pycom09g15360
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010112
Physical Location & Seq
Forward (+)
15215313 .. 15218983
3671 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
ATGCAGCCCTATGGAATACAATCGATGTTGAAGGAGGGCCACAAGCACCTCTCCGGTTTGGACGAGGCGGTAGTGAAGAACATCGATGCCTGCAAGCAACTCTCCACCATCACCAGAACTTCTCTGGGTCCCAATGGTATGAATAAGATGGTAATCAATCACTTGGACAAGCTATTTGTGACGAATGATGCCGCCACGATTGTGAACGAACTGGAGGTTCAGCATCCTGCTGCCAAGATTTTGGTTTTGGCAGGCAGGGCTCAGCAGGAAGAAATCGGCGATGGTGCTAATCTCACCATTTCTTTTGCCGGAGAGCTCCTTCAAAACGCAGAGGAGCTTATAAGGATGGGCCTGCACCCAAGTGAGATAATTAGTGGATACAATAAAGCCATCAAAAAGACGATTGAAATCTTAGATGAATTGGTTGAGGAAGGTTCCGATATCATGGATGTGCGCAACAAAGAACAAGTGGTTTCTAGAATGAGAGCTGCTGTTGCCAGCAAGCAATTCGGCCAAGAAGATATCTTGTCCTCACTTGTTGCCGATGCATGTATACAAGTATGCCCCAAGAACCCAGCAAACTTCAATGTCGATAATGTACGTGTTGCGAAGATTGCAGGAGGAGGATTGCATAATTGTGCAGTAGTACGAGGTATGGTGTTGAAAACTGATGCTGTTGGGAGTATAAAGAGAATGGAGAAGGCCAAGGTTGCTGTGTTTGCTGGTGGAGTTGATACCTCTGCAACTGAGACCAAAGGAACTGTTCTAATTCATACCGCTAACCAGCTTGAAAATTATGCAAAAACTGAAGAAGCTAAAATTGAGGAGCTCGTTAAAGCAGTTGCAGATTCAGGTGCCAAAGTAATTGTCAGTGGAGCTGCAGTTGGAGAGATGGCACTACATTTCTGTGAGCGGTACAATCCAGGCTCATGGTGCTGA

Protein Analysis

313

Amino Acids

33.49

Weight (kDa)

