Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8506905.1

Orthogroup ID

OG0010112

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3160

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8506905.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 782 bp

atgaataagatggtaatcaatcacttagataagctctttgtcacaaatgatggtgccaccattgttaatgaactcgaggttcagcaccctgccgccaagcttttggttttggcaggcaaggctcaacaggaggagattggcgatggtgctaatctcaccatttcgttcgccggagaactgctttcgcatgccgaggagcttatcaggatgggcttgcaccccagtgagatcattagtggatacacgaaagcaattaagaagacaattgaaatcttggaagaactggttgaggaaggttctgagactatggacgtgcgtaataaagaacaagtggttaaaagaatgaaagcaccggtagccagcaagcagtttggacaagaagagatattgtcctcacttgttgccgatgcatgtatacaagtatgccccaagaacccagcaaactttaatgtggataatgtacgtgtggcaaagttcttgggagggggtttgcataattgtactgtagttcgaggtatggcattaaagactgatgctgttggcagcatcaagaaaatgcagaaggccaaggttgctgtgtttgctggtggtgttgatacctctgcaactgagaccaagggaactgtcttaattcatactgctgagcagctagaaaattatgcaaaaactgaagaagctaaagttgaggagctcatcaaagcagttgcagattcaggagccaaagtaattgtcagtggagcagcagttggagaaatggcattacatttctgtgagcgttacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

260

Amino Acids

27.96

Weight (kDa)

