pycom09g16120

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011237
Physical Location & Seq
Forward (+)
16194101 .. 16195673
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1071 bp
ATGGATTCAACGGCTATATCGACATCAACGACAACGCCCCCTTATCATGTTCATTCTCGGTCCGAGCCGCCGTCCCGAGCCAAGTCAGCCTCACGCCTTGCCCAGTGCGAGCATGTCCCTCATCTCTCTCTCGGCCTCATAAAATCATCACCCAAGATGACTCCATCGCCTTCCACTCATTCCCTCAAATCTTCCGAGTCGCTACCTCTTCGCGAGCTACTGCTTCTTTCGCCTTCCCCTTTACGAAAAAGATCCAAGACCCGTCTCATGGATCGCCTTGAAATGGCTGACGATCCTGCTGTCGAGGTTCCAGGGCTGCGCCGTAAGTGCAAAAGCAGAGGCTCGCAGATGGGCCTACTGGGTGCCTCGCCGAGGAACCGGAGGTCACGGAGGCGGTCGGAGAATGAGACTCGAGATGAGAAAGTCTCGGGCTTGGTGGAGGAGGTTGTGAAGCCAAGAAAAAGGCGGTCCAAGAAGGAAAAGCTGGACTTGGTTCTCAGTTTGCCATCCCCAAGTTCATCATCAATCGATGATGAGTATCGGGGTAGTCTTGATCGAATCGGGCAGCTCATGACTGATCTGATTATGTGGAGAGATGTTGCAAGGTCGAGCCTTTGGTTTGGTTTGGGGTCGCTCTTCTTCCTTTCCTCTTGCTTTGCCAAAGGAATCAACTTTAGCATGTTCTCAGCGATTTCCCAAATTGGACTTTTGTTTTTGGGTGCTTCATTTGTCTCCAATTCAATCTGTCAAAGAAATAACACCGAAAAGAAGTGTGATCGATTATTACTCAAAGAAGGTGACATTCTTGGTGTGGCCAAAAGGATACTACCTGCTGTAAATCTTGCCCTATCAAAGACGAGAGCGCTTTTCTCAGGAGAGCCATCCATGACCCTCAGGGTAGCTCCGTTCTTTCTTCTCGGAGCAGAGTATGGGCATCTTATAACATTTTGGAGGCTCTGTATGCTTGCTTTTTTTATCAGCTTCACAATCCCAAAACTATACTCATGCTACTCTATTCAAATCAACCAAAAAGGTATCCACAATCCACCAATCTACTTTAAAATCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

357

Amino Acids

39.88

Weight (kDa)

