Rh2AG344300
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010112
Physical Location & Seq
Reverse (-)
50600531 .. 50603605
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG344300.1

Sequence Viewer

Length: 864 bp
ATGTCGCAGTACGGAATACAATCAATGCTGAAGGAGGGGCACAAGCACCTCTCCGGTTTGGACGAAGCGGTGGTCAAGAACATCGAGGCCTGCAAGCAACTCTCCACCATCATTCGCACTTCTCTCGGTCCCAACGGCATGAATAAGATGGTAATCAATCACTTAGATAAGCTCTTTGTCACAAATGATGGTGCCACCATTGTTAATGAACTCGAGGTTCAGCACCCTGCCGCCAAGCTTTTGGTTTTGGCAGGCAAGGCTCAACAGGAGGAGATTGGCGATGGTGCTAATCTCACCATTTCGTTCGCCGGAGAACTGCTTTCGCATGCCGAGGAGCTTATCAGGATGGGCTTGCACCCCAGTGAGATCATTAGTGGATACACGAAAGCAATTAAGAAGACAATTGAAATCTTGGAAGAACTGGTTGAGGAAGGTTCTGAGACTATGGACGTGCGTAATAAAGAACAAGTGGTTAAAAGAATGAAAGCACCGGTAGCCAGCAAGCAGTTTGGACAAGAAGAGATATTGTCCTCACTTGTTGCCGATGCATGTATACAAGTATGCCCCAAGAACCCAGCAAACTTTAATGTGGATAATGTACGTGTGGCAAAGTTCTTGGGAGGGGGTTTGCATAATTGTACTGTAGTTCGAGGTATGGCATTAAAGACTGATGCTGTTGGCAGCATCAAGAAAATGCAGAAGGCCAAGGTTGCTGTGTTTGCTGGTGGTGTTGATACCTCTGCAACTGAGACCAAGGGAACTGTCTTAATTCATACTGCTGAGCAGGTATTAGCAGAATCATATCTAATGTCCGTTTCTACAGTCTTGGTCTGTCAAAGTTATGTTTATAGCAGTATCGATTAA

Protein Analysis

287

Amino Acids

30.94

Weight (kDa)

