Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0003911

Physical Location & Seq

Genomic Coordinates Reverse (-)

217199 .. 233459

Gene Structure 16261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5583 bp

atgtctctcccgcccgtagagcgctcacacattaaggaggaccacctccgtgaatggaagagcggaaaccctagcttcaagctcccggagcccgttccgatgcttcggttcctctacgagctctgctccaccatggttcgtggagaattgccgtttcagaagtgtagagccgctttggattcggtggagttttccgaaaaggtttccgagcaagagctggcttcaagcttggcagatattgtcactcaaatgtctcaagatcttaccatgcccggagagcatcgagctcgtctcacaaaactggccaaatggttggtggaatcttctttagttccattaaggctttttcaggagcgctgtgaggaagaatttttgtgggaggctgaaatgatcaagataaaggctcaagaactgaagagtaaagaggttagagtaaacacccgtcttctatatcagcaaacaaagtttaatcttcttcgagaagagagtgagggatatgccaagctggtgacacttctttgccaaaattcagaaaattcatcacacaatgcaggagcaacaataggcattataaagtcattgattggacattttgatctggacccaaatcatgtttttgatatcgttttggagtgtttcgaacttctgccagacaacaatgtctttttggagttgataccgatttttccaaagtctcatgcttcacaaatacttggttttaaatttcaacattaccagcgtttggaagtaaatgatcctgtaccatttggactttataagcttacggctttactggtgaaggagaattttattgatcttgatagcatatgtgctcatttacttccgaaggacgatgaggcatttgagcactacagctctttctcctccaagcaacttgatgaggctaataaaattggtaaaattaatcttgctgctactgggaaggatctaatggaagatgagaaacaaggagacgtgacaatagatctctttgcatctttagacatggattcagaggcagtaggagaaagatctgcagagtttgaaaataatcaaactttgggcttgcttactggttttctttctgtagatgactggtatcatgcacacatactatttgaccgtctgtcacctctaaatcctgttgaacatatccaaatctgtaatagcttgtttagattgattgaaaagtcaatctcttctgcatatgacatggttcgtcaagcacgtctcaataacttggggtcatcctcaggaaccagtgttggtgtgatgaccacagaaaactcatcagctagtggttcttttatagaacttaaaaaagaactttttcagatgcttgctattgttgggccttatctttatcgtgatactttgctgctacagaaggtttgcagagtattaagaggttattacttgtctgctccggatcttggaaggactggtgaagttgctgtttctgccagtaatcctcgtttgcctctaaaggaagctaggtccccccgtcaggttgcaatgtcaagggtagaggaagccttccggacatgtctacttccatctctacagttagtacctgcaaatccagctgttggaatggagatttgggaagtgatgagtctacttccttatgaggtgaggtatcgtttatatggtgaatgggagaaagaagatgaacggattcctatggttttagctgcaaggcaaacagccaagttggacactagaagaattttgaagcggcttgcaaaagaaaatttaaagcagcagggtaggatggttgcaaaattagctcatgcaaatccaatgactgtacttcgaacaattgttcatcagatcgaggcgtacaaagatatgattgctcctgttgtagatgcatttaagtatttgactcagctggagtatgatgtcctggaatatgttgtgattgaacgtctggcgcaaggagggcgtgataagctgaaagaggatgggcttaacttgtcagactggcttcaatctttggcttcattttggggtcacttgtgtaaaaaatatccatctatggaattgagaggccttttccagtatcttgtaaatcagttgaaaaagggccaaggaattgagcttgttgttcttcaggagcttattcagcaaatggcaaatgtccatcacacagaggaccttactgaagatcagctggatgccatggcagggggtgagactctccgtcatcacgccactggttttggtgttactcgacataacaagcaactactcaagtccacaaacaggctaagggactcactgcttccaaaggatgaaaccaagctggcaatccctcttttgttacatcttgctcagcatcgttctttggtcataatagatgcagatgcgccttatattaagatggttagcgagcagtttgatagatgtcacggagcactccttcagtatgtggaatttctttgcagtgccatgccatcggcatcagcttatgctcagctaattccttcacttgatgatcttgtccataaataccaccttgatcctgaggttgctttcttaatttatcgcccagtaatgaggctcttcaagagccccgcgagttctgatgtcttctggcctctagacaataatgatgctcaaagtatcacatctgcaaattcagagtctgatgctgtacagaactctggcaacgtggttctggatctcgggtctacatggaaccctataacgtggttggatcttcttcatactgctaaagctatgttgcctgcaagagcctggaatagtttgtcccctgatctttatgctacattttgggggctcacactctatgatctttatgtccctagaaattgttatgaatctgaaattgcgaaacagcaggcttctcttaaagttctggaagagcagcctgataattcaatttctgcaataaccaaaaggaagaaagagaaggaaagaattcaagataccatagatcgcctgactagtgaactccgtaaacatgaggaacatgttgcatctgttcgtaaacgcttatcgcgtgagaaggacaaatggttgagttcttgtcttgatacgttaaagatcaacatggaattccttcagcgttgtatatttcctcgctgtactttcagcatgccagatgctgtctattgtgccatgtttgtgcacactcttcattccctggggacaccattttttaacacagtcaaccacatggatgttcttatatgtagaaccttacagcctatgatatgctgctgcactgaatctgaagttggtagactggggaagtttctctgtgagaccttgaaaattgcttactattggaagagtgatgaatctatttatgagcgcgagtgcggaaacatgccaggatttgctgtctactataggtttccagatagccagcgggtccgatatggccagtttgtgaaggtgcactggaaatggagtcaaaggatcacgagattattgggtcagtgtctggaatctccggagtacatggaaattcgaaacgctctcataatcttatcaagaatttctagtgttttcccggttactaaaaagagtgggatgaacctcgaaagacgggtgtccaagatcaaaggtgatgggagagaggacctcaaggtgttggcaacaagtgttggtgcttctttggctgctagaaagccttcattggtttcggatgaagaattttgtatgggatacgttgaattaaagtcgacagcatcttcaaagccttcagccagtaattcaggagctatacagagtggtcctgccgttaataattctcaaaccgaacctgttggcggaagagcaggaaaccttgtctcccaacactcagaattaataaactcagccagagaccacgtgtcaaaaaccaaacctgcagatgggaggttggaaagagcagaaagtatctcaactgcaaaatctgaccaagggcatctaaaactgaaaggtgcctcattggtgaatggctcagatgctcaggcatctgtgccatcagctactttacaatctggaacatcaaggcctatcgaaaatcaagtacaggtgaacgaaatctcaaatcgaacgccagatgaaaatatgggaaaacttgctgcaaagaacacttcagaatctgagttgagggcccaagcaaaacggtctgttcctgctgtggctaagccattgaaacaagatcttgcgaaggatgaaagtagatctggaaaagcagctggagctactaatgcttcttccatcaccgcaaatggtagcacggtatcatcctcgggcaaaggttcagcttcgttaggtattgaatcaaaagtggaggctggatctgcaaagttttccaatacaaggatcccttcttcaaaggaagagggtgctgaggtttctgatgcagcaaggcccccttcttctcgatttgttcattctcctagacatgatagttctgctacactctcaaagtccagtgataaacttcaaaaaagaaccagccctgcagaagaaacagatagacaaagtaaacgccggaaaggggaggctgaaatgaaagattttgagggtgaagctcgcttgtctgaccgagagaggtctgttgatgctagactgttggatcttgacaaatcaggaagcgatgatagaagtgtatataaggccactgaaaaggcttcagatcggtctaaagataaaggaagtgaaagacatgataaggatcacagggaaagattggaccgtcctgataagtcacgcggagatgatttagttgagagatccagagataggtcaatggagagacatggaagggatcattcagctgagaaattgcaagagaggggtacagataggagttttgatagactgcctgacaaatctaaggatgagaaaggtaaagggcgttacagtgatatttctgctgaaaaatctcatgttgatgatcgatatcacgggcaaagcttacctccaccaccgcccttacctcctcacattgttcctcaatctgttagttctggaagaagagacgaagattcagatagaaggactgcaactacaaggcatactcaaaggctttctccgagacatgatgagaaggaacgtagacgatctgaagaaaattcctcaatttctcaagatgattcaaagcgtagaagagaagatgattttcgagagagaaagcgtgatgatcgtgaggggacctcagtaaaggtggaagagagggacagggagagggaaagggagagggagaaagaaagggagaaagccaacctcttgaaggaggattcagactcaattgcagcttctaagaggcggaaacttaaacgagaacatctggcttctggggaagctggtgagtactcaccagttcaccctccccctcccctctctattaacttgtcccagtcatacgatggaagagataggggagaacggaaaggacccattgtcacgcgcacaggttacatggaggaatcaagtctgaggattcatggtaaagaagtatccagcaagatgacccgccgtgatacagacccgatgtacgactgggacgacgataaaaggcaaagaggtgaacagaaacgaaggcatcgcaagaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

1860

Amino Acids

210.36

Weight (kDa)

7.58

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706 AT1G24706
fragaria_vesca	FvH4_4g33200 FvH4_4g33200 FvH4_4g33200
malus_domestica	MD09G1258800.v1.1
prunus_persica	Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1 Prupe.3G150800_v2.0.a1
pyrus_communis	pycom09g17360
rosa_chinensis	RchiOBHm_Chr4g0442311
rosa_laevigata	RLG00000006018
rosa_multiflora	Rmu_sc0000124.1_g000055
rosa_roxburghii	Rroxscaffold_5G00383170
rosa_rugosa	Rorug04G0340300 Rorug04G0340400
rosa_samantha	Rh4AG391900 Rh4BG405400 Rh4CG420600 Rh4DG398700
rosa_wichuraiana	Rw4G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	572, 777
AasI	GACNNNNNNGTC	1 cut(s)	659
Acc36I	ACCTGC	2 cut(s)	1582, 3889
AccB1I	GGYRCC	1 cut(s)	3956
AccB7I	CCANNNNNTGG	2 cut(s)	742, 1589
AccBSI	CCGCTC	1 cut(s)	63
AccI	GTMKAC	7 cut(s)	1549, 1618, 2696, 3271, 3375, 3716, 5083
AccII	CGCG	5 cut(s)	2582, 3028, 3345, 4737, 5434
AccIII	TCCGGA	3 cut(s)	1426, 1539, 3484
AcoI	YGGCCR	2 cut(s)	303, 3412
AcvI	CACGTG	1 cut(s)	3865
AfeI	AGCGCT	2 cut(s)	23, 356
AflIII	ACRYGT	3 cut(s)	1544, 2998, 3864
AhdI	GACNNNNNGTC	4 cut(s)	1126, 2205, 3865, 5426
AhlI	ACTAGT	1 cut(s)	2972
AjiI	CACGTC	2 cut(s)	976, 1229
AjnI	CCWGG	4 cut(s)	1908, 2762, 3171, 3361
AjuI	GAANNNNNNNTTGG	4 cut(s)	1585, 1617, 3249, 3281
