
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	2 cut(s)	278, 788
BalI	TGGCCA	2 cut(s)	767, 806
BanI	GGYRCC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	788
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	5 cut(s)	129, 266, 456, 647, 649
BccI	CCATC	4 cut(s)	155, 295, 513, 879
BciT130I	CCWGG	1 cut(s)	81
BfaI	CTAG	2 cut(s)	314, 956
BfmI	CTRYAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	6 cut(s)	143, 255, 445, 564, 636, 663
BlsI	GCNGC	6 cut(s)	144, 256, 446, 565, 637, 664
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	477
BmgBI	CACGTC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	208, 837
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	6 cut(s)	300, 514, 550, 604, 626, 674
BpmI	CTGGAG	1 cut(s)	868
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	585, 762
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 276, 306
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	2 cut(s)	645, 650
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	585, 762
BseGI	GGATG	4 cut(s)	23, 315, 505, 619
BseMII	CTCAG	5 cut(s)	264, 323, 431, 765, 1010
BseNI	ACTGG	2 cut(s)	645, 650
BseSI	GKGCMC	2 cut(s)	278, 788
BseXI	GCAGC	5 cut(s)	129, 266, 456, 647, 649
Bsh1236I	CGCG	1 cut(s)	511
BshFI	GGCC	4 cut(s)	71, 767, 806, 839
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	788
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	4 cut(s)	71, 767, 806, 839
BsoBI	CYCGRG	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	278, 788
Bsp143I	GATC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	3 cut(s)	509, 563, 600
BspANI	GGCC	4 cut(s)	71, 767, 806, 839
BspCNI	CTCAG	5 cut(s)	263, 324, 432, 766, 1009
BspFNI	CGCG	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	2 cut(s)	645, 650
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	2 cut(s)	585, 762
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	2 cut(s)	585, 762
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	703, 909, 913
BstDEI	CTNAG	6 cut(s)	150, 250, 332, 440, 774, 996
BstDSI	CCRYGG	1 cut(s)	762
BstF5I	GGATG	4 cut(s)	23, 315, 505, 619
BstFNI	CGCG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 698
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	2 cut(s)	400, 740
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	2 cut(s)	278, 788
BstUI	CGCG	1 cut(s)	511
BstV1I	GCAGC	5 cut(s)	129, 266, 456, 647, 649
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	71, 767, 806, 839
BtgI	CCRYGG	1 cut(s)	762
BtrI	CACGTC	1 cut(s)	353
BtsCI	GGATG	4 cut(s)	23, 315, 505, 619
BtsIMutI	CAGTG	2 cut(s)	329, 657
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	3 cut(s)	703, 909, 913
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	2 cut(s)	208, 837
Csp6I	GTAC	2 cut(s)	165, 1000
CviAII	CATG	5 cut(s)	397, 453, 737, 763, 841
CviQI	GTAC	2 cut(s)	165, 1000
DdeI	CTNAG	6 cut(s)	150, 250, 332, 440, 774, 996
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DraI	TTTAAA	1 cut(s)	547
DraIII	CACNNNGTG	1 cut(s)	335
EaeI	YGGCCR	2 cut(s)	765, 804
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	615
Eco130I	CCWWGG	2 cut(s)	585, 762
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	585, 762
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	2 cut(s)	585, 762
FaeI	CATG	5 cut(s)	400, 456, 740, 766, 844
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	5 cut(s)	396, 452, 736, 762, 840
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	6 cut(s)	143, 255, 445, 564, 636, 663
FokI	GGATG	4 cut(s)	10, 322, 492, 626
Fsp4HI	GCNGC	6 cut(s)	143, 255, 445, 564, 636, 663
FspBI	CTAG	2 cut(s)	314, 956
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	6 cut(s)	143, 255, 445, 564, 636, 663
GsuI	CTGGAG	1 cut(s)	868