10.07

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 192 - 343 2e-29 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20590 AT2G20590 AT2G20590
fragaria_vesca FvH4_6g26620 FvH4_6g26620 FvH4_6g26620
malus_domestica MD09G1242900.v1.1
prunus_persica Prupe.3G132900_v2.0.a1 Prupe.3G133200_v2.0.a1
pyrus_communis pycom09g16120
rosa_chinensis RchiOBHm_Chr2g0127351
rosa_laevigata RLG00000018965
rosa_multiflora Rmu_ssc0000018.1_g000044
rosa_roxburghii Rroxscaffold_2G00116360
rosa_rugosa Rorug02G0275000
rosa_samantha Rh2AG326100 Rh2BG335600 Rh2CG313800 Rh2DG353300
rosa_wichuraiana Rw2G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 838
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 68, 394, 466
AclWI GGATC 3 cut(s) 246, 279, 287
AcoI YGGCCR 1 cut(s) 813
AfeI AGCGCT 1 cut(s) 864
AfiI CCNNNNNNNGG 3 cut(s) 268, 283, 372
AgsI TTSAA 4 cut(s) 9, 281, 741, 1019
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 5 cut(s) 217, 484, 568, 902, 981
AluI AGCT 5 cut(s) 217, 484, 568, 902, 981
Alw26I GTCTC 4 cut(s) 269, 401, 430, 736
AlwI GGATC 3 cut(s) 246, 279, 287
Ama87I CYCGRG 3 cut(s) 75, 411, 427
Aor51HI AGCGCT 1 cut(s) 864
AoxI GGCC 3 cut(s) 133, 352, 813
ApeKI GCWGC 2 cut(s) 316, 565
AspLEI GCGC 2 cut(s) 321, 865
AspS9I GGNCC 3 cut(s) 60, 352, 468
AsuHPI GGTGA 2 cut(s) 141, 809
AvaI CYCGRG 3 cut(s) 75, 411, 427
AvaII GGWCC 2 cut(s) 60, 468
AxyI CCTNAGG 1 cut(s) 893
BalI TGGCCA 1 cut(s) 815
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 303, 577
BccI CCATC 4 cut(s) 172, 343, 514, 889
BceAI ACGGC 3 cut(s) 27, 55, 306
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 2 cut(s) 816, 1046
BcoDI GTCTC 4 cut(s) 269, 401, 430, 736
BfoI RGCGCY 1 cut(s) 866
BfuAI ACCTGC 1 cut(s) 838
BfuI GTATCC 2 cut(s) 816, 1046
BisI GCNGC 3 cut(s) 68, 317, 566
BlsI GCNGC 3 cut(s) 69, 318, 567
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 60, 468
BmeT110I CYCGRG 3 cut(s) 75, 411, 427
BmgT120I GGNCC 3 cut(s) 60, 352, 468
BmiI GGNNCC 3 cut(s) 309, 364, 377
BmrFI CCNGG 1 cut(s) 312
BmrI ACTGGG 2 cut(s) 97, 368
BmsI GCATC 1 cut(s) 943
BmuI ACTGGG 2 cut(s) 97, 368
BplI GAGNNNNNCTC 2 cut(s) 410, 442
Bsa29I ATCGAT 2 cut(s) 528, 778
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 2 cut(s) 311, 371
BsaWI WCCGGW 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 943, 973
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 283, 372
Bse1I ACTGG 2 cut(s) 103, 363
Bse21I CCTNAGG 1 cut(s) 893
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 312
BseCI ATCGAT 2 cut(s) 528, 778
BseDI CCNNGG 2 cut(s) 311, 371
BseGI GGATG 2 cut(s) 506, 881
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 268, 283, 372
BseMII CTCAG 4 cut(s) 511, 699, 885, 907
BseNI ACTGG 2 cut(s) 103, 363
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 303, 577
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 3 cut(s) 135, 354, 815
BshNI GGYRCC 1 cut(s) 362
BshVI ATCGAT 2 cut(s) 528, 778
BsiEI CGRYCG 1 cut(s) 398
BsiHKCI CYCGRG 3 cut(s) 75, 411, 427
BsiSI CCGG 1 cut(s) 379
BslFI GGGAC 2 cut(s) 58, 101