AleI	CACNNNNGTG	1 cut(s)	48
Alw21I	GWGCWC	7 cut(s)	123, 289, 835, 870, 2422, 3159, 3432
Alw44I	GTGCAC	2 cut(s)	3155, 3428
AlwNI	CAGNNNCTG	4 cut(s)	2651, 3134, 3475, 4121
Ama87I	CYCGRG	2 cut(s)	2690, 4270
Aor13HI	TCCGGA	3 cut(s)	1426, 1539, 3484
Aor51HI	AGCGCT	2 cut(s)	23, 356
ApaI	GGGCCC	1 cut(s)	4135
ApaLI	GTGCAC	2 cut(s)	3155, 3428
ArsI	GACNNNNNNTTYG	2 cut(s)	2633, 2665
AseI	ATTAAT	2 cut(s)	924, 3842
Asp700I	GAANNNNTTC	5 cut(s)	1329, 1677, 2946, 3087, 3664
AspLEI	GCGC	6 cut(s)	24, 357, 1939, 2374, 3345, 5436
AsuC2I	CCSGG	3 cut(s)	86, 273, 3545
AsuII	TTCGAA	3 cut(s)	639, 1816, 3502
AvaI	CYCGRG	2 cut(s)	2690, 4270
AxyI	CCTNAGG	2 cut(s)	1252, 2529
BaeGI	GKGCMC	3 cut(s)	3159, 3432, 4135
BalI	TGGCCA	2 cut(s)	305, 3414
BamHI	GGATCC	1 cut(s)	4344
BanI	GGYRCC	1 cut(s)	3956
BanII	GRGCYC	6 cut(s)	93, 123, 289, 2579, 2808, 4135
BauI	CACGAG	1 cut(s)	3454
BbrPI	CACGTG	1 cut(s)	3865
BbsI	GAAGAC	2 cut(s)	437, 2587
Bbv12I	GWGCWC	7 cut(s)	123, 289, 835, 870, 2422, 3159, 3432
BbvCI	CCTCAGC	1 cut(s)	4371
BceAI	ACGGC	4 cut(s)	136, 801, 3758, 5487
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	4 cut(s)	1910, 2764, 3173, 3363
BciVI	GTATCC	2 cut(s)	3692, 5494
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	3 cut(s)	86, 273, 3545
BcuI	ACTAGT	1 cut(s)	2972
BfmI	CTRYAG	8 cut(s)	871, 1035, 1086, 1382, 1562, 3379, 3882, 4485
BfoI	RGCGCY	2 cut(s)	25, 358
BfuAI	ACCTGC	2 cut(s)	1582, 3889
BfuI	GTATCC	2 cut(s)	3692, 5494
BglII	AGATCT	5 cut(s)	259, 985, 1031, 4180, 4202
BlpI	GCTNAGC	3 cut(s)	2337, 2478, 4164
BmcAI	AGTACT	1 cut(s)	5339
Bme1390I	CCNGG	7 cut(s)	86, 273, 1910, 2764, 3173, 3363, 3545
BmeRI	GACNNNNNGTC	4 cut(s)	1126, 2205, 3865, 5426
BmeT110I	CYCGRG	2 cut(s)	2690, 4270
BmgBI	CACGTC	2 cut(s)	976, 1229
BmrFI	CCNGG	7 cut(s)	86, 273, 1910, 2764, 3173, 3363, 3545
BmrI	ACTGGG	5 cut(s)	948, 2549, 3284, 5377, 5536
BmuI	ACTGGG	5 cut(s)	948, 2549, 3284, 5377, 5536
BoxI	GACNNNNGTC	1 cut(s)	3583
BpiI	GAAGAC	2 cut(s)	437, 2587
BplI	GAGNNNNNCTC	8 cut(s)	110, 142, 276, 308, 3600, 3632, 5165, 5197
BpmI	CTGGAG	2 cut(s)	1916, 4239
Bpu10I	CCTNAGC	3 cut(s)	2273, 3984, 4371
Bpu1102I	GCTNAGC	3 cut(s)	2337, 2478, 4164
Bpu14I	TTCGAA	3 cut(s)	639, 1816, 3502
BpuEI	CTTGAG	5 cut(s)	240, 390, 2240, 3602, 5097
BpuMI	CCSGG	3 cut(s)	86, 273, 3545
Bsa29I	ATCGAT	1 cut(s)	4924
BsaAI	YACGTR	1 cut(s)	3865
BsaBI	GATNNNNATC	2 cut(s)	4698, 4926
BsaI	GGTCTC	2 cut(s)	3287, 3852