HaeIII	GGCC	4 cut(s)	71, 767, 806, 839
HapII	CCGG	1 cut(s)	702
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	5 cut(s)	400, 456, 740, 766, 844
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	2 cut(s)	486, 992
HpaII	CCGG	1 cut(s)	702
Hpy166II	GTNNAC	3 cut(s)	179, 211, 786
Hpy188I	TCNGA	2 cut(s)	471, 672
Hpy188III	TCNNGA	8 cut(s)	52, 64, 408, 428, 621, 946, 974, 989
Hpy8I	GTNNAC	3 cut(s)	179, 211, 786
HpyAV	CCTTC	2 cut(s)	61, 734
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	352, 858
HpyCH4V	TGCA	8 cut(s)	4, 186, 222, 271, 617, 665, 786, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 698
HpyF3I	CTNAG	6 cut(s)	150, 250, 332, 440, 774, 996
HpySE526I	ACGT	2 cut(s)	352, 858
Hsp92II	CATG	5 cut(s)	400, 456, 740, 766, 844
HspAI	GCGC	1 cut(s)	503
KpnI	GGTACC	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	701
KroNI	GCCGGC	1 cut(s)	703
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	3 cut(s)	129, 262, 887
Lsp1109I	GCAGC	5 cut(s)	129, 266, 456, 647, 649
LweI	GCATC	6 cut(s)	300, 514, 550, 604, 626, 674
MaeI	CTAG	2 cut(s)	314, 956
MaeII	ACGT	2 cut(s)	352, 858
MaeIII	GTNAC	1 cut(s)	986
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	4 cut(s)	67, 212, 473, 636
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	278, 788
MlsI	TGGCCA	2 cut(s)	767, 806
MluCI	AATT	7 cut(s)	118, 548, 603, 693, 819, 849, 930
MluNI	TGGCCA	2 cut(s)	767, 806
MnlI	CCTC	6 cut(s)	59, 132, 525, 584, 769, 828
Mox20I	TGGCCA	2 cut(s)	767, 806
Mph1103I	ATGCAT	1 cut(s)	619
MroNI	GCCGGC	1 cut(s)	701
MroXI	GAANNNNTTC	1 cut(s)	465
MscI	TGGCCA	2 cut(s)	767, 806
MseI	TTAA	5 cut(s)	264, 326, 546, 818, 933
Msp20I	TGGCCA	2 cut(s)	767, 806
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	511
MwoI	GCNNNNNNNGC	2 cut(s)	641, 698
NaeI	GCCGGC	1 cut(s)	703
NcoI	CCATGG	1 cut(s)	762
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	1 cut(s)	34
NgoMIV	GCCGGC	1 cut(s)	701
NlaIII	CATG	5 cut(s)	400, 456, 740, 766, 844
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	986
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	2 cut(s)	400, 740
PdiI	GCCGGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	486, 992
PkrI	GCNGC	6 cut(s)	144, 256, 446, 565, 637, 664
PshBI	ATTAAT	1 cut(s)	933
Psp1406I	AACGTT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	208, 837
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	2 cut(s)	166, 1001
RsaNI	GTAC	2 cut(s)	165, 1000
SaqAI	TTAA	5 cut(s)	264, 326, 546, 818, 933
SatI	GCNGC	6 cut(s)	143, 255, 445, 564, 636, 663
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	2 cut(s)	208, 837
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	278, 788
SfaNI	GCATC	6 cut(s)	300, 514, 550, 604, 626, 674
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	7 cut(s)	118, 548, 603, 693, 819, 849, 930
SsiI	CCGC	3 cut(s)	509, 563, 600
SspMI	CTAG	2 cut(s)	314, 956
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	2 cut(s)	585, 762
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	2 cut(s)	355, 861
TaqI	TCGA	2 cut(s)	459, 517
TasI	AATT	7 cut(s)	118, 548, 603, 693, 819, 849, 930
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	486, 992
Tru1I	TTAA	5 cut(s)	264, 326, 546, 818, 933
Tru9I	TTAA	5 cut(s)	264, 326, 546, 818, 933
TscAI	CASTG	2 cut(s)	336, 657
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	5 cut(s)	142, 254, 444, 635, 662
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	1 cut(s)	716
TspGWI	ACGGA	1 cut(s)	974
TspRI	CASTG	2 cut(s)	336, 657
VneI	GTGCAC	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	933
XapI	RAATTY	1 cut(s)	603
XceI	RCATGY	2 cut(s)	400, 740
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	2 cut(s)	314, 956
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.