6.09

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 34 - 263 2e-69 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 775
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 553
AciI CCGC 2 cut(s) 68, 231
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 11, 600, 640
AflIII ACRYGT 1 cut(s) 601
AgeI ACCGGT 1 cut(s) 490
AgsI TTSAA 1 cut(s) 407
AjiI CACGTC 1 cut(s) 451
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 3 cut(s) 172, 238, 337
AluI AGCT 3 cut(s) 172, 238, 337
Alw26I GTCTC 2 cut(s) 434, 743
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 2 cut(s) 87, 702
ApeKI GCWGC 1 cut(s) 681
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AsiGI ACCGGT 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 42
BanI GGYRCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 693
BccI CCATC 5 cut(s) 116, 142, 182, 275, 340
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciVI GTATCC 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 434, 743
BfmI CTRYAG 2 cut(s) 642, 819
BfuAI ACCTGC 1 cut(s) 775
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 2 cut(s) 231, 682
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 2 cut(s) 232, 683
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 130, 193
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 3 cut(s) 535, 661, 693
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 780
Bsa29I ATCGAT 1 cut(s) 858
BsaAI YACGTR 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 330, 705, 753
BsaWI WCCGGW 2 cut(s) 53, 490
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 2 cut(s) 360, 426
Bse8I GATNNNNATC 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 858
BseDI CCNNGG 3 cut(s) 330, 705, 753
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 152
BseMII CTCAG 3 cut(s) 429, 738, 771
BseNI ACTGG 2 cut(s) 360, 426
BseRI GAGGAG 2 cut(s) 284, 347
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 1 cut(s) 693
BseYI CCCAGC 1 cut(s) 574
BshFI GGCC 2 cut(s) 89, 704
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 490
BshVI ATCGAT 1 cut(s) 858
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 3 cut(s) 54, 309, 491
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 434, 743
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 89, 704
Bso31I GGTCTC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 366
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 2 cut(s) 68, 231
BspANI GGCC 2 cut(s) 89, 704
BspCNI CTCAG 3 cut(s) 430, 739, 772
BspDI ATCGAT 1 cut(s) 858
BspLI GGNNCC 2 cut(s) 130, 193
BspMI ACCTGC 1 cut(s) 775
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 743
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 2 cut(s) 360, 426
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 330, 705, 753
BssMI GATC 1 cut(s) 366
BssNAI GTATAC 1 cut(s) 554
BssT1I CCWWGG 2 cut(s) 705, 753
Bst1107I GTATAC 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 643, 763, 823
Bst6I CTCTTC 1 cut(s) 513
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 7 cut(s) 91, 95, 253, 327, 353, 499, 503
BstDEI CTNAG 4 cut(s) 163, 438, 747, 780
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 434, 743
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 4 cut(s) 257, 494, 710, 719
BstNSI RCATGY 2 cut(s) 329, 552
BstSFI CTRYAG 2 cut(s) 642, 819
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 693
BstV2I GAAGAC 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 554
Bsu15I ATCGAT 1 cut(s) 858
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 2 cut(s) 89, 704
BsuTUI ATCGAT 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 294
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 367
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 7 cut(s) 91, 95, 253, 327, 353, 499, 503
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 858
Csp6I GTAC 3 cut(s) 10, 599, 639
CspAI ACCGGT 1 cut(s) 490
CviAII CATG 3 cut(s) 139, 326, 549
CviJI RGCY 8 cut(s) 89, 172, 238, 260, 337, 351, 497, 704
CviKI_1 RGCY 8 cut(s) 89, 172, 238, 260, 337, 351, 497, 704
CviQI GTAC 3 cut(s) 10, 599, 639
DdeI CTNAG 4 cut(s) 163, 438, 747, 780
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 705, 753
Eco147I AGGCCT 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 705, 753
EcoT22I ATGCAT 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 705, 753
FaeI CATG 3 cut(s) 142, 329, 552
FaqI GGGAC 1 cut(s) 114
FatI CATG 3 cut(s) 138, 325, 548
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 231, 682
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 2 cut(s) 231, 682
GluI GCNGC 2 cut(s) 231, 682
GsaI CCCAGC 1 cut(s) 578
HaeIII GGCC 2 cut(s) 89, 704
HapII CCGG 3 cut(s) 54, 309, 491
Hin1II CATG 3 cut(s) 142, 329, 552
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 797
HpaII CCGG 3 cut(s) 54, 309, 491
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 3 cut(s) 76, 343, 688
Hpy8I GTNNAC 1 cut(s) 554
HpyAV CCTTC 3 cut(s) 25, 425, 694
HpyCH4III ACNGT 3 cut(s) 643, 763, 823
HpyCH4IV ACGT 2 cut(s) 450, 601
HpyCH4V TGCA 6 cut(s) 93, 355, 548, 631, 697, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 494, 710, 719
HpyF3I CTNAG 4 cut(s) 163, 438, 747, 780
HpySE526I ACGT 2 cut(s) 450, 601
Hsp92II CATG 3 cut(s) 142, 329, 552
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 1 cut(s) 693
LweI GCATC 3 cut(s) 535, 661, 693
MaeII ACGT 2 cut(s) 450, 601
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 3 cut(s) 409, 428, 530
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 4 cut(s) 390, 402, 634, 768
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 7 cut(s) 204, 393, 474, 585, 662, 767, 862
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 3 cut(s) 54, 309, 491
MunI CAATTG 1 cut(s) 402
MwoI GCNNNNNNNGC 4 cut(s) 257, 494, 710, 719
NdeII GATC 1 cut(s) 366
NlaIII CATG 3 cut(s) 142, 329, 552
NlaIV GGNNCC 2 cut(s) 130, 193
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 2 cut(s) 329, 552
OliI CACNNNNGTG 1 cut(s) 360
PaeI GCATGC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 212
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 1 cut(s) 797
PinAI ACCGGT 1 cut(s) 490
PkrI GCNGC 2 cut(s) 232, 683
Ppu21I YACGTR 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 130, 193
PspPI GGNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 212
RsaI GTAC 3 cut(s) 11, 600, 640
RsaNI GTAC 3 cut(s) 10, 599, 639
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 7 cut(s) 204, 393, 474, 585, 662, 767, 862
SatI GCNGC 2 cut(s) 231, 682
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 3 cut(s) 535, 661, 693
SfcI CTRYAG 2 cut(s) 642, 819
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 329
Sse9I AATT 4 cut(s) 390, 402, 634, 768
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 68, 231
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 2 cut(s) 705, 753
TaaI ACNGT 3 cut(s) 643, 763, 823
TaiI ACGT 2 cut(s) 453, 604
TaqI TCGA 4 cut(s) 84, 213, 649, 858
TaqII GACCGA 1 cut(s) 116
TasI AATT 4 cut(s) 390, 402, 634, 768
TatI WGTACW 1 cut(s) 638
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 7 cut(s) 204, 393, 474, 585, 662, 767, 862
Tru9I TTAA 7 cut(s) 204, 393, 474, 585, 662, 767, 862
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 681
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 4 cut(s) 155, 222, 497, 761
TspGWI ACGGA 2 cut(s) 27, 802
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 2 cut(s) 329, 552
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.