BsaJI	CCNNGG	7 cut(s)	132, 2092, 2184, 3171, 3172, 3934, 4269
BsaWI	WCCGGW	3 cut(s)	1426, 1539, 3484
BsaXI	ACNNNNNCTCC	2 cut(s)	3809, 3839
Bse21I	CCTNAGG	2 cut(s)	1252, 2529
Bse3DI	GCAATG	1 cut(s)	1521
Bse8I	GATNNNNATC	2 cut(s)	4698, 4926
BseAI	TCCGGA	3 cut(s)	1426, 1539, 3484
BseBI	CCWGG	4 cut(s)	1910, 2764, 3173, 3363
BseCI	ATCGAT	1 cut(s)	4924
BseDI	CCNNGG	7 cut(s)	132, 2092, 2184, 3171, 3172, 3934, 4269
BseJI	GATNNNNATC	2 cut(s)	4698, 4926
BseMI	GCAATG	1 cut(s)	1521
BseRI	GAGGAG	2 cut(s)	874, 4956
BseSI	GKGCMC	3 cut(s)	3159, 3432, 4135
BsgI	GTGCAG	1 cut(s)	3235
Bsh1236I	CGCG	5 cut(s)	2582, 3028, 3345, 4737, 5434
BshNI	GGYRCC	1 cut(s)	3956
BshVI	ATCGAT	1 cut(s)	4924
BsiHKAI	GWGCWC	7 cut(s)	123, 289, 835, 870, 2422, 3159, 3432
BsiHKCI	CYCGRG	2 cut(s)	2690, 4270
BsiSI	CCGG	7 cut(s)	86, 273, 1427, 1540, 3485, 3545, 4516
BslFI	GGGAC	9 cut(s)	1483, 2291, 2761, 2813, 3190, 5191, 5216, 5365, 5543
BsmBI	CGTCTC	4 cut(s)	296, 966, 1235, 4998
BsmFI	GGGAC	9 cut(s)	1483, 2291, 2761, 2813, 3190, 5191, 5216, 5365, 5543
Bso31I	GGTCTC	2 cut(s)	3287, 3852
BsoBI	CYCGRG	2 cut(s)	2690, 4270
Bsp119I	TTCGAA	3 cut(s)	639, 1816, 3502
Bsp120I	GGGCCC	1 cut(s)	4131
Bsp13I	TCCGGA	3 cut(s)	1426, 1539, 3484
Bsp1407I	TGTACA	1 cut(s)	2659
Bsp1720I	GCTNAGC	3 cut(s)	2337, 2478, 4164
Bsp19I	CCATGG	2 cut(s)	132, 2184
BspDI	ATCGAT	1 cut(s)	4924
BspEI	TCCGGA	3 cut(s)	1426, 1539, 3484
BspFNI	CGCG	5 cut(s)	2582, 3028, 3345, 4737, 5434
BspMAI	CTGCAG	3 cut(s)	1039, 3886, 4489
BspMI	ACCTGC	2 cut(s)	1582, 3889
BspQI	GCTCTTC	4 cut(s)	53, 2573, 2883, 3802
BspT104I	TTCGAA	3 cut(s)	639, 1816, 3502
BspT107I	GGYRCC	1 cut(s)	3956
BspTNI	GGTCTC	2 cut(s)	3287, 3852
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	1521
BsrGI	TGTACA	1 cut(s)	2659
BssECI	CCNNGG	7 cut(s)	132, 2092, 2184, 3171, 3172, 3934, 4269
BssSI	CACGAG	1 cut(s)	3454
BssT1I	CCWWGG	4 cut(s)	132, 2092, 2184, 3934
Bst2BI	CACGAG	1 cut(s)	3454
Bst2UI	CCWGG	4 cut(s)	1910, 2764, 3173, 3363
Bst4CI	ACNGT	9 cut(s)	1124, 1566, 1810, 3196, 4146, 4261, 4596, 4721, 4889
BstAUI	TGTACA	1 cut(s)	2659
BstBAI	YACGTR	1 cut(s)	3865
BstBI	TTCGAA	3 cut(s)	639, 1816, 3502
BstDSI	CCRYGG	2 cut(s)	132, 2184
BstENI	CCTNNNNNAGG	1 cut(s)	5255
BstFNI	CGCG	5 cut(s)	2582, 3028, 3345, 4737, 5434
BstH2I	RGCGCY	2 cut(s)	25, 358
BstHHI	GCGC	6 cut(s)	24, 357, 1939, 2374, 3345, 5436
BstNI	CCWGG	4 cut(s)	1910, 2764, 3173, 3363
BstNSI	RCATGY	4 cut(s)	1548, 3002, 3127, 3361
