Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003911

Physical Location & Seq

Genomic Coordinates Reverse (-)

17836383 .. 17855243

Gene Structure 18861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5613 bp

ATGTCTCTCCCACCCGTAGAGCGTGCGTACGTCACAGAGGACTGCCTTCGTCAATGGAAGAATGGAAACCCTAGTTTCAAGCTCCCGGACCCTGTTCCGATGCTTCGATTTCTCTACGAGCTCTGTTCCACCATGGTATGTGGGGAACTGCCGCTTCACAAGTGTAAAGCGGCCTTGGATTCGGTTGAGTTCTCGGACGAGGTTTCGGACCAAGACTTGCCTTCCTGTTTTGTGGATATCATCACCCAATTGTCTCAAGATATTAGAATGCCTGGAGAGGATCGTGCTCGTCTAGTAAAATTGGCCAAATGGTTGGTGGAATCTTCCTTAGTTCCGTTGAGACTTTTCCAGGAGCGCTGTGAGGAAGAATTTTTGTGGGAGGCTGAAATGATCAAGATAAAGGCTCAGGAATTGAAGAGTAAAGAGGTCAGAGTAAATACCCGTCTTCTATATCAGCAAACAAAATTTAACCTTCTCCGAGAAGAGAGTGAGGGCTATGCCAAGCTGGTTACTCTTCTTTGCCAAAACTCAGAAACTTCATCACACAATGCAGCAGCAACAATAGGAATTATAAAGTCATTAATTGGGCATTTTGATCTGGACCCAAATCATGTTTTCGATATTGTTTTGGAGTGCTTTGAACTTCAACCAGATAGTGATGTCTTTTTGGAGCTGATACCAATTTTTCCAAAGTCTCATGCTTCACAAGTCCTTGGTTTCAAATTTCAATACTATCAGCGTTTGGAAGTAAATAGTCCAGTACCATTTGGACTTTATAAGCTAACAGCTTTGCTGGTGAAAGAGGACTTTATTGATCTTGATAGCATATATGCTCATCTACTTCCCAAGGACAATGAGGCATTTGAGCATTATAGTGCTTTCTCTTCCAAGCGACTTGATGAGGCTAATAAAATTGGTAAAATAAATCTTGCTGCAACCGGGAAGGATCTGATGGATGATGAGAAACAAGGAGATGTGACAATAGATTTTTTTGTCGCTTTAGACATGGAAACAGGTGCAGTTTGTGAGCGGTCTGCAGAGTGTGAAAATAATCAAACTTTGGGCTTGCTTACTGGTTTTCTTTCCGTAGATGACTGGTACCATGCACATCTACTATTTGAGCGGCTCTCAACTCTCCATCCTGTTGAACATATTCAAATCTGCGACAGCTTGTTTAGGCTCATTGAAAAATCAATCTCTTCTGCTTATGACACTGTTCGTCGAGCACATCTTCCAATATTTGGGGCTTCCTCAGGAACTAGTATTGATGTGATGAATACAGAAAATGTATCAATCCATGGATCATTTATAGAACTTCCAAAAGAACTTTTTCAGATGCTTGCTTGTGCTGGACCATATCTTTATCGTAATACTTTGTTGCTGCAGAAGGTATGTAGAGTATTGAGAGGTTATTACTCGTCTGCGCTTCAGCTTGTAAACAGTGGTGAAGGAGTCATAGATCCCAATCATGTTTTTGGAGGTAATCCTCGTCTGCATCTTAAGGAAGCAAGGTCAAGGATAGAGGAAGCTTTGGGAACGTGTCTACTTCCTTCTTTACAATTGGTACCTGCAAATCCAGCTGTTGGACAGGAGATCTGGGAAGTGATGAATCTACTTCCCTATGAGGCGCGGTATCGTTTATATGGTGAGTGGGAGAAAGAAGATGAGCAGATTCCTATGGTTTTAGCTGCAAGACAAACAGCCAAGTTGGACACAAGAAGAATTTTGAAACGGCTTGCAAAAGAAAATTTGAAGCAGCTGGGTCGGATGGTTGCAAAATTAGCTCACGCAAATCCAATGACTGTACTAAGAACAATTGTTCATCAGATTGAGGCGTACAGAGATATGATTGCTCCTGTTGTAGATGCATTTAAGTATTTGACTCAGCTGGAGTATGACGTTTTGGAATATGTTGTCATTGAGCGTCTGGCTCAAGGAGGTCGTGACAAGCTAAAAGATGATGGACTTAATTTGTCAGACTGGCTTCAATCTTTGGCTTCATTTTGGGGTCACTTGTGTAAGAAATACCCATCTATGGAATTGAGGGGGCTTTTCCAGTATCTTGTGAACCAACTAAAAAAGGGCCAAGGAATTGAACTGGTTCTCCTCGAGGAGCTTGTTCAGCAAATGGCAAATGTCCATTACACTGAGAATCTGACTGATGATCAACTGGATGCCATGGCAGGCAGTGAGACGCTGCGTTATCAGGCAACTTCTTTCGGTGTTACTCGTAATAACAAGGCACTAATCAAGTCCACCAACAGGCTAAGAGACTCACTGCTACCAAAGGATGAATCCAAGTTGGCAATCCCCCTTCTAATACTTCTTGCTCAGCATCGTTCTGTGGTCATAATAGAGGCAAATGCACCTTACATCAAGATGGTTAGTGAACAGTTTGATAGATGTCATGGAACCCTCCTTCAATTTGTGGAATTTCTTTGCTGTGCTGTGACACCGGCATCGGCTTATGCTCAGCTAATTCCTTCGCTTGATGATCTTGTTCACAAATACCATCTTGATCCAGAGGTTGCTTTCTTAATTTATCGCCCTGTAATGAGGCTCTTCAAGTGCCAAGGGAGTTCTGATGTCTTCTGGCCTCTAGACAATATTGACACTCAAAGTATCATGTCTGCAAGTTCAGAGTCTGAAGCTACAGAGCATTCTGGAAATGTGGTTCTGGATCTTGGGTCTCCATGGAAGTCTATAACGTGGTCGGATCTTCTTAGTACTGCTGAAAGGATGCTGCCTTCAAAATCCTGGAATAGCCTGTCACCTGATCTCTTTACTACATTTTGGGGGCTCACGCTCTATGATCTTTATGTCCCTAGAAATTGTTATGAGGCTGAAATTGCAAAGCAGCATGCTGCTCTTAAAGCTCTGGAAGAGATTTCTGATAATTCAAGTTCAGCAATAACCAAACGGAAGAAAGAAAAAGAAAGAATTCAAGAATCCCTAGATCGCCTGACTAGCGAACTCCGTAAGCATGAAGAAAACGTCGCATCCGTTCGTAAACGCTTATCTCGGGAGAAGGACAAATGGTTGAGTTCTTGCCCTGATACTTTGAAGATCAACATGGAGTTCCTTCAGCGTTGTATATTTCCACGCTGTACTTTCAGTATGCCAGATGCTGTGTATTGTGCCATGTTTGTGCACACTCTTCATTCCCTTGGGACACCATTTTTTAACACAGTCAACCACATTGATGTTCTCATCTGTAAAACCTTGCAGCCTATGATATGCTGCTGTACTGAATATGAAGTAGGTAGACTTGGGAAGTTTCTCTGTGAGACGTTGAGGATTGCTTACTATTGGAAGAGCGATGAATCTATTTATGAACGCGAATGTGGAAACATGCCAGGCTTTGCTGTATATTATAGATATCCAAATAGCCAGAGAGTTACTTATGGCCAGTTCATCAAGGTTCACTGGAAATGGAGTCAAAGGATTACAAAGTTATTGATTCAATGTCTGGAATCAACCGAGTACATGGAAATTCGAAATGCACTCATAATGTTGACAAAAATATCTAGTGTTTTTCCAGTTACTCGAAAAACTGGGATTAATCTTGAAAAACGGGTTTCCAAGATAAAGGGTGACGAGAGAGAGGACCTCAAGGTGCTGGCAACAGGTGTCTGTGCCTCTCTTGCTGCTAAAAAGCCTTCATGGGTTTCAGATGAGGAATTTGGTAACGGACATCTTGATTTAAAGAATGGACAAAATGGGTCAAAGTCTTCTGCTGGTAATTCAATAGCTGCACAGGGTGAACCTATGGGAGGAAGAGTTGGAGCTGTACCCTCCCAACACTCAGATTCAATGAACTCAGGCAAAGACCCGACTCTAAAAAGAAAACTTGTAGATGGGAGGTTGGAAAGAGGTGAAAGTAGCCCAACTGCAAAATCTGATCAAGGGCATGTAAAACTTAAAGCTAGCTCATCGGTGAATGGGTCAGATGCGAAGCCATCAATAACCTCAGCTGCTTTCCAACCTGCAACGGCAAGATCTATTGAAAATAAAAAACAAGTGAATGAATTCTCGAATAAAGCCTCAGATGAAAACATGGGAAAAGCTGCACCAAAGAACTCTACAGAATCTGAGTTGAGAGCTCAAGCAAAACGGTCAGTTCCTACTGGATCGCTTGCTAAGCCGCTGAAACAAGATGTTGCAAAAGATGATAGTAGATCTGGAAAAGCAATTGGCAGAACTTCTAGTATGAGTGACAGAGATATTCCGTCCCATGCATCAGCTGGGACTTCAAATGTTTCCTCTTCTGCCACAGTAAATGGTAACACAGATTCAGCGTCAGCTAAAGGTTCAGCTTCATTTGCGAGGACTGACATTCATGGTTCTGAATCAAAGGTGGAGGTTGCAGCTGCAAAATCTTCGAATACAAGGATTTCTGCTCCGAAGGAAGATGGTGGTGAAAATTCAGATGCACCAAGGCCCCATTCTTCTCGACTTGTCCACTCTCCTAGGCATGATAATTCTGCTGCTGCTTCAAAATCTAGTGATAAGCTGCAAAAGAGAACCAGTCCTGAAGAAACTGACAGACAGAGCAAACGGCGGAAAGGGACAACTGAAGTGAGAGATTTTGAGGGCGAAGCTCGAGTGTCAGACCGAGAGAGGTCTGTTGATGCTCGACTGTTGGATCCTGAAAATTCAGGTACTGATCATCAAAGTGTTCACAAGGCCACTGATAAGCCTTCTGACCGGTCCAAAGATAAGGGCAATGAAAGACATGAAAAGGATTATAGGGAAAGATTGGAGCGTCCTGAAAAGTCGCGTGGAGATGATTTGAATGAGAGATCCAGGGACAGGTCAATGGAGAGACATGGAAGGGAGCGTTCAGTAGAGAAACTTCAGGAGAGGGGTATGGATAGGAATTTGGATAGACTTCCTGACAAATCTAAGGATGACAGAGGTAAAGTAAGGTACAATGATGTATCAGCGGAAAAATCTCATGTTGATGATCGATATCATGGACAAAGCTTACCTCCGCCACCACCCTTACCTCCTCACATGCTTCCACATTCTGTTAGTTCTGCTAAAAGAGATGAAGATGAAGATAGAAGGTTTGGAACTACAAGGCATACTCAGAGGCTTTCCCCGAGGCATGATGAGAAGGACCGTAGACGATCTGAAGATAATTCCTTAATTTCTCAAGATGATTCAAAACGTAGAAGAGAAGATGATTTTCGAGAAAGAAAGCGCGAAGATCGTGAGGGGCTGTCAATAAAGGTAGAGGAGCGGGAACGGGAGAGGGACAGAGAGAGGGAGAAAGCAACCCTCTTGAAGGAGGATACAGATGCAACTGCGGCTTCTAAGAGGCGGAAACTTAAAAGAGAGCATCTGCCTTCCGGGGAAGCAGGTGAGTATTCACCAGTTCCCCCTCCACCTCCTCTTTCAATTAGTTTGTCCCAGTCATACGATGGAAGGGATAGGGGAGACCGAAAAGGACCCATTGTCCAGCGGTCAGGTTACTTGGAGGAACCAAGTCCGAGGATTCATGGTAAAGAAGTACCCAGCAAAATGGCTCGTCGTGACACTGACCCGATGTATGAATGGGAGGATGAGAAAAGGCAAAGAGCTGAACAAAAGCGAAGGCATCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

1871

Amino Acids

211.77

Weight (kDa)

7.0

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC2_N	PF16134	37 - 409	2.6e-46	THO complex subunit 2 N-terminus
THOC2_N	PF16134	429 - 589	2.7e-19	THO complex subunit 2 N-terminus
Thoc2	PF11732	591 - 666	1.3e-29	Transcription- and export-related complex subunit
Tho2	PF11262	920 - 1215	3.1e-98	Transcription factor/nuclear export subunit protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706
fragaria_vesca	FvH4_4g33200 FvH4_4g33200 FvH4_4g33200
malus_domestica	MD09G1258800.v1.1
prunus_persica	Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1
pyrus_communis	pycom09g17360
rosa_chinensis	RchiOBHm_Chr4g0442311
rosa_laevigata	RLG00000006018
rosa_multiflora	Rmu_sc0000124.1_g000055
rosa_roxburghii	Rroxscaffold_5G00383170
rosa_rugosa	Rorug04G0340300 Rorug04G0340400
rosa_samantha	Rh4AG391900 Rh4BG405400 Rh4CG420600 Rh4DG398700
rosa_wichuraiana	Rw4G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	572, 777
AarI	CACCTGC	1 cut(s)	5354
AbsI	CCTCGAGG	1 cut(s)	2108
Acc36I	ACCTGC	3 cut(s)	1576, 3994, 5354
Acc65I	GGTACC	2 cut(s)	1098, 1564
AccB1I	GGYRCC	2 cut(s)	1098, 1564
AccB7I	CCANNNNNTGG	2 cut(s)	1241, 1583
AccBSI	CCGCTC	3 cut(s)	1030, 1123, 5245
AccI	GTMKAC	3 cut(s)	1543, 3265, 5128
AccII	CGCG	4 cut(s)	1630, 3339, 4780, 5208
AcoI	YGGCCR	2 cut(s)	303, 3406
AcuI	CTGAAG	7 cut(s)	1412, 2667, 3068, 4554, 4596, 4841, 5157
AdeI	CACNNNGTG	1 cut(s)	3761
AfeI	AGCGCT	1 cut(s)	356
AfiI	CCNNNNNNNGG	7 cut(s)	1241, 1583, 2035, 2262, 3773, 4812, 5290
AflII	CTTAAG	1 cut(s)	1499
AflIII	ACRYGT	1 cut(s)	1538
AgeI	ACCGGT	1 cut(s)	4707
AhdI	GACNNNNNGTC	1 cut(s)	5459
AhlI	ACTAGT	1 cut(s)	1259
AjnI	CCWGG	5 cut(s)	271, 348, 2756, 3355, 4805
AjuI	GAANNNNNNNTTGG	2 cut(s)	4429, 4461
AloI	GAACNNNNNNTCC	4 cut(s)	2088, 2120, 2658, 2690
Alw21I	GWGCWC	5 cut(s)	123, 289, 1228, 3153, 4105
Alw44I	GTGCAC	1 cut(s)	3149
AlwNI	CAGNNNCTG	4 cut(s)	2645, 3128, 4091, 4664
Ama87I	CYCGRG	4 cut(s)	2108, 3021, 4602, 5104
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	7 cut(s)	171, 303, 2083, 2594, 3406, 4439, 4686