5.81

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 34 - 307 1.3e-83 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
Acc16I TGCGCA 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 854
AccBSI CCGCTC 1 cut(s) 913
AccI GTMKAC 1 cut(s) 553
AciI CCGC 4 cut(s) 68, 192, 777, 913
AcoI YGGCCR 1 cut(s) 511
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 3 cut(s) 600, 648, 917
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 31, 323, 407, 586, 664, 791
AjnI CCWGG 1 cut(s) 922
AleI CACNNNNGTG 2 cut(s) 200, 360
AluBI AGCT 8 cut(s) 172, 316, 337, 488, 787, 815, 829, 878
AluI AGCT 8 cut(s) 172, 316, 337, 488, 787, 815, 829, 878
Alw21I GWGCWC 2 cut(s) 318, 831
Alw26I GTCTC 1 cut(s) 743
AoxI GGCC 4 cut(s) 37, 349, 511, 702
ApeKI GCWGC 4 cut(s) 4, 230, 488, 878
ArsI GACNNNNNNTTYG 4 cut(s) 158, 190, 852, 884
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 3 cut(s) 37, 128, 349
AsuHPI GGTGA 2 cut(s) 103, 286
AvaII GGWCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 3 cut(s) 262, 318, 831
Bbv12I GWGCWC 2 cut(s) 318, 831
BbvI GCAGC 4 cut(s) 16, 217, 475, 865
BccI CCATC 6 cut(s) 116, 142, 275, 340, 398, 886
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 1 cut(s) 924
BciVI GTATCC 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 879
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 5 cut(s) 5, 192, 231, 489, 879
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 5 cut(s) 6, 193, 232, 490, 880
Bme1390I CCNGG 1 cut(s) 924
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 37, 128, 349
BmiI GGNNCC 4 cut(s) 129, 130, 436, 856
BmrFI CCNGG 1 cut(s) 924
BmsI GCATC 5 cut(s) 76, 178, 232, 535, 661
BpmI CTGGAG 1 cut(s) 233
Bpu1102I GCTNAGC 1 cut(s) 261
Bsa29I ATCGAT 2 cut(s) 23, 84
BsaAI YACGTR 1 cut(s) 602
BsaBI GATNNNNATC 2 cut(s) 152, 407
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 1 cut(s) 705
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bse1I ACTGG 1 cut(s) 216
Bse8I GATNNNNATC 2 cut(s) 152, 407
BseBI CCWGG 1 cut(s) 924
BseCI ATCGAT 2 cut(s) 23, 84
BseDI CCNNGG 1 cut(s) 705
BseGI GGATG 3 cut(s) 223, 351, 454
BseJI GATNNNNATC 2 cut(s) 152, 407
BseMII CTCAG 2 cut(s) 275, 738
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 3 cut(s) 347, 636, 839
BseXI GCAGC 4 cut(s) 16, 217, 475, 865
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 2 cut(s) 338, 660
BshFI GGCC 4 cut(s) 39, 351, 513, 704
BshNI GGYRCC 1 cut(s) 854
BshVI ATCGAT 2 cut(s) 23, 84
BsiHKAI GWGCWC 2 cut(s) 318, 831
BsiSI CCGG 2 cut(s) 54, 309
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 4 cut(s) 39, 351, 513, 704
Bso31I GGTCTC 1 cut(s) 743
Bsp1286I GDGCHC 3 cut(s) 262, 318, 831
Bsp1720I GCTNAGC 1 cut(s) 261
BspACI CCGC 4 cut(s) 68, 192, 777, 913
BspANI GGCC 4 cut(s) 39, 351, 513, 704
BspCNI CTCAG 2 cut(s) 274, 739
BspDI ATCGAT 2 cut(s) 23, 84
BspLI GGNNCC 4 cut(s) 129, 130, 436, 856
BspMAI CTGCAG 1 cut(s) 883
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 1 cut(s) 743
BsrBI CCGCTC 1 cut(s) 913
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 705
BssNAI GTATAC 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 705
Bst1107I GTATAC 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 924
Bst4CI ACNGT 1 cut(s) 763
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 6 cut(s) 91, 95, 253, 353, 499, 503
BstDEI CTNAG 3 cut(s) 261, 412, 747
BstF5I GGATG 3 cut(s) 223, 351, 454
BstHHI GCGC 1 cut(s) 456
BstMAI GTCTC 1 cut(s) 743
BstMWI GCNNNNNNNGC 6 cut(s) 257, 494, 614, 710, 719, 933
BstNI CCWGG 1 cut(s) 924
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 922
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 4 cut(s) 16, 217, 475, 865
BstXI CCANNNNNNTGG 2 cut(s) 241, 930
BstZ17I GTATAC 1 cut(s) 554
Bsu15I ATCGAT 2 cut(s) 23, 84
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 4 cut(s) 39, 351, 513, 704
BsuTUI ATCGAT 2 cut(s) 23, 84
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 223, 351, 454
BtsIMutI CAGTG 1 cut(s) 877
Cac8I GCNNGC 6 cut(s) 91, 95, 253, 353, 499, 503
CfoI GCGC 1 cut(s) 456
Cfr13I GGNCC 3 cut(s) 37, 128, 349
ClaI ATCGAT 2 cut(s) 23, 84
Csp6I GTAC 3 cut(s) 599, 647, 916
CviAII CATG 3 cut(s) 445, 549, 930