BstPAI	GACNNNNGTC	1 cut(s)	3583
BstSCI	CCNGG	7 cut(s)	84, 271, 1908, 2762, 3171, 3361, 3543
BstSFI	CTRYAG	8 cut(s)	871, 1035, 1086, 1382, 1562, 3379, 3882, 4485
BstSLI	GKGCMC	3 cut(s)	3159, 3432, 4135
BstUI	CGCG	5 cut(s)	2582, 3028, 3345, 4737, 5434
BstV2I	GAAGAC	2 cut(s)	437, 2587
BstXI	CCANNNNNNTGG	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	4924
Bsu36I	CCTNAGG	2 cut(s)	1252, 2529
BsuI	GTATCC	2 cut(s)	3692, 5494
BsuTUI	ATCGAT	1 cut(s)	4924
BtgI	CCRYGG	2 cut(s)	132, 2184
BtgZI	GCGATG	2 cut(s)	4635, 5555
BtrI	CACGTC	2 cut(s)	976, 1229
BtsI	GCAGTG	2 cut(s)	2282, 2455
BveI	ACCTGC	2 cut(s)	1582, 3889
CaiI	CAGNNNCTG	4 cut(s)	2651, 3134, 3475, 4121
CfoI	GCGC	6 cut(s)	24, 357, 1939, 2374, 3345, 5436
ClaI	ATCGAT	1 cut(s)	4924
CspCI	CAANNNNNGTGG	2 cut(s)	2206, 2241
DraI	TTTAAA	2 cut(s)	721, 1758
DrdI	GACNNNNNNGTC	1 cut(s)	659
DriI	GACNNNNNGTC	4 cut(s)	1126, 2205, 3865, 5426
DseDI	GACNNNNNNGTC	1 cut(s)	659
EaeI	YGGCCR	2 cut(s)	303, 3412
Eam1105I	GACNNNNNGTC	4 cut(s)	1126, 2205, 3865, 5426
EciI	GGCGGA	2 cut(s)	3819, 5308
Ecl136II	GAGCTC	2 cut(s)	121, 287
Eco130I	CCWWGG	4 cut(s)	132, 2092, 2184, 3934
Eco147I	AGGCCT	2 cut(s)	2055, 4030
Eco24I	GRGCYC	6 cut(s)	93, 123, 289, 2579, 2808, 4135
Eco31I	GGTCTC	2 cut(s)	3287, 3852
Eco32I	GATATC	2 cut(s)	622, 4928
Eco47III	AGCGCT	2 cut(s)	23, 356
Eco53kI	GAGCTC	2 cut(s)	121, 287
Eco72I	CACGTG	1 cut(s)	3865
Eco81I	CCTNAGG	2 cut(s)	1252, 2529
Eco88I	CYCGRG	2 cut(s)	2690, 4270
EcoICRI	GAGCTC	2 cut(s)	121, 287
EcoNI	CCTNNNNNAGG	1 cut(s)	5255
EcoO109I	RGGNCCY	7 cut(s)	1497, 2158, 3613, 4131, 4392, 5178, 5420
EcoRI	GAATTC	2 cut(s)	2946, 3083
EcoRII	CCWGG	4 cut(s)	1908, 2762, 3171, 3361
EcoRV	GATATC	2 cut(s)	622, 4928
EcoT14I	CCWWGG	4 cut(s)	132, 2092, 2184, 3934
EcoT22I	ATGCAT	1 cut(s)	1876
EcoT38I	GRGCYC	6 cut(s)	93, 123, 289, 2579, 2808, 4135
ErhI	CCWWGG	4 cut(s)	132, 2092, 2184, 3934
Esp3I	CGTCTC	4 cut(s)	296, 966, 1235, 4998
FalI	AAGNNNNNCTT	4 cut(s)	4333, 4365, 4381, 4413
FaqI	GGGAC	9 cut(s)	1483, 2291, 2761, 2813, 3190, 5191, 5216, 5365, 5543
FauI	CCCGC	4 cut(s)	18, 2587, 3393, 5507
FauNDI	CATATG	2 cut(s)	827, 1207
FbaI	TGATCA	1 cut(s)	390
FblI	GTMKAC	7 cut(s)	1549, 1618, 2696, 3271, 3375, 3716, 5083
FriOI	GRGCYC	6 cut(s)	93, 123, 289, 2579, 2808, 4135
GlaI	GCGC	6 cut(s)	23, 356, 1938, 2373, 3344, 5435
GsuI	CTGGAG	2 cut(s)	1916, 4239
HaeII	RGCGCY	2 cut(s)	25, 358
HapII	CCGG	7 cut(s)	86, 273, 1427, 1540, 3485, 3545, 4516