ApaLI	GTGCAC	1 cut(s)	3149
AseI	ATTAAT	2 cut(s)	581, 3561
AsiGI	ACCGGT	1 cut(s)	4707
Asp700I	GAANNNNTTC	5 cut(s)	1152, 1329, 2100, 2940, 4028
Asp718I	GGTACC	2 cut(s)	1098, 1564
AspA2I	CCTAGG	1 cut(s)	4469
AspLEI	GCGC	4 cut(s)	357, 1426, 1630, 5208
AsuC2I	CCSGG	3 cut(s)	86, 940, 5356
AsuII	TTCGAA	2 cut(s)	3496, 4382
AsuNHI	GCTAGC	1 cut(s)	3926
AvaI	CYCGRG	4 cut(s)	2108, 3021, 4602, 5104
AvaII	GGWCC	8 cut(s)	88, 208, 601, 1352, 3607, 4710, 5122, 5453
AvrII	CCTAGG	1 cut(s)	4469
AxyI	CCTNAGG	1 cut(s)	1252
BaeGI	GKGCMC	1 cut(s)	3153
BalI	TGGCCA	2 cut(s)	305, 3408
BamHI	GGATCC	1 cut(s)	4645
BanI	GGYRCC	2 cut(s)	1098, 1564
BanII	GRGCYC	3 cut(s)	123, 2802, 4105
BarI	GAAGNNNNNNTAC	2 cut(s)	4839, 4871
BbsI	GAAGAC	3 cut(s)	437, 2581, 3723
Bbv12I	GWGCWC	5 cut(s)	123, 289, 1228, 3153, 4105
BbvCI	CCTCAGC	1 cut(s)	3970
BceAI	ACGGC	3 cut(s)	1748, 4008, 4574
BcgI	CGANNNNNNTGC	4 cut(s)	1745, 1779, 4362, 4396
BciT130I	CCWGG	5 cut(s)	273, 350, 2758, 3357, 4807
BciVI	GTATCC	1 cut(s)	5290
BclI	TGATCA	4 cut(s)	390, 2164, 3901, 4666
BcnI	CCSGG	3 cut(s)	86, 940, 5356
BcuI	ACTAGT	1 cut(s)	1259
BfmI	CTRYAG	4 cut(s)	1035, 1382, 2652, 4083
BfoI	RGCGCY	1 cut(s)	358
BfrI	CTTAAG	1 cut(s)	1499
BfuAI	ACCTGC	3 cut(s)	1576, 3994, 5354
BfuI	GTATCC	1 cut(s)	5290
BglII	AGATCT	3 cut(s)	1593, 3998, 4178
BlnI	CCTAGG	1 cut(s)	4469
BlpI	GCTNAGC	3 cut(s)	2331, 2472, 4140
BmcAI	AGTACT	1 cut(s)	2728
Bme1390I	CCNGG	8 cut(s)	86, 273, 350, 940, 2758, 3357, 4807, 5356
Bme18I	GGWCC	8 cut(s)	88, 208, 601, 1352, 3607, 4710, 5122, 5453
BmeRI	GACNNNNNGTC	1 cut(s)	5459
BmeT110I	CYCGRG	4 cut(s)	2108, 3021, 4602, 5104
BmiI	GGNNCC	9 cut(s)	90, 603, 1100, 1566, 2413, 4442, 4647, 5455, 5487
BmrFI	CCNGG	8 cut(s)	86, 273, 350, 940, 2758, 3357, 4807, 5356
BmrI	ACTGGG	2 cut(s)	3564, 5410
BmtI	GCTAGC	1 cut(s)	3930
BmuI	ACTGGG	2 cut(s)	3564, 5410
BpiI	GAAGAC	3 cut(s)	437, 2581, 3723
BplI	GAGNNNNNCTC	4 cut(s)	1112, 1144, 3594, 3626
BpmI	CTGGAG	2 cut(s)	294, 1910
Bpu10I	CCTNAGC	2 cut(s)	405, 3970
Bpu1102I	GCTNAGC	3 cut(s)	2331, 2472, 4140
Bpu14I	TTCGAA	2 cut(s)	3496, 4382
BpuEI	CTTGAG	5 cut(s)	240, 1917, 3596, 4089, 5142
BpuMI	CCSGG	3 cut(s)	86, 940, 5356
Bsa29I	ATCGAT	1 cut(s)	4969
BsaBI	GATNNNNATC	2 cut(s)	1464, 4971
BsaI	GGTCTC	2 cut(s)	2694, 5436
BsaWI	WCCGGW	1 cut(s)	4707
BsaXI	ACNNNNNCTCC	4 cut(s)	2088, 2118, 3765, 3795
Bsc4I	CCNNNNNNNGG	7 cut(s)	1241, 1583, 2035, 2262, 3773, 4812, 5290
Bse118I	RCCGGY	2 cut(s)	2455, 4707
Bse21I	CCTNAGG	1 cut(s)	1252
Bse3DI	GCAATG	1 cut(s)	4732
Bse8I	GATNNNNATC	2 cut(s)	1464, 4971
BseBI	CCWGG	5 cut(s)	273, 350, 2758, 3357, 4807
BseCI	ATCGAT	1 cut(s)	4969
BseGI	GGATG	9 cut(s)	961, 1138, 1773, 2179, 2296, 2745, 2999, 4915, 5572