BslI CCNNNNNNNGG 3 cut(s) 268, 283, 372
BsmAI GTCTC 4 cut(s) 269, 401, 430, 736
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 58, 101
BsnI GGCC 3 cut(s) 135, 354, 815
BsoBI CYCGRG 3 cut(s) 75, 411, 427
Bsp143I GATC 6 cut(s) 251, 271, 292, 553, 577, 775
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 3 cut(s) 68, 394, 466
BspANI GGCC 3 cut(s) 135, 354, 815
BspCNI CTCAG 4 cut(s) 510, 698, 884, 906
BspDI ATCGAT 2 cut(s) 528, 778
BspFNI CGCG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 3 cut(s) 309, 364, 377
BspMI ACCTGC 1 cut(s) 838
BspPI GGATC 3 cut(s) 246, 279, 287
BspQI GCTCTTC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 103, 363
BssECI CCNNGG 2 cut(s) 311, 371
BssMI GATC 6 cut(s) 251, 271, 292, 553, 577, 775
Bst2UI CCWGG 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 213, 641
BstC8I GCNNGC 4 cut(s) 110, 215, 344, 966
BstDEI CTNAG 4 cut(s) 497, 685, 871, 893
BstENI CCTNNNNNAGG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 506, 881
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 866
BstHHI GCGC 2 cut(s) 321, 865
BstKTI GATC 6 cut(s) 254, 274, 295, 556, 580, 778
BstMAI GTCTC 4 cut(s) 269, 401, 430, 736
BstMBI GATC 6 cut(s) 251, 271, 292, 553, 577, 775
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 4 cut(s) 86, 229, 327, 961
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 116, 682
BstSCI CCNGG 1 cut(s) 310
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 303, 577
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
Bsu15I ATCGAT 2 cut(s) 528, 778
Bsu36I CCTNAGG 1 cut(s) 893
BsuI GTATCC 2 cut(s) 816, 1046
BsuRI GGCC 3 cut(s) 135, 354, 815
BsuTUI ATCGAT 2 cut(s) 528, 778
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 506, 881
BtsIMutI CAGTG 1 cut(s) 110
BtuMI TCGCGA 1 cut(s) 213
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 4 cut(s) 110, 215, 344, 966
CciI TCATGA 1 cut(s) 570
CfoI GCGC 2 cut(s) 321, 865
Cfr13I GGNCC 3 cut(s) 60, 352, 468
ClaI ATCGAT 2 cut(s) 528, 778
CpoI CGGWCCG 1 cut(s) 60
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 7 cut(s) 47, 113, 268, 571, 679, 886, 1005
DdeI CTNAG 4 cut(s) 497, 685, 871, 893
DpnI GATC 6 cut(s) 253, 273, 294, 555, 579, 777
DpnII GATC 6 cut(s) 251, 271, 292, 553, 577, 775
DraI TTTAAA 1 cut(s) 1060
EaeI YGGCCR 1 cut(s) 813
Eam1104I CTCTTC 2 cut(s) 213, 641
EarI CTCTTC 2 cut(s) 213, 641
Eco47I GGWCC 2 cut(s) 60, 468
Eco47III AGCGCT 1 cut(s) 864
Eco81I CCTNAGG 1 cut(s) 893
Eco88I CYCGRG 3 cut(s) 75, 411, 427
EcoNI CCTNNNNNAGG 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 7 cut(s) 50, 116, 271, 574, 682, 889, 1008
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 2 cut(s) 58, 101
FatI CATG 7 cut(s) 46, 112, 267, 570, 678, 885, 1004
Fnu4HI GCNGC 3 cut(s) 68, 317, 566
FokI GGATG 2 cut(s) 493, 868
Fsp4HI GCNGC 3 cut(s) 68, 317, 566
GlaI GCGC 2 cut(s) 320, 864
GluI GCNGC 3 cut(s) 68, 317, 566
HaeII RGCGCY 1 cut(s) 866
HaeIII GGCC 3 cut(s) 135, 354, 815
HapII CCGG 1 cut(s) 379
HhaI GCGC 2 cut(s) 321, 865
Hin1II CATG 7 cut(s) 50, 116, 271, 574, 682, 889, 1008