HhaI	GCGC	6 cut(s)	24, 357, 1939, 2374, 3345, 5436
Hin6I	GCGC	6 cut(s)	22, 355, 1937, 2372, 3343, 5434
HinP1I	GCGC	6 cut(s)	22, 355, 1937, 2372, 3343, 5434
HincII	GTYRAC	2 cut(s)	3199, 3717
HindII	GTYRAC	2 cut(s)	3199, 3717
HindIII	AAGCTT	3 cut(s)	226, 779, 4939
HpaII	CCGG	7 cut(s)	86, 273, 1427, 1540, 3485, 3545, 4516
Hpy99I	CGWCG	1 cut(s)	5537
HpyCH4III	ACNGT	9 cut(s)	1124, 1566, 1810, 3196, 4146, 4261, 4596, 4721, 4889
HpyCH4IV	ACGT	9 cut(s)	975, 1228, 1930, 2676, 2714, 3065, 3702, 3864, 5080
HpySE526I	ACGT	9 cut(s)	975, 1228, 1930, 2676, 2714, 3065, 3702, 3864, 5080
HspAI	GCGC	6 cut(s)	22, 355, 1937, 2372, 3343, 5434
Kpn2I	TCCGGA	3 cut(s)	1426, 1539, 3484
Ksp22I	TGATCA	1 cut(s)	390
LguI	GCTCTTC	4 cut(s)	53, 2573, 2883, 3802
MaeII	ACGT	9 cut(s)	975, 1228, 1930, 2676, 2714, 3065, 3702, 3864, 5080
MbiI	CCGCTC	1 cut(s)	63
MfeI	CAATTG	2 cut(s)	1821, 5274
MlsI	TGGCCA	2 cut(s)	305, 3414
MluNI	TGGCCA	2 cut(s)	305, 3414
MlyI	GAGTC	7 cut(s)	1624, 1882, 2194, 2273, 2657, 3451, 5264
MmeI	TCCRAC	5 cut(s)	1570, 1695, 2700, 3876, 4578
Mox20I	TGGCCA	2 cut(s)	305, 3414
Mph1103I	ATGCAT	1 cut(s)	1876
MroI	TCCGGA	3 cut(s)	1426, 1539, 3484
MroXI	GAANNNNTTC	5 cut(s)	1329, 1677, 2946, 3087, 3664
MscI	TGGCCA	2 cut(s)	305, 3414
MslI	CAYNNNNRTG	5 cut(s)	48, 248, 3152, 3207, 4917
Msp20I	TGGCCA	2 cut(s)	305, 3414
MspA1I	CMGCKG	6 cut(s)	1586, 1894, 2176, 3400, 4217, 4802
MspI	CCGG	7 cut(s)	86, 273, 1427, 1540, 3485, 3545, 4516
MspR9I	CCNGG	7 cut(s)	86, 273, 1910, 2764, 3173, 3363, 3545
MunI	CAATTG	2 cut(s)	1821, 5274
MvaI	CCWGG	4 cut(s)	1910, 2764, 3173, 3363
MvnI	CGCG	5 cut(s)	2582, 3028, 3345, 4737, 5434
NciI	CCSGG	3 cut(s)	86, 273, 3545
NcoI	CCATGG	2 cut(s)	132, 2184
NdeI	CATATG	2 cut(s)	827, 1207
NmuCI	GTSAC	8 cut(s)	241, 508, 976, 1128, 2015, 2411, 4731, 5428
NsiI	ATGCAT	1 cut(s)	1876
NspI	RCATGY	4 cut(s)	1548, 3002, 3127, 3361
NspV	TTCGAA	3 cut(s)	639, 1816, 3502
OliI	CACNNNNGTG	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	3127
PasI	CCCWGGG	1 cut(s)	3172
PceI	AGGCCT	2 cut(s)	2055, 4030
PciI	ACATGT	2 cut(s)	1544, 2998
PciSI	GCTCTTC	4 cut(s)	53, 2573, 2883, 3802
PcsI	WCGNNNNNNNCGW	3 cut(s)	1225, 3025, 5529
PdmI	GAANNNNTTC	5 cut(s)	1329, 1677, 2946, 3087, 3664
PflMI	CCANNNNNTGG	2 cut(s)	742, 1589
PfoI	TCCNGGA	2 cut(s)	84, 1908
PleI	GAGTC	7 cut(s)	1623, 1882, 2194, 2273, 2656, 3450, 5264
PmaCI	CACGTG	1 cut(s)	3865
PmlI	CACGTG	1 cut(s)	3865