CviQI GTAC 3 cut(s) 599, 647, 916
DdeI CTNAG 3 cut(s) 261, 412, 747
EaeI YGGCCR 1 cut(s) 511
Ecl136II GAGCTC 2 cut(s) 316, 829
Eco130I CCWWGG 1 cut(s) 705
Eco24I GRGCYC 3 cut(s) 262, 318, 831
Eco31I GGTCTC 1 cut(s) 743
Eco32I GATATC 2 cut(s) 442, 523
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 2 cut(s) 316, 829
Eco57I CTGAAG 1 cut(s) 828
EcoICRI GAGCTC 2 cut(s) 316, 829
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 922
EcoRV GATATC 2 cut(s) 442, 523
EcoT14I CCWWGG 1 cut(s) 705
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 3 cut(s) 262, 318, 831
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 3 cut(s) 448, 552, 933
FaqI GGGAC 1 cut(s) 114
FatI CATG 3 cut(s) 444, 548, 929
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 5 cut(s) 5, 192, 231, 489, 879
FokI GGATG 3 cut(s) 210, 358, 461
FriOI GRGCYC 3 cut(s) 262, 318, 831
Fsp4HI GCNGC 5 cut(s) 5, 192, 231, 489, 879
FspBI CTAG 1 cut(s) 477
FspI TGCGCA 1 cut(s) 455
GlaI GCGC 1 cut(s) 455
GluI GCNGC 5 cut(s) 5, 192, 231, 489, 879
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 4 cut(s) 39, 351, 513, 704
HapII CCGG 2 cut(s) 54, 309
HhaI GCGC 1 cut(s) 456
Hin1II CATG 3 cut(s) 448, 552, 933
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HinfI GANTC 1 cut(s) 848
HpaII CCGG 2 cut(s) 54, 309
HphI GGTGA 2 cut(s) 103, 286
Hpy166II GTNNAC 2 cut(s) 205, 554
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 1 cut(s) 477
Hpy8I GTNNAC 2 cut(s) 205, 554
HpyAV CCTTC 4 cut(s) 25, 329, 425, 694
HpyCH4III ACNGT 1 cut(s) 763
HpyCH4IV ACGT 1 cut(s) 601
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 494, 614, 710, 719, 933
HpyF3I CTNAG 3 cut(s) 261, 412, 747
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 3 cut(s) 448, 552, 933
HspAI GCGC 1 cut(s) 454
KflI GGGWCCC 1 cut(s) 128
LmnI GCTCC 4 cut(s) 321, 334, 826, 875
Lsp1109I GCAGC 4 cut(s) 16, 217, 475, 865
LweI GCATC 5 cut(s) 76, 178, 232, 535, 661
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 913
MboII GAAGA 5 cut(s) 88, 281, 530, 622, 821
MhlI GDGCHC 3 cut(s) 262, 318, 831
MluCI AATT 8 cut(s) 369, 419, 506, 634, 768, 793, 819, 864
MmeI TCCRAC 1 cut(s) 865
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 1 cut(s) 834
MslI CAYNNNNRTG 5 cut(s) 200, 360, 449, 636, 906
MspI CCGG 2 cut(s) 54, 309
MspR9I CCNGG 1 cut(s) 924
MvaI CCWGG 1 cut(s) 924
MwoI GCNNNNNNNGC 6 cut(s) 257, 494, 614, 710, 719, 933
NlaIII CATG 3 cut(s) 448, 552, 933
NlaIV GGNNCC 4 cut(s) 129, 130, 436, 856
NmuCI GTSAC 1 cut(s) 178
NsbI TGCGCA 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 1 cut(s) 552
OliI CACNNNNGTG 2 cut(s) 200, 360
PfeI GAWTC 1 cut(s) 848
PkrI GCNGC 5 cut(s) 6, 193, 232, 490, 880
Ppu21I YACGTR 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 128
PsiI TTATAA 1 cut(s) 341
Psp124BI GAGCTC 2 cut(s) 318, 831
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 922
PspN4I GGNNCC 4 cut(s) 129, 130, 436, 856
PspPI GGNCC 3 cut(s) 37, 128, 349
PspPPI RGGWCCY 1 cut(s) 128
PstI CTGCAG 1 cut(s) 883
RsaI GTAC 3 cut(s) 600, 648, 917
RsaNI GTAC 3 cut(s) 599, 647, 916
RseI CAYNNNNRTG 5 cut(s) 200, 360, 449, 636, 906
SacI GAGCTC 2 cut(s) 318, 831
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 5 cut(s) 5, 192, 231, 489, 879
Sau96I GGNCC 3 cut(s) 37, 128, 349
ScrFI CCNGG 1 cut(s) 924
SduI GDGCHC 3 cut(s) 262, 318, 831
SfaNI GCATC 5 cut(s) 76, 178, 232, 535, 661
SfcI CTRYAG 1 cut(s) 879
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 5 cut(s) 200, 360, 449, 636, 906
Sse9I AATT 8 cut(s) 369, 419, 506, 634, 768, 793, 819, 864
SsiI CCGC 4 cut(s) 68, 192, 777, 913
SspMI CTAG 1 cut(s) 477
SstI GAGCTC 2 cut(s) 318, 831
StyD4I CCNGG 1 cut(s) 922
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 1 cut(s) 763
TaiI ACGT 1 cut(s) 604
TaqI TCGA 3 cut(s) 23, 84, 591
TasI AATT 8 cut(s) 369, 419, 506, 634, 768, 793, 819, 864
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 4 cut(s) 4, 230, 488, 878
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 155, 432, 761
TspRI CASTG 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 476
XceI RCATGY 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 553
XspI CTAG 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.