BseJI	GATNNNNATC	2 cut(s)	1464, 4971
BseLI	CCNNNNNNNGG	7 cut(s)	1241, 1583, 2035, 2262, 3773, 4812, 5290
BseMI	GCAATG	1 cut(s)	4732
BseRI	GAGGAG	5 cut(s)	2096, 2126, 5001, 5255, 5385
BseSI	GKGCMC	1 cut(s)	3153
BseYI	CCCAGC	3 cut(s)	1759, 4244, 5519
BsgI	GTGCAG	3 cut(s)	1038, 3738, 4053
Bsh1236I	CGCG	4 cut(s)	1630, 3339, 4780, 5208
BshFI	GGCC	7 cut(s)	173, 305, 2085, 2596, 3408, 4441, 4688
BshNI	GGYRCC	2 cut(s)	1098, 1564
BshTI	ACCGGT	1 cut(s)	4707
BshVI	ATCGAT	1 cut(s)	4969
BsiHKAI	GWGCWC	5 cut(s)	123, 289, 1228, 3153, 4105
BsiHKCI	CYCGRG	4 cut(s)	2108, 3021, 4602, 5104
BsiSI	CCGG	5 cut(s)	86, 939, 2456, 4708, 5355
BsiWI	CGTACG	1 cut(s)	27
BslFI	GGGAC	8 cut(s)	2807, 3184, 4216, 4261, 4582, 4823, 5273, 5398
BslI	CCNNNNNNNGG	7 cut(s)	1241, 1583, 2035, 2262, 3773, 4812, 5290
BsmBI	CGTCTC	2 cut(s)	2186, 3281
BsmFI	GGGAC	8 cut(s)	2807, 3184, 4216, 4261, 4582, 4823, 5273, 5398
BsmI	GAATGC	2 cut(s)	273, 2659
BsnI	GGCC	7 cut(s)	173, 305, 2085, 2596, 3408, 4441, 4688
Bso31I	GGTCTC	2 cut(s)	2694, 5436
BsoBI	CYCGRG	4 cut(s)	2108, 3021, 4602, 5104
Bsp119I	TTCGAA	2 cut(s)	3496, 4382
Bsp1286I	GDGCHC	6 cut(s)	123, 289, 1228, 2802, 3153, 4105
Bsp1720I	GCTNAGC	3 cut(s)	2331, 2472, 4140
Bsp19I	CCATGG	4 cut(s)	132, 1297, 2178, 2693
BspANI	GGCC	7 cut(s)	173, 305, 2085, 2596, 3408, 4441, 4688
BspDI	ATCGAT	1 cut(s)	4969
BspFNI	CGCG	4 cut(s)	1630, 3339, 4780, 5208
BspLI	GGNNCC	9 cut(s)	90, 603, 1100, 1566, 2413, 4442, 4647, 5455, 5487
BspMAI	CTGCAG	2 cut(s)	1039, 1386
BspMI	ACCTGC	3 cut(s)	1576, 3994, 5354
BspOI	GCTAGC	1 cut(s)	3930
BspQI	GCTCTTC	2 cut(s)	2567, 3308
BspT104I	TTCGAA	2 cut(s)	3496, 4382
BspT107I	GGYRCC	2 cut(s)	1098, 1564
BspTI	CTTAAG	1 cut(s)	1499
BspTNI	GGTCTC	2 cut(s)	2694, 5436
BsrBI	CCGCTC	3 cut(s)	1030, 1123, 5245
BsrDI	GCAATG	1 cut(s)	4732
BsrFI	RCCGGY	2 cut(s)	2455, 4707
BssAI	RCCGGY	2 cut(s)	2455, 4707
Bst2UI	CCWGG	5 cut(s)	273, 350, 2758, 3357, 4807
Bst4CI	ACNGT	9 cut(s)	1216, 1442, 1804, 2394, 3190, 4116, 4276, 4641, 5126
BstAFI	CTTAAG	1 cut(s)	1499
BstBI	TTCGAA	2 cut(s)	3496, 4382
BstC8I	GCNNGC	9 cut(s)	24, 1067, 1341, 1737, 2185, 2862, 3621, 3928, 4137
BstDSI	CCRYGG	4 cut(s)	132, 1297, 2178, 2693
BstENI	CCTNNNNNAGG	2 cut(s)	3771, 5288
BstF5I	GGATG	9 cut(s)	961, 1138, 1773, 2179, 2296, 2745, 2999, 4915, 5572
BstFNI	CGCG	4 cut(s)	1630, 3339, 4780, 5208
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	4 cut(s)	357, 1426, 1630, 5208
BstNI	CCWGG	5 cut(s)	273, 350, 2758, 3357, 4807
BstNSI	RCATGY	4 cut(s)	2864, 3355, 3914, 5020
BstSCI	CCNGG	8 cut(s)	84, 271, 348, 938, 2756, 3355, 4805, 5354
BstSFI	CTRYAG	4 cut(s)	1035, 1382, 2652, 4083
BstSLI	GKGCMC	1 cut(s)	3153