PpsI	GAGTC	7 cut(s)	1623, 1882, 2194, 2273, 2656, 3450, 5264
Ppu21I	YACGTR	1 cut(s)	3865
PpuMI	RGGWCCY	5 cut(s)	1497, 2158, 3613, 5178, 5420
PscI	ACATGT	2 cut(s)	1544, 2998
PshAI	GACNNNNGTC	1 cut(s)	3583
PshBI	ATTAAT	2 cut(s)	924, 3842
PsiI	TTATAA	2 cut(s)	572, 777
Psp124BI	GAGCTC	2 cut(s)	123, 289
Psp5II	RGGWCCY	5 cut(s)	1497, 2158, 3613, 5178, 5420
Psp6I	CCWGG	4 cut(s)	1908, 2762, 3171, 3361
PspCI	CACGTG	1 cut(s)	3865
PspGI	CCWGG	4 cut(s)	1908, 2762, 3171, 3361
PspOMI	GGGCCC	1 cut(s)	4131
PspPPI	RGGWCCY	5 cut(s)	1497, 2158, 3613, 5178, 5420
PstI	CTGCAG	3 cut(s)	1039, 3886, 4489
PstNI	CAGNNNCTG	4 cut(s)	2651, 3134, 3475, 4121
PvuII	CAGCTG	5 cut(s)	1586, 1894, 2176, 4217, 4802
RseI	CAYNNNNRTG	5 cut(s)	48, 248, 3152, 3207, 4917
SacI	GAGCTC	2 cut(s)	123, 289
SalI	GTCGAC	1 cut(s)	3715
SapI	GCTCTTC	4 cut(s)	53, 2573, 2883, 3802
ScaI	AGTACT	1 cut(s)	5339
SchI	GAGTC	7 cut(s)	1624, 1882, 2194, 2273, 2657, 3451, 5264
ScrFI	CCNGG	7 cut(s)	86, 273, 1910, 2764, 3173, 3363, 3545
SfcI	CTRYAG	8 cut(s)	871, 1035, 1086, 1382, 1562, 3379, 3882, 4485
SfuI	TTCGAA	3 cut(s)	639, 1816, 3502
SmiMI	CAYNNNNRTG	5 cut(s)	48, 248, 3152, 3207, 4917
SmlI	CTYRAG	5 cut(s)	255, 405, 2255, 3617, 5112
SmoI	CTYRAG	5 cut(s)	255, 405, 2255, 3617, 5112
SpeI	ACTAGT	1 cut(s)	2972
SphI	GCATGC	1 cut(s)	3127
SseBI	AGGCCT	2 cut(s)	2055, 4030
SstI	GAGCTC	2 cut(s)	123, 289
StuI	AGGCCT	2 cut(s)	2055, 4030
StyD4I	CCNGG	7 cut(s)	84, 271, 1908, 2762, 3171, 3361, 3543
StyI	CCWWGG	4 cut(s)	132, 2092, 2184, 3934
TaaI	ACNGT	9 cut(s)	1124, 1566, 1810, 3196, 4146, 4261, 4596, 4721, 4889
TaiI	ACGT	9 cut(s)	978, 1231, 1933, 2679, 2717, 3068, 3705, 3867, 5083
TaqII	GACCGA	2 cut(s)	4584, 4653
TatI	WGTACW	6 cut(s)	1810, 2659, 3113, 3489, 4045, 5337
TauI	GCSGC	2 cut(s)	173, 1741
TseFI	GTSAC	8 cut(s)	241, 508, 976, 1128, 2015, 2411, 4731, 5428
Tsp45I	GTSAC	8 cut(s)	241, 508, 976, 1128, 2015, 2411, 4731, 5428
TspGWI	ACGGA	6 cut(s)	38, 1690, 2195, 2430, 2972, 5428
Van91I	CCANNNNNTGG	2 cut(s)	742, 1589
VneI	GTGCAC	2 cut(s)	3155, 3428
VspI	ATTAAT	2 cut(s)	924, 3842
XagI	CCTNNNNNAGG	1 cut(s)	5255
XbaI	TCTAGA	1 cut(s)	2605
XceI	RCATGY	4 cut(s)	1548, 3002, 3127, 3361
XcmI	CCANNNNNNNNNTGG	2 cut(s)	313, 5390
XmiI	GTMKAC	7 cut(s)	1549, 1618, 2696, 3271, 3375, 3716, 5083
XmnI	GAANNNNTTC	5 cut(s)	1329, 1677, 2946, 3087, 3664
ZrmI	AGTACT	1 cut(s)	5339
Zsp2I	ATGCAT	1 cut(s)	1876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.