Hin6I GCGC 2 cut(s) 319, 863
HinP1I GCGC 2 cut(s) 319, 863
HinfI GANTC 6 cut(s) 5, 160, 197, 409, 558, 666
HpaII CCGG 1 cut(s) 379
HphI GGTGA 2 cut(s) 141, 809
Hpy188I TCNGA 5 cut(s) 64, 196, 400, 582, 920
Hpy188III TCNNGA 6 cut(s) 75, 212, 413, 551, 571, 873
HpyAV CCTTC 4 cut(s) 180, 243, 469, 788
HpyCH4V TGCA 2 cut(s) 330, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 229, 327, 961
HpyF3I CTNAG 4 cut(s) 497, 685, 871, 893
Hsp92II CATG 7 cut(s) 50, 116, 271, 574, 682, 889, 1008
HspAI GCGC 2 cut(s) 319, 863
Kzo9I GATC 6 cut(s) 251, 271, 292, 553, 577, 775
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 2 cut(s) 907, 920
Lsp1109I GCAGC 2 cut(s) 303, 577
LweI GCATC 1 cut(s) 943
MaeIII GTNAC 2 cut(s) 384, 797
MalI GATC 6 cut(s) 253, 273, 294, 555, 579, 777
MboI GATC 6 cut(s) 251, 271, 292, 553, 577, 775
MboII GAAGA 5 cut(s) 183, 200, 628, 631, 905
MflI RGATCY 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 815
MluCI AATT 2 cut(s) 699, 736
MluNI TGGCCA 1 cut(s) 815
MlyI GAGTC 3 cut(s) 154, 206, 403
MmeI TCCRAC 1 cut(s) 378
Mox20I TGGCCA 1 cut(s) 815
MscI TGGCCA 1 cut(s) 815
MseI TTAA 1 cut(s) 1059
Msp20I TGGCCA 1 cut(s) 815
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 4 cut(s) 86, 229, 327, 961
NdeII GATC 6 cut(s) 251, 271, 292, 553, 577, 775
NlaIII CATG 7 cut(s) 50, 116, 271, 574, 682, 889, 1008
NlaIV GGNNCC 3 cut(s) 309, 364, 377
NmeAIII GCCGAG 2 cut(s) 111, 396
NmuCI GTSAC 2 cut(s) 384, 797
NruI TCGCGA 1 cut(s) 213
NspI RCATGY 2 cut(s) 116, 682
PaeR7I CTCGAG 1 cut(s) 411
PagI TCATGA 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 26
PfeI GAWTC 3 cut(s) 5, 558, 666
PkrI GCNGC 3 cut(s) 69, 318, 567
PleI GAGTC 3 cut(s) 154, 205, 403
PpsI GAGTC 3 cut(s) 154, 205, 403
PsiI TTATAA 1 cut(s) 941
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 309, 364, 377
PspPI GGNCC 3 cut(s) 60, 352, 468
PsuI RGATCY 1 cut(s) 251
RruI TCGCGA 1 cut(s) 213
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 1 cut(s) 1059
SatI GCNGC 3 cut(s) 68, 317, 566
Sau3AI GATC 6 cut(s) 251, 271, 292, 553, 577, 775
Sau96I GGNCC 3 cut(s) 60, 352, 468
SchI GAGTC 3 cut(s) 154, 206, 403
ScrFI CCNGG 1 cut(s) 312
SfaNI GCATC 1 cut(s) 943
Sfr274I CTCGAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 60, 468
SlaI CTCGAG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
Sse9I AATT 2 cut(s) 699, 736
SsiI CCGC 3 cut(s) 68, 394, 466
StyD4I CCNGG 1 cut(s) 310
TaqI TCGA 7 cut(s) 20, 303, 412, 528, 556, 608, 778
TaqII GACCGA 1 cut(s) 48
TasI AATT 2 cut(s) 699, 736
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 3 cut(s) 5, 558, 666
Tru1I TTAA 1 cut(s) 1059
Tru9I TTAA 1 cut(s) 1059
TscAI CASTG 1 cut(s) 110
TseFI GTSAC 2 cut(s) 384, 797
TseI GCWGC 2 cut(s) 316, 565
Tsp45I GTSAC 2 cut(s) 384, 797
TspDTI ATGAA 3 cut(s) 41, 507, 714
TspGWI ACGGA 2 cut(s) 403, 894
TspRI CASTG 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 60, 468
XagI CCTNNNNNAGG 1 cut(s) 370
XceI RCATGY 2 cut(s) 116, 682
XhoI CTCGAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.