BstUI	CGCG	4 cut(s)	1630, 3339, 4780, 5208
BstV2I	GAAGAC	3 cut(s)	437, 2581, 3723
BstX2I	RGATCY	9 cut(s)	946, 1459, 1593, 2680, 2716, 3998, 4178, 4645, 4802
BstXI	CCANNNNNNTGG	2 cut(s)	313, 5527
BstYI	RGATCY	9 cut(s)	946, 1459, 1593, 2680, 2716, 3998, 4178, 4645, 4802
Bsu15I	ATCGAT	1 cut(s)	4969
Bsu36I	CCTNAGG	1 cut(s)	1252
BsuI	GTATCC	1 cut(s)	5290
BsuRI	GGCC	7 cut(s)	173, 305, 2085, 2596, 3408, 4441, 4688
BsuTUI	ATCGAT	1 cut(s)	4969
BtgI	CCRYGG	4 cut(s)	132, 1297, 2178, 2693
BtgZI	GCGATG	1 cut(s)	3333
BtsCI	GGATG	9 cut(s)	961, 1138, 1773, 2179, 2296, 2745, 2999, 4915, 5572
BtsI	GCAGTG	2 cut(s)	2194, 2276
BtsIMutI	CAGTG	8 cut(s)	1212, 1447, 2145, 2194, 2276, 3424, 4689, 5541
BveI	ACCTGC	3 cut(s)	1576, 3994, 5354
Cac8I	GCNNGC	9 cut(s)	24, 1067, 1341, 1737, 2185, 2862, 3621, 3928, 4137
CaiI	CAGNNNCTG	4 cut(s)	2645, 3128, 4091, 4664
CfoI	GCGC	4 cut(s)	357, 1426, 1630, 5208
Cfr10I	RCCGGY	2 cut(s)	2455, 4707
ClaI	ATCGAT	1 cut(s)	4969
CseI	GACGC	4 cut(s)	1913, 2203, 4287, 4754
CspAI	ACCGGT	1 cut(s)	4707
DraI	TTTAAA	1 cut(s)	3705
DraIII	CACNNNGTG	1 cut(s)	3761
DriI	GACNNNNNGTC	1 cut(s)	5459
EaeI	YGGCCR	2 cut(s)	303, 3406
Eam1105I	GACNNNNNGTC	1 cut(s)	5459
EciI	GGCGGA	3 cut(s)	4576, 4983, 5341
Ecl136II	GAGCTC	2 cut(s)	121, 4103
Eco24I	GRGCYC	3 cut(s)	123, 2802, 4105
Eco31I	GGTCTC	2 cut(s)	2694, 5436
Eco32I	GATATC	3 cut(s)	238, 3380, 4973
Eco47I	GGWCC	8 cut(s)	88, 208, 601, 1352, 3607, 4710, 5122, 5453
Eco47III	AGCGCT	1 cut(s)	356
Eco53kI	GAGCTC	2 cut(s)	121, 4103
Eco57I	CTGAAG	7 cut(s)	1412, 2667, 3068, 4554, 4596, 4841, 5157
Eco81I	CCTNAGG	1 cut(s)	1252
Eco88I	CYCGRG	4 cut(s)	2108, 3021, 4602, 5104
EcoICRI	GAGCTC	2 cut(s)	121, 4103
EcoNI	CCTNNNNNAGG	2 cut(s)	3771, 5288
EcoO109I	RGGNCCY	3 cut(s)	3607, 4440, 5453
EcoRI	GAATTC	2 cut(s)	2940, 4028
EcoRII	CCWGG	5 cut(s)	271, 348, 2756, 3355, 4805
EcoRV	GATATC	3 cut(s)	238, 3380, 4973
EcoT22I	ATGCAT	2 cut(s)	1870, 4240
EcoT38I	GRGCYC	3 cut(s)	123, 2802, 4105
Esp3I	CGTCTC	2 cut(s)	2186, 3281
FaqI	GGGAC	8 cut(s)	2807, 3184, 4216, 4261, 4582, 4823, 5273, 5398
FauI	CCCGC	1 cut(s)	5238
FbaI	TGATCA	4 cut(s)	390, 2164, 3901, 4666
FblI	GTMKAC	3 cut(s)	1543, 3265, 5128
FokI	GGATG	9 cut(s)	968, 1125, 1780, 2186, 2303, 2752, 2986, 4922, 5579
FriOI	GRGCYC	3 cut(s)	123, 2802, 4105
GlaI	GCGC	4 cut(s)	356, 1425, 1629, 5207
GsaI	CCCAGC	3 cut(s)	1763, 4248, 5523
GsuI	CTGGAG	2 cut(s)	294, 1910
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	7 cut(s)	173, 305, 2085, 2596, 3408, 4441, 4688
HapII	CCGG	5 cut(s)	86, 939, 2456, 4708, 5355
HgaI	GACGC	4 cut(s)	1913, 2203, 4287, 4754
HhaI	GCGC	4 cut(s)	357, 1426, 1630, 5208
Hin6I	GCGC	4 cut(s)	355, 1424, 1628, 5206