5.72

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03960
fragaria_vesca	FvH4_6g27660 FvH4_6g27660
malus_domestica	MD09G1235600.v1.1 MD17G1264300.v1.1 MD17G1264600.v1.1
prunus_persica	Prupe.3G113600_v2.0.a1 Prupe.3G114000_v2.0.a1
pyrus_communis	pycom09g15360 pycom17g26410 pycom17g26440
rosa_chinensis	RchiOBHm_Chr2g0130701
rosa_laevigata	RLG00000019142
rosa_multiflora	Rmu_co8506905.1_g000001 Rmu_sc0002279.1_g000053
rosa_roxburghii	Rroxscaffold_2G00113700
rosa_rugosa	Rorug02G0292700
rosa_samantha	Rh2AG344300 Rh2BG352600 Rh2DG370700
rosa_wichuraiana	Rw2G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	2 cut(s)	462, 502
AflIII	ACRYGT	1 cut(s)	463
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	269
AjiI	CACGTC	1 cut(s)	313
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	6 cut(s)	34, 100, 199, 649, 677, 691
AluI	AGCT	6 cut(s)	34, 100, 199, 649, 677, 691
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	296, 605
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	3 cut(s)	543, 646, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	714, 746
AsiGI	ACCGGT	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	3 cut(s)	555, 658, 752
BccI	CCATC	4 cut(s)	4, 44, 137, 202
BciVI	GTATCC	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	296, 605
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	4 cut(s)	93, 544, 647, 741
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	4 cut(s)	94, 545, 648, 742
BmeT110I	CYCGRG	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	55, 718
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	3 cut(s)	397, 523, 555
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	642
BsaAI	YACGTR	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	3 cut(s)	192, 567, 615
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	4 cut(s)	708, 729, 738, 759
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	222, 288
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	3 cut(s)	192, 567, 615
BseGI	GGATG	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	291, 600, 633
BseNI	ACTGG	2 cut(s)	222, 288
BseRI	GAGGAG	3 cut(s)	146, 209, 701
BseXI	GCAGC	3 cut(s)	555, 658, 752
BseYI	CCCAGC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	171, 353
BsmAI	GTCTC	2 cut(s)	296, 605
BsnI	GGCC	1 cut(s)	566
Bso31I	GGTCTC	1 cut(s)	605
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	1 cut(s)	228
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	3 cut(s)	292, 601, 634
BspLI	GGNNCC	2 cut(s)	55, 718
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	222, 288
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	192, 567, 615
BssMI	GATC	1 cut(s)	228
BssNAI	GTATAC	1 cut(s)	416
BssT1I	CCWWGG	2 cut(s)	567, 615
Bst1107I	GTATAC	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	505, 625
Bst6I	CTCTTC	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	5 cut(s)	115, 189, 215, 361, 365
BstDEI	CTNAG	4 cut(s)	25, 300, 609, 642
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	2 cut(s)	296, 605
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 356, 572, 581
BstNSI	RCATGY	2 cut(s)	191, 414
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	555, 658, 752
BstV2I	GAAGAC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	566
BtgZI	GCGATG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	229, 739
Cac8I	GCNNGC	5 cut(s)	115, 189, 215, 361, 365
Cfr10I	RCCGGY	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	461, 501
CspAI	ACCGGT	1 cut(s)	352
CviAII	CATG	2 cut(s)	188, 411
CviQI	GTAC	2 cut(s)	461, 501
DdeI	CTNAG	4 cut(s)	25, 300, 609, 642
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	2 cut(s)	567, 615
Eco24I	GRGCYC	1 cut(s)	693
Eco31I	GGTCTC	1 cut(s)	605
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	567, 615
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	693
ErhI	CCWWGG	2 cut(s)	567, 615
FaeI	CATG	2 cut(s)	191, 414
FaiI	YATR	9 cut(s)	189, 308, 412, 416, 424, 495, 518, 636, 660
FatI	CATG	2 cut(s)	187, 410
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	93, 544, 647, 741
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	4 cut(s)	93, 544, 647, 741
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	4 cut(s)	93, 544, 647, 741
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	2 cut(s)	171, 353
Hin1II	CATG	2 cut(s)	191, 414
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	710
HpaII	CCGG	2 cut(s)	171, 353
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	205, 550, 714
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	287, 556
HpyCH4III	ACNGT	2 cut(s)	505, 625
HpyCH4IV	ACGT	2 cut(s)	312, 463
HpyCH4V	TGCA	7 cut(s)	217, 410, 493, 559, 605, 662, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 356, 572, 581
HpyF3I	CTNAG	4 cut(s)	25, 300, 609, 642
HpySE526I	ACGT	2 cut(s)	312, 463
Hsp92II	CATG	2 cut(s)	191, 414
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	4 cut(s)	196, 688, 716, 737
Lsp1109I	GCAGC	3 cut(s)	555, 658, 752
LweI	GCATC	3 cut(s)	397, 523, 555
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	2 cut(s)	312, 463
MaeIII	GTNAC	2 cut(s)	40, 776
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	4 cut(s)	271, 290, 392, 683
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	6 cut(s)	252, 264, 496, 630, 655, 726
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	9 cut(s)	70, 124, 187, 283, 403, 476, 506, 610, 679
Mph1103I	ATGCAT	1 cut(s)	412
MseI	TTAA	6 cut(s)	66, 255, 336, 447, 524, 629
MslI	CAYNNNNRTG	2 cut(s)	222, 768
MspI	CCGG	2 cut(s)	171, 353
MunI	CAATTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	119, 356, 572, 581
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	191, 414
NlaIV	GGNNCC	2 cut(s)	55, 718
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	2 cut(s)	191, 414
OliI	CACNNNNGTG	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	710
PinAI	ACCGGT	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	94, 545, 648, 742
Ppu21I	YACGTR	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	55, 718
PspXI	VCTCGAGB	1 cut(s)	74
RsaI	GTAC	2 cut(s)	462, 502
RsaNI	GTAC	2 cut(s)	461, 501
RseI	CAYNNNNRTG	2 cut(s)	222, 768
SacI	GAGCTC	1 cut(s)	693
SaqAI	TTAA	6 cut(s)	66, 255, 336, 447, 524, 629
SatI	GCNGC	4 cut(s)	93, 544, 647, 741
Sau3AI	GATC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	3 cut(s)	397, 523, 555
SfcI	CTRYAG	1 cut(s)	504
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	2 cut(s)	222, 768
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	6 cut(s)	252, 264, 496, 630, 655, 726
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	567, 615
TaaI	ACNGT	2 cut(s)	505, 625
TaiI	ACGT	2 cut(s)	315, 466
TaqI	TCGA	2 cut(s)	75, 511
TasI	AATT	6 cut(s)	252, 264, 496, 630, 655, 726
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	710
Tru1I	TTAA	6 cut(s)	66, 255, 336, 447, 524, 629
Tru9I	TTAA	6 cut(s)	66, 255, 336, 447, 524, 629
TscAI	CASTG	2 cut(s)	229, 739
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	3 cut(s)	543, 646, 740
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	4 cut(s)	17, 84, 359, 623
TspRI	CASTG	2 cut(s)	229, 739
XceI	RCATGY	2 cut(s)	191, 414
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.