HinP1I	GCGC	4 cut(s)	355, 1424, 1628, 5206
HincII	GTYRAC	2 cut(s)	3193, 3516
HindII	GTYRAC	2 cut(s)	3193, 3516
HindIII	AAGCTT	2 cut(s)	1527, 4984
HpaII	CCGG	5 cut(s)	86, 939, 2456, 4708, 5355
Hpy99I	CGWCG	3 cut(s)	1224, 2999, 5538
HpyCH4III	ACNGT	9 cut(s)	1216, 1442, 1804, 2394, 3190, 4116, 4276, 4641, 5126
HpyCH4IV	ACGT	7 cut(s)	30, 1538, 1899, 2708, 2994, 3290, 5173
HpySE526I	ACGT	7 cut(s)	30, 1538, 1899, 2708, 2994, 3290, 5173
HspAI	GCGC	4 cut(s)	355, 1424, 1628, 5206
KpnI	GGTACC	2 cut(s)	1102, 1568
Ksp22I	TGATCA	4 cut(s)	390, 2164, 3901, 4666
LguI	GCTCTTC	2 cut(s)	2567, 3308
MaeII	ACGT	7 cut(s)	30, 1538, 1899, 2708, 2994, 3290, 5173
MbiI	CCGCTC	3 cut(s)	1030, 1123, 5245
MfeI	CAATTG	4 cut(s)	248, 1559, 1815, 4191
MflI	RGATCY	9 cut(s)	946, 1459, 1593, 2680, 2716, 3998, 4178, 4645, 4802
MhlI	GDGCHC	6 cut(s)	123, 289, 1228, 2802, 3153, 4105
MlsI	TGGCCA	2 cut(s)	305, 3408
MluNI	TGGCCA	2 cut(s)	305, 3408
MlyI	GAGTC	6 cut(s)	1461, 1876, 2267, 2651, 3445, 3829
MmeI	TCCRAC	8 cut(s)	1564, 1689, 1745, 2694, 3763, 3846, 4006, 4623
Mox20I	TGGCCA	2 cut(s)	305, 3408
Mph1103I	ATGCAT	2 cut(s)	1870, 4240
MroXI	GAANNNNTTC	5 cut(s)	1152, 1329, 2100, 2940, 4028
MscI	TGGCCA	2 cut(s)	305, 3408
MslI	CAYNNNNRTG	6 cut(s)	873, 2378, 3146, 3201, 4674, 4962
Msp20I	TGGCCA	2 cut(s)	305, 3408
MspA1I	CMGCKG	9 cut(s)	1580, 1759, 1888, 3974, 4147, 4244, 4370, 4946, 5467
MspCI	CTTAAG	1 cut(s)	1499
MspI	CCGG	5 cut(s)	86, 939, 2456, 4708, 5355
MspR9I	CCNGG	8 cut(s)	86, 273, 350, 940, 2758, 3357, 4807, 5356
MunI	CAATTG	4 cut(s)	248, 1559, 1815, 4191
Mva1269I	GAATGC	2 cut(s)	273, 2659
MvaI	CCWGG	5 cut(s)	273, 350, 2758, 3357, 4807
MvnI	CGCG	4 cut(s)	1630, 3339, 4780, 5208
NciI	CCSGG	3 cut(s)	86, 940, 5356
NcoI	CCATGG	4 cut(s)	132, 1297, 2178, 2693
NheI	GCTAGC	1 cut(s)	3926
NlaIV	GGNNCC	9 cut(s)	90, 603, 1100, 1566, 2413, 4442, 4647, 5455, 5487
NmuCI	GTSAC	9 cut(s)	31, 976, 1943, 2009, 2449, 2769, 3593, 4214, 5537
NsiI	ATGCAT	2 cut(s)	1870, 4240
NspI	RCATGY	4 cut(s)	2864, 3355, 3914, 5020
NspV	TTCGAA	2 cut(s)	3496, 4382
PaeI	GCATGC	1 cut(s)	2864
PaeR7I	CTCGAG	2 cut(s)	2108, 4602
PaqCI	CACCTGC	1 cut(s)	5354
PciSI	GCTCTTC	2 cut(s)	2567, 3308
PcsI	WCGNNNNNNNCGW	1 cut(s)	3000
PctI	GAATGC	2 cut(s)	273, 2659
PdmI	GAANNNNTTC	5 cut(s)	1152, 1329, 2100, 2940, 4028
Pfl23II	CGTACG	1 cut(s)	27
PflMI	CCANNNNNTGG	2 cut(s)	1241, 1583
PfoI	TCCNGGA	3 cut(s)	84, 348, 2756
PinAI	ACCGGT	1 cut(s)	4707
PleI	GAGTC	6 cut(s)	1460, 1876, 2267, 2650, 3444, 3829
PpsI	GAGTC	6 cut(s)	1460, 1876, 2267, 2650, 3444, 3829
PpuMI	RGGWCCY	2 cut(s)	3607, 5453
PshBI	ATTAAT	2 cut(s)	581, 3561
PsiI	TTATAA	2 cut(s)	572, 777
Psp124BI	GAGCTC	2 cut(s)	123, 4105
Psp5II	RGGWCCY	2 cut(s)	3607, 5453
Psp6I	CCWGG	5 cut(s)	271, 348, 2756, 3355, 4805
PspFI	CCCAGC	3 cut(s)	1759, 4244, 5519
PspGI	CCWGG	5 cut(s)	271, 348, 2756, 3355, 4805
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	9 cut(s)	90, 603, 1100, 1566, 2413, 4442, 4647, 5455, 5487
PspPPI	RGGWCCY	2 cut(s)	3607, 5453
PspXI	VCTCGAGB	2 cut(s)	2108, 4602
PstI	CTGCAG	2 cut(s)	1039, 1386
PstNI	CAGNNNCTG	4 cut(s)	2645, 3128, 4091, 4664
PsuI	RGATCY	9 cut(s)	946, 1459, 1593, 2680, 2716, 3998, 4178, 4645, 4802
PvuII	CAGCTG	6 cut(s)	1580, 1759, 1888, 3974, 4244, 4370
RseI	CAYNNNNRTG	6 cut(s)	873, 2378, 3146, 3201, 4674, 4962
SacI	GAGCTC	2 cut(s)	123, 4105
SapI	GCTCTTC	2 cut(s)	2567, 3308
ScaI	AGTACT	1 cut(s)	2728
SchI	GAGTC	6 cut(s)	1461, 1876, 2267, 2651, 3445, 3829
ScrFI	CCNGG	8 cut(s)	86, 273, 350, 940, 2758, 3357, 4807, 5356
SduI	GDGCHC	6 cut(s)	123, 289, 1228, 2802, 3153, 4105
SfcI	CTRYAG	4 cut(s)	1035, 1382, 2652, 4083
Sfr274I	CTCGAG	2 cut(s)	2108, 4602
SfuI	TTCGAA	2 cut(s)	3496, 4382
SinI	GGWCC	8 cut(s)	88, 208, 601, 1352, 3607, 4710, 5122, 5453
SlaI	CTCGAG	2 cut(s)	2108, 4602
SmiMI	CAYNNNNRTG	6 cut(s)	873, 2378, 3146, 3201, 4674, 4962
SmlI	CTYRAG	8 cut(s)	255, 1499, 1932, 2108, 3611, 4104, 4602, 5157
SmoI	CTYRAG	8 cut(s)	255, 1499, 1932, 2108, 3611, 4104, 4602, 5157
SpeI	ACTAGT	1 cut(s)	1259
SphI	GCATGC	1 cut(s)	2864
SspI	AATATT	2 cut(s)	1239, 2608
SstI	GAGCTC	2 cut(s)	123, 4105
StyD4I	CCNGG	8 cut(s)	84, 271, 348, 938, 2756, 3355, 4805, 5354
TaaI	ACNGT	9 cut(s)	1216, 1442, 1804, 2394, 3190, 4116, 4276, 4641, 5126
TaiI	ACGT	7 cut(s)	33, 1541, 1902, 2711, 2997, 3293, 5176
TaqII	GACCGA	2 cut(s)	4629, 5460
TatI	WGTACW	5 cut(s)	1804, 2726, 3107, 3245, 3483
TauI	GCSGC	5 cut(s)	154, 173, 1126, 4147, 5315
TscAI	CASTG	8 cut(s)	1219, 1447, 2152, 2194, 2283, 3431, 4696, 5548
TseFI	GTSAC	9 cut(s)	31, 976, 1943, 2009, 2449, 2769, 3593, 4214, 5537
Tsp45I	GTSAC	9 cut(s)	31, 976, 1943, 2009, 2449, 2769, 3593, 4214, 5537
TspGWI	ACGGA	7 cut(s)	324, 1075, 2935, 2966, 2992, 3705, 4218
TspRI	CASTG	8 cut(s)	1219, 1447, 2152, 2194, 2283, 3431, 4696, 5548
Van91I	CCANNNNNTGG	2 cut(s)	1241, 1583
Vha464I	CTTAAG	1 cut(s)	1499
VneI	GTGCAC	1 cut(s)	3149
VpaK11BI	GGWCC	8 cut(s)	88, 208, 601, 1352, 3607, 4710, 5122, 5453
VspI	ATTAAT	2 cut(s)	581, 3561
XagI	CCTNNNNNAGG	2 cut(s)	3771, 5288
XbaI	TCTAGA	1 cut(s)	2599
XceI	RCATGY	4 cut(s)	2864, 3355, 3914, 5020
XcmI	CCANNNNNNNNNTGG	3 cut(s)	313, 4241, 5423
XhoI	CTCGAG	2 cut(s)	2108, 4602
XmaJI	CCTAGG	1 cut(s)	4469
XmiI	GTMKAC	3 cut(s)	1543, 3265, 5128
XmnI	GAANNNNTTC	5 cut(s)	1152, 1329, 2100, 2940, 4028
ZrmI	AGTACT	1 cut(s)	2728
Zsp2I	ATGCAT	2 cut(s)	1870